Wall clock time and date at job start Mon Mar 30 2020 05:25:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 109.47839 * 2 1 4 4 C 1.53006 * 109.46626 * 119.99931 * 2 1 3 5 5 N 1.46498 * 109.46726 * 174.99859 * 4 2 1 6 6 C 1.34779 * 120.00066 * 179.97438 * 5 4 2 7 7 O 1.21286 * 119.99486 * 0.02562 * 6 5 4 8 8 C 1.50698 * 120.00253 * 179.97438 * 6 5 4 9 9 F 1.39896 * 109.47044 * 55.00391 * 8 6 5 10 10 C 1.52999 * 109.47200 * 295.00196 * 8 6 5 11 11 C 1.53001 * 109.46979 * 179.97438 * 10 8 6 12 12 C 1.53003 * 109.47231 * 60.00109 * 11 10 8 13 13 C 1.52999 * 109.47051 * 299.99847 * 12 11 10 14 14 C 1.53001 * 109.46979 * 59.99998 * 13 12 11 15 15 N 1.46504 * 109.47050 * 239.99291 * 2 1 3 16 16 C 1.36938 * 119.99260 * 85.00442 * 15 2 1 17 17 H 1.08000 * 120.00609 * 0.02562 * 16 15 2 18 18 C 1.38819 * 119.99743 * 179.97438 * 16 15 2 19 19 N 1.31618 * 119.99820 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00166 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47195 * 90.00318 * 20 18 16 22 22 H 1.48499 * 109.47032 * 210.00173 * 20 18 16 23 23 H 1.48502 * 109.46930 * 330.00074 * 20 18 16 24 24 H 1.09002 * 109.46719 * 60.00158 * 1 2 3 25 25 H 1.08993 * 109.47839 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47160 * 300.00438 * 1 2 3 27 27 H 1.08995 * 109.46794 * 294.99833 * 4 2 1 28 28 H 1.09000 * 109.47314 * 54.99967 * 4 2 1 29 29 H 0.96998 * 120.00310 * 359.97438 * 5 4 2 30 30 H 1.09001 * 109.46925 * 299.99471 * 10 8 6 31 31 H 1.08996 * 109.47302 * 60.00039 * 10 8 6 32 32 H 1.08998 * 109.47136 * 299.99943 * 11 10 8 33 33 H 1.09003 * 109.47076 * 179.97438 * 11 10 8 34 34 H 1.08997 * 109.47133 * 179.97438 * 12 11 10 35 35 H 1.09003 * 109.47092 * 59.99427 * 12 11 10 36 36 H 1.08998 * 109.47140 * 300.00057 * 13 12 11 37 37 H 1.08996 * 109.47302 * 179.97438 * 13 12 11 38 38 H 1.09003 * 109.47076 * 180.02562 * 14 13 12 39 39 H 1.09003 * 109.47551 * 60.00183 * 14 13 12 40 40 H 0.96998 * 120.00034 * 265.00623 * 15 2 1 41 41 H 0.97001 * 120.00197 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 3.4999 -0.8265 1.1907 6 6 4.1730 -1.4284 2.1913 7 8 3.5697 -1.8833 3.1401 8 6 5.6748 -1.5371 2.1307 9 9 6.2278 -0.2640 1.9562 10 6 6.0744 -2.4321 0.9559 11 6 7.5992 -2.5420 0.8941 12 6 8.1201 -3.1493 2.1982 13 6 7.7205 -2.2543 3.3730 14 6 6.1957 -2.1445 3.4348 15 7 2.0183 -0.6908 -1.1961 16 6 2.1491 -0.0076 -2.3757 17 1 1.8927 1.0404 -2.4242 18 6 2.6123 -0.6619 -3.5090 19 7 2.9253 -1.9390 -3.4498 20 14 2.7915 0.2700 -5.1179 21 1 4.1538 0.8550 -5.2021 22 1 2.5815 -0.6613 -6.2554 23 1 1.7815 1.3572 -5.1753 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.7515 -0.1583 2.1370 28 1 1.6052 -1.7198 1.2953 29 1 3.9823 -0.4629 0.4317 30 1 5.6435 -3.4241 1.0920 31 1 5.7037 -1.9992 0.0268 32 1 8.0297 -1.5499 0.7579 33 1 7.8839 -3.1800 0.0574 34 1 9.2063 -3.2280 2.1539 35 1 7.6895 -4.1414 2.3344 36 1 8.1510 -1.2622 3.2368 37 1 8.0912 -2.6872 4.3021 38 1 5.9110 -1.5064 4.2715 39 1 5.7651 -3.1365 3.5711 40 1 2.2489 -1.6319 -1.1525 41 1 3.2486 -2.3963 -4.2418 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001774043182.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:10 Heat of formation + Delta-G solvation = -102.042528 kcal Electronic energy + Delta-G solvation = -22061.912815 eV Core-core repulsion = 18697.275066 eV Total energy + Delta-G solvation = -3364.637749 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.164 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -47.81345 -39.55938 -37.42680 -36.29796 -33.64137 -31.98702 -30.87953 -30.66136 -28.74091 -26.10629 -23.85102 -23.22713 -22.73952 -20.33933 -20.18160 -19.51084 -17.76279 -17.12461 -16.33003 -15.86149 -15.26623 -15.07082 -14.73894 -14.43688 -14.24000 -13.78801 -13.49308 -13.39144 -13.15973 -12.52282 -12.41495 -12.22572 -12.14454 -12.10795 -11.98592 -11.82236 -11.39944 -11.13409 -10.89765 -10.79215 -10.75797 -10.65561 -10.38957 -10.12395 -10.04416 -9.75193 -9.44235 -9.01715 -8.71991 -7.08095 -5.84967 -3.15206 2.68356 3.31345 3.38577 3.44669 3.45643 4.36667 4.45563 4.51841 4.63882 4.69378 4.99643 5.06021 5.20262 5.27090 5.39366 5.41266 5.44509 5.53357 5.56176 5.68254 5.89568 5.92499 5.95879 5.97290 6.04441 6.05442 6.14883 6.15619 6.19523 6.27721 6.35030 6.52503 6.69708 6.76736 6.99636 7.63355 7.79025 8.32281 8.37676 9.44620 9.98498 10.34511 11.36974 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.018099 B = 0.005512 C = 0.004526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.649907 B = 5078.227642 C = 6185.423568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.159 3.841 3 H 0.054 0.946 4 C 0.113 3.887 5 N -0.699 5.699 6 C 0.496 3.504 7 O -0.541 6.541 8 C 0.112 3.888 9 F -0.194 7.194 10 C -0.140 4.140 11 C -0.118 4.118 12 C -0.122 4.122 13 C -0.121 4.121 14 C -0.121 4.121 15 N -0.724 5.724 16 C -0.243 4.243 17 H 0.071 0.929 18 C -0.010 4.010 19 N -0.930 5.930 20 Si 0.906 3.094 21 H -0.289 1.289 22 H -0.292 1.292 23 H -0.282 1.282 24 H 0.058 0.942 25 H 0.049 0.951 26 H 0.039 0.961 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.414 0.586 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.077 0.923 39 H 0.087 0.913 40 H 0.385 0.615 41 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.791 -0.630 11.687 14.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.048 3.952 3 H 0.072 0.928 4 C -0.012 4.012 5 N -0.350 5.350 6 C 0.280 3.720 7 O -0.419 6.419 8 C 0.091 3.909 9 F -0.174 7.174 10 C -0.178 4.178 11 C -0.156 4.156 12 C -0.160 4.160 13 C -0.158 4.158 14 C -0.159 4.159 15 N -0.366 5.366 16 C -0.374 4.374 17 H 0.089 0.911 18 C -0.206 4.206 19 N -0.578 5.578 20 Si 0.737 3.263 21 H -0.217 1.217 22 H -0.218 1.218 23 H -0.208 1.208 24 H 0.077 0.923 25 H 0.068 0.932 26 H 0.058 0.942 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.251 0.749 30 H 0.104 0.896 31 H 0.108 0.892 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.096 0.904 39 H 0.106 0.894 40 H 0.219 0.781 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 7.357 -0.786 12.190 14.260 hybrid contribution 0.254 0.416 -1.430 1.511 sum 7.611 -0.370 10.760 13.185 Atomic orbital electron populations 1.22353 0.98177 1.01292 1.00427 1.20521 0.92767 0.95809 0.86062 0.92768 1.21765 0.79156 1.01306 0.98930 1.46003 1.08478 1.57413 1.23103 1.20756 0.89478 0.78853 0.82951 1.90678 1.69655 1.48142 1.33400 1.21169 0.89779 0.80829 0.99169 1.92874 1.86616 1.41239 1.96718 1.22143 0.97851 1.00387 0.97389 1.21499 0.94183 1.02022 0.97856 1.21595 1.00646 0.99126 0.94612 1.21551 0.94783 1.00776 0.98696 1.21874 0.96170 1.02774 0.95103 1.42465 1.78112 1.10777 1.05255 1.19226 1.36959 0.93900 0.87312 0.91092 1.24732 1.01941 0.95907 0.98010 1.69658 1.50572 1.08599 1.28997 0.86213 0.77810 0.78618 0.83659 1.21681 1.21811 1.20774 0.92259 0.93188 0.94167 0.91653 0.91584 0.74933 0.89621 0.89238 0.91148 0.90942 0.91710 0.91752 0.91328 0.91320 0.90399 0.89431 0.78116 0.93456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.79 9.49 37.16 0.35 -2.43 16 2 C 0.16 2.97 3.05 -67.93 -0.21 2.77 16 3 H 0.05 1.02 8.08 -51.93 -0.42 0.60 16 4 C 0.11 1.93 5.23 -4.04 -0.02 1.91 16 5 N -0.70 -12.04 5.35 -60.29 -0.32 -12.36 16 6 C 0.50 8.43 6.82 -10.99 -0.07 8.36 16 7 O -0.54 -10.35 15.99 5.55 0.09 -10.26 16 8 C 0.11 1.61 1.05 -91.77 -0.10 1.51 16 9 F -0.19 -2.95 15.75 2.25 0.04 -2.91 16 10 C -0.14 -1.88 4.95 -26.73 -0.13 -2.02 16 11 C -0.12 -1.34 5.80 -26.73 -0.16 -1.49 16 12 C -0.12 -1.19 5.92 -26.73 -0.16 -1.35 16 13 C -0.12 -1.22 5.80 -26.73 -0.16 -1.38 16 14 C -0.12 -1.51 4.30 -26.73 -0.12 -1.62 16 15 N -0.72 -16.80 4.56 -53.42 -0.24 -17.04 16 16 C -0.24 -6.33 9.93 -15.06 -0.15 -6.48 16 17 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 18 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 19 N -0.93 -26.72 13.06 55.49 0.72 -25.99 16 20 Si 0.91 21.59 29.55 -169.99 -5.02 16.57 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 24 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 25 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 28 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 29 H 0.41 7.39 7.92 -40.82 -0.32 7.06 16 30 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 31 H 0.09 1.36 7.92 -51.93 -0.41 0.95 16 32 H 0.07 0.82 7.80 -51.93 -0.41 0.42 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.72 7.80 -51.93 -0.41 0.32 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 39 H 0.09 1.09 8.05 -51.93 -0.42 0.67 16 40 H 0.38 9.64 7.80 -40.82 -0.32 9.32 16 41 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 334.50 15.07 5.04 5.04 Total: -1.00 -28.97 334.50 -7.61 -36.57 By element: Atomic # 1 Polarization: 19.86 SS G_CDS: -6.90 Total: 12.96 kcal Atomic # 6 Polarization: -1.57 SS G_CDS: -1.01 Total: -2.58 kcal Atomic # 7 Polarization: -55.55 SS G_CDS: 0.16 Total: -55.40 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: 0.09 Total: -10.26 kcal Atomic # 9 Polarization: -2.95 SS G_CDS: 0.04 Total: -2.91 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -28.97 -7.61 -36.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001774043182.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.469 kcal (2) G-P(sol) polarization free energy of solvation -28.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds