Wall clock time and date at job start Mon Mar 30 2020 05:25:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 109.47839 * 2 1 4 4 C 1.53006 * 109.46626 * 119.99931 * 2 1 3 5 5 N 1.46498 * 109.46726 * 174.99859 * 4 2 1 6 6 C 1.34779 * 120.00066 * 179.97438 * 5 4 2 7 7 O 1.21286 * 119.99486 * 0.02562 * 6 5 4 8 8 C 1.50698 * 120.00253 * 179.97438 * 6 5 4 9 9 F 1.39896 * 109.47044 * 55.00391 * 8 6 5 10 10 C 1.52999 * 109.47200 * 295.00196 * 8 6 5 11 11 C 1.53001 * 109.46979 * 179.97438 * 10 8 6 12 12 C 1.53003 * 109.47231 * 60.00109 * 11 10 8 13 13 C 1.52999 * 109.47051 * 299.99847 * 12 11 10 14 14 C 1.53001 * 109.46979 * 59.99998 * 13 12 11 15 15 N 1.46504 * 109.47050 * 239.99291 * 2 1 3 16 16 C 1.36938 * 119.99260 * 85.00442 * 15 2 1 17 17 H 1.08000 * 120.00609 * 0.02562 * 16 15 2 18 18 C 1.38819 * 119.99743 * 179.97438 * 16 15 2 19 19 N 1.31618 * 119.99820 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00166 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47195 * 90.00318 * 20 18 16 22 22 H 1.48499 * 109.47032 * 210.00173 * 20 18 16 23 23 H 1.48502 * 109.46930 * 330.00074 * 20 18 16 24 24 H 1.09002 * 109.46719 * 60.00158 * 1 2 3 25 25 H 1.08993 * 109.47839 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47160 * 300.00438 * 1 2 3 27 27 H 1.08995 * 109.46794 * 294.99833 * 4 2 1 28 28 H 1.09000 * 109.47314 * 54.99967 * 4 2 1 29 29 H 0.96998 * 120.00310 * 359.97438 * 5 4 2 30 30 H 1.09001 * 109.46925 * 299.99471 * 10 8 6 31 31 H 1.08996 * 109.47302 * 60.00039 * 10 8 6 32 32 H 1.08998 * 109.47136 * 299.99943 * 11 10 8 33 33 H 1.09003 * 109.47076 * 179.97438 * 11 10 8 34 34 H 1.08997 * 109.47133 * 179.97438 * 12 11 10 35 35 H 1.09003 * 109.47092 * 59.99427 * 12 11 10 36 36 H 1.08998 * 109.47140 * 300.00057 * 13 12 11 37 37 H 1.08996 * 109.47302 * 179.97438 * 13 12 11 38 38 H 1.09003 * 109.47076 * 180.02562 * 14 13 12 39 39 H 1.09003 * 109.47551 * 60.00183 * 14 13 12 40 40 H 0.96998 * 120.00034 * 265.00623 * 15 2 1 41 41 H 0.97001 * 120.00197 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 3.4999 -0.8265 1.1907 6 6 4.1730 -1.4284 2.1913 7 8 3.5697 -1.8833 3.1401 8 6 5.6748 -1.5371 2.1307 9 9 6.2278 -0.2640 1.9562 10 6 6.0744 -2.4321 0.9559 11 6 7.5992 -2.5420 0.8941 12 6 8.1201 -3.1493 2.1982 13 6 7.7205 -2.2543 3.3730 14 6 6.1957 -2.1445 3.4348 15 7 2.0183 -0.6908 -1.1961 16 6 2.1491 -0.0076 -2.3757 17 1 1.8927 1.0404 -2.4242 18 6 2.6123 -0.6619 -3.5090 19 7 2.9253 -1.9390 -3.4498 20 14 2.7915 0.2700 -5.1179 21 1 4.1538 0.8550 -5.2021 22 1 2.5815 -0.6613 -6.2554 23 1 1.7815 1.3572 -5.1753 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.7515 -0.1583 2.1370 28 1 1.6052 -1.7198 1.2953 29 1 3.9823 -0.4629 0.4317 30 1 5.6435 -3.4241 1.0920 31 1 5.7037 -1.9992 0.0268 32 1 8.0297 -1.5499 0.7579 33 1 7.8839 -3.1800 0.0574 34 1 9.2063 -3.2280 2.1539 35 1 7.6895 -4.1414 2.3344 36 1 8.1510 -1.2622 3.2368 37 1 8.0912 -2.6872 4.3021 38 1 5.9110 -1.5064 4.2715 39 1 5.7651 -3.1365 3.5711 40 1 2.2489 -1.6319 -1.1525 41 1 3.2486 -2.3963 -4.2418 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001774043182.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:10 Heat of formation + Delta-G solvation = -119.680309 kcal Electronic energy + Delta-G solvation = -22062.677646 eV Core-core repulsion = 18697.275066 eV Total energy + Delta-G solvation = -3365.402580 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.164 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.01682 -40.91837 -38.51103 -37.81527 -35.29705 -33.72185 -31.88513 -31.74699 -30.51780 -27.46446 -25.72716 -24.42195 -23.72070 -21.79004 -21.44145 -20.61340 -19.45081 -18.68898 -17.57974 -17.11998 -16.89132 -16.32639 -15.99767 -15.84077 -15.62753 -15.25934 -14.92542 -14.49010 -14.44659 -13.96103 -13.69808 -13.63998 -13.40409 -13.30369 -13.19640 -13.08918 -12.84527 -12.77120 -12.51789 -12.18666 -12.10833 -11.74399 -11.70527 -11.67636 -11.51072 -11.07607 -10.99460 -10.72411 -10.14781 -9.03327 -7.92145 -5.21087 1.31700 1.49846 1.50454 1.58137 2.00353 2.57244 3.23453 3.36921 3.42171 3.51120 3.61347 3.86058 3.93736 4.09146 4.12205 4.24947 4.35038 4.35771 4.43742 4.59058 4.61552 4.69691 4.80656 4.80709 4.96997 5.02353 5.04829 5.13621 5.14506 5.22993 5.26731 5.28979 5.31413 5.48513 5.54601 5.55949 6.28525 6.37403 6.97392 7.36313 8.07220 8.32590 9.30415 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.018099 B = 0.005512 C = 0.004526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.649907 B = 5078.227642 C = 6185.423568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.158 3.842 3 H 0.057 0.943 4 C 0.120 3.880 5 N -0.701 5.701 6 C 0.492 3.508 7 O -0.563 6.563 8 C 0.114 3.886 9 F -0.199 7.199 10 C -0.137 4.137 11 C -0.116 4.116 12 C -0.119 4.119 13 C -0.116 4.116 14 C -0.119 4.119 15 N -0.731 5.731 16 C -0.236 4.236 17 H 0.076 0.924 18 C -0.068 4.068 19 N -0.965 5.965 20 Si 0.965 3.035 21 H -0.288 1.288 22 H -0.300 1.300 23 H -0.272 1.272 24 H 0.045 0.955 25 H 0.044 0.956 26 H 0.073 0.927 27 H 0.083 0.917 28 H 0.058 0.942 29 H 0.410 0.590 30 H 0.086 0.914 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.091 0.909 38 H 0.072 0.928 39 H 0.087 0.913 40 H 0.373 0.627 41 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.444 -0.112 12.559 15.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.049 3.951 3 H 0.075 0.925 4 C -0.004 4.004 5 N -0.351 5.351 6 C 0.277 3.723 7 O -0.443 6.443 8 C 0.093 3.907 9 F -0.179 7.179 10 C -0.175 4.175 11 C -0.154 4.154 12 C -0.156 4.156 13 C -0.153 4.153 14 C -0.157 4.157 15 N -0.372 5.372 16 C -0.368 4.368 17 H 0.094 0.906 18 C -0.260 4.260 19 N -0.615 5.615 20 Si 0.795 3.205 21 H -0.215 1.215 22 H -0.227 1.227 23 H -0.197 1.197 24 H 0.064 0.936 25 H 0.063 0.937 26 H 0.092 0.908 27 H 0.101 0.899 28 H 0.076 0.924 29 H 0.246 0.754 30 H 0.105 0.895 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.098 0.902 34 H 0.103 0.897 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.109 0.891 38 H 0.091 0.909 39 H 0.106 0.894 40 H 0.206 0.794 41 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 7.992 -0.226 13.091 15.339 hybrid contribution -0.009 0.299 -1.630 1.657 sum 7.983 0.073 11.461 13.967 Atomic orbital electron populations 1.22221 0.96476 1.01290 1.01415 1.20689 0.93813 0.95552 0.85008 0.92476 1.21685 0.79186 1.00878 0.98671 1.46056 1.08560 1.57427 1.23084 1.21261 0.90695 0.78048 0.82299 1.90658 1.70456 1.49027 1.34123 1.21242 0.87913 0.80803 1.00743 1.92862 1.86478 1.41751 1.96852 1.22121 0.99678 0.99912 0.95835 1.21517 0.92241 1.02202 0.99433 1.21600 1.01872 0.99037 0.93121 1.21560 0.92728 1.01008 1.00034 1.21904 0.97982 1.02321 0.93494 1.42574 1.78392 1.10285 1.05977 1.19554 1.34977 0.94140 0.88148 0.90578 1.25419 1.02950 0.96692 1.00967 1.69801 1.52425 1.09997 1.29279 0.85261 0.77787 0.77444 0.79959 1.21540 1.22719 1.19749 0.93612 0.93705 0.90781 0.89881 0.92394 0.75354 0.89506 0.91586 0.91603 0.90213 0.89688 0.91114 0.91618 0.89086 0.90906 0.89431 0.79449 0.94165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.05 9.49 71.98 0.68 -4.37 16 2 C 0.16 5.78 3.05 44.99 0.14 5.91 16 3 H 0.06 2.08 8.08 -2.39 -0.02 2.06 16 4 C 0.12 4.03 5.23 86.38 0.45 4.48 16 5 N -0.70 -24.15 5.35 -463.05 -2.48 -26.62 16 6 C 0.49 16.67 6.82 87.66 0.60 17.27 16 7 O -0.56 -21.36 15.99 -3.05 -0.05 -21.41 16 8 C 0.11 3.24 1.05 -11.54 -0.01 3.22 16 9 F -0.20 -5.96 15.75 44.97 0.71 -5.25 16 10 C -0.14 -3.69 4.95 30.59 0.15 -3.54 16 11 C -0.12 -2.50 5.80 30.60 0.18 -2.32 16 12 C -0.12 -2.02 5.92 30.60 0.18 -1.84 16 13 C -0.12 -2.08 5.80 30.59 0.18 -1.91 16 14 C -0.12 -2.81 4.30 30.60 0.13 -2.68 16 15 N -0.73 -33.99 4.56 -322.93 -1.47 -35.46 16 16 C -0.24 -12.27 9.93 84.04 0.83 -11.43 16 17 H 0.08 3.81 7.83 -2.91 -0.02 3.79 16 18 C -0.07 -3.68 5.50 84.86 0.47 -3.22 16 19 N -0.96 -56.29 13.06 21.65 0.28 -56.01 16 20 Si 0.97 44.52 29.55 68.60 2.03 46.55 16 21 H -0.29 -13.10 7.11 99.48 0.71 -12.40 16 22 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 23 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 24 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 25 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 26 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 27 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 28 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 29 H 0.41 14.83 7.92 -92.71 -0.73 14.09 16 30 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 31 H 0.07 2.07 7.92 -2.39 -0.02 2.05 16 32 H 0.07 1.47 7.80 -2.39 -0.02 1.45 16 33 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.07 1.24 7.80 -2.39 -0.02 1.22 16 37 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.09 2.07 8.05 -2.39 -0.02 2.05 16 40 H 0.37 19.01 7.80 -92.71 -0.72 18.29 16 41 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 Total: -1.00 -61.15 334.50 2.56 -58.59 By element: Atomic # 1 Polarization: 40.47 SS G_CDS: -0.44 Total: 40.03 kcal Atomic # 6 Polarization: -4.39 SS G_CDS: 3.98 Total: -0.41 kcal Atomic # 7 Polarization: -114.43 SS G_CDS: -3.67 Total: -118.09 kcal Atomic # 8 Polarization: -21.36 SS G_CDS: -0.05 Total: -21.41 kcal Atomic # 9 Polarization: -5.96 SS G_CDS: 0.71 Total: -5.25 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -61.15 2.56 -58.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001774043182.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.092 kcal (2) G-P(sol) polarization free energy of solvation -61.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds