Wall clock time and date at job start Mon Mar 30 2020 04:49:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30857 * 1 3 3 Si 1.86801 * 119.99860 * 2 1 4 4 H 1.48503 * 109.47300 * 270.00025 * 3 2 1 5 5 H 1.48500 * 109.47185 * 30.00360 * 3 2 1 6 6 H 1.48506 * 109.47121 * 150.00503 * 3 2 1 7 7 C 1.40071 * 120.00108 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00027 * 179.97438 * 7 2 1 9 9 C 1.40042 * 120.00142 * 359.97438 * 7 2 1 10 10 C 1.38585 * 126.24982 * 359.97438 * 9 7 2 11 11 N 1.30679 * 113.54560 * 179.97438 * 10 9 7 12 12 C 1.29519 * 117.63518 * 0.02562 * 11 10 9 13 13 C 1.50702 * 124.56140 * 179.97438 * 12 11 10 14 14 H 1.09000 * 110.28137 * 162.90470 * 13 12 11 15 15 C 1.54158 * 110.31670 * 285.02010 * 13 12 11 16 16 C 1.53876 * 108.70443 * 146.81308 * 15 13 12 17 17 C 1.55054 * 106.62390 * 312.82196 * 16 15 13 18 18 S 1.82913 * 110.31923 * 40.68533 * 13 12 11 19 19 O 1.42103 * 109.35683 * 352.37090 * 18 13 12 20 20 O 1.42101 * 109.35388 * 125.57729 * 18 13 12 21 21 S 1.70882 * 110.87572 * 0.24223 * 12 11 10 22 22 H 0.97006 * 120.00177 * 359.97438 * 1 2 3 23 23 H 1.08002 * 123.23085 * 359.96333 * 10 9 7 24 24 H 1.08999 * 109.65008 * 26.96169 * 15 13 12 25 25 H 1.09005 * 109.53839 * 266.59948 * 15 13 12 26 26 H 1.09000 * 110.03078 * 72.10692 * 16 15 13 27 27 H 1.09002 * 110.03239 * 193.52805 * 16 15 13 28 28 H 1.08992 * 110.79043 * 160.70393 * 17 16 15 29 29 H 1.08998 * 110.78278 * 284.16495 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2425 1.6178 0.0000 4 1 2.4900 2.0465 -1.4001 5 1 1.4400 2.6527 0.7001 6 1 3.5402 1.4402 0.7000 7 6 2.0090 -1.2130 -0.0005 8 1 3.0890 -1.2130 -0.0010 9 6 1.3088 -2.4259 -0.0005 10 6 -0.0688 -2.5768 0.0005 11 7 -0.4573 -3.8245 -0.0003 12 6 0.4597 -4.7392 -0.0014 13 6 0.1885 -6.2216 -0.0019 14 1 1.0816 -6.7690 -0.3033 15 6 -0.2753 -6.6813 1.3946 16 6 -1.2801 -7.8345 1.2259 17 6 -2.2908 -7.3868 0.1386 18 16 -1.2061 -6.6119 -1.1193 19 8 -1.7994 -5.4026 -1.5721 20 8 -0.7959 -7.5965 -2.0582 21 16 2.0184 -4.0389 0.0053 22 1 -0.4851 0.8401 0.0004 23 1 -0.7555 -1.7432 0.0019 24 1 -0.7543 -5.8510 1.9135 25 1 0.5845 -7.0256 1.9693 26 1 -0.7614 -8.7376 0.9041 27 1 -1.8001 -8.0172 2.1663 28 1 -2.8154 -8.2460 -0.2792 29 1 -2.9960 -6.6601 0.5419 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260936886.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:29 Heat of formation + Delta-G solvation = -44.116949 kcal Electronic energy + Delta-G solvation = -16802.358408 eV Core-core repulsion = 13943.980602 eV Total energy + Delta-G solvation = -2858.377806 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 273.028 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -37.83925 -36.42885 -36.02167 -35.29274 -34.21395 -30.80208 -28.94371 -25.96129 -24.16338 -22.45565 -21.11330 -19.45855 -18.26007 -17.15628 -16.91648 -16.05124 -15.74384 -15.00762 -14.81766 -14.11884 -13.78831 -13.71105 -13.31720 -12.73411 -12.36318 -12.13258 -11.78009 -11.70669 -11.50523 -11.46851 -11.39778 -11.30487 -11.22305 -10.73541 -10.52391 -10.17147 -9.94984 -9.71826 -9.65615 -8.07418 -7.97531 -7.30123 -7.10113 -4.70304 0.53373 2.29160 2.82391 2.88789 2.95089 3.02632 3.16948 3.54537 3.64691 4.05632 4.32712 4.44588 4.70907 4.90675 4.96013 5.07125 5.22072 5.29388 5.50722 5.69737 5.83854 5.90204 6.08572 6.36963 6.56230 7.00496 7.28116 7.65027 7.99758 8.21096 8.56783 9.68030 9.69507 Molecular weight = 273.03amu Principal moments of inertia in cm(-1) A = 0.038942 B = 0.005391 C = 0.005218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.853805 B = 5193.056693 C = 5365.104102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.754 5.754 2 C 0.063 3.937 3 Si 0.938 3.062 4 H -0.263 1.263 5 H -0.270 1.270 6 H -0.257 1.257 7 C -0.362 4.362 8 H 0.091 0.909 9 C 0.020 3.980 10 C -0.127 4.127 11 N -0.386 5.386 12 C -0.151 4.151 13 C -0.413 4.413 14 H 0.130 0.870 15 C -0.108 4.108 16 C -0.117 4.117 17 C -0.598 4.598 18 S 2.378 3.622 19 O -0.900 6.900 20 O -0.961 6.961 21 S -0.047 6.047 22 H 0.293 0.707 23 H 0.199 0.801 24 H 0.089 0.911 25 H 0.085 0.915 26 H 0.080 0.920 27 H 0.089 0.911 28 H 0.125 0.875 29 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.537 -6.864 3.645 7.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.377 5.377 2 C -0.162 4.162 3 Si 0.760 3.240 4 H -0.187 1.187 5 H -0.195 1.195 6 H -0.181 1.181 7 C -0.400 4.400 8 H 0.109 0.891 9 C -0.103 4.103 10 C -0.285 4.285 11 N -0.098 5.098 12 C -0.416 4.416 13 C -0.527 4.527 14 H 0.148 0.852 15 C -0.147 4.147 16 C -0.156 4.156 17 C -0.726 4.726 18 S 2.561 3.439 19 O -0.897 6.897 20 O -0.958 6.958 21 S 0.203 5.797 22 H 0.105 0.895 23 H 0.215 0.785 24 H 0.107 0.893 25 H 0.104 0.896 26 H 0.098 0.902 27 H 0.108 0.892 28 H 0.144 0.856 29 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -0.539 -7.384 2.661 7.868 hybrid contribution -0.109 1.147 0.816 1.412 sum -0.648 -6.238 3.477 7.171 Atomic orbital electron populations 1.69470 1.07909 1.30264 1.30104 1.26213 0.95174 1.02098 0.92687 0.85799 0.80012 0.78335 0.79828 1.18735 1.19477 1.18060 1.19162 0.95242 0.88740 1.36876 0.89120 1.23450 0.95863 0.93268 0.97689 1.23130 0.93384 0.91804 1.20205 1.65348 1.36034 1.01583 1.06853 1.23318 0.91338 0.94080 1.32913 1.28153 1.16281 0.98212 1.10060 0.85169 1.22096 0.99221 0.98116 0.95315 1.22179 0.95165 0.98886 0.99348 1.30658 1.12401 1.13018 1.16530 1.09819 0.79902 0.75816 0.78358 1.93653 1.74543 1.43028 1.78481 1.93538 1.82042 1.61665 1.58519 1.82895 1.13806 1.03315 1.79698 0.89512 0.78482 0.89279 0.89625 0.90152 0.89206 0.85639 0.84652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -17.81 10.18 55.56 0.57 -17.24 15 2 C 0.06 1.42 5.50 -17.28 -0.10 1.33 15 3 Si 0.94 16.62 29.56 -169.99 -5.03 11.60 15 4 H -0.26 -4.63 7.11 56.52 0.40 -4.23 15 5 H -0.27 -4.65 7.11 56.52 0.40 -4.25 15 6 H -0.26 -4.47 7.11 56.52 0.40 -4.07 15 7 C -0.36 -8.86 9.42 -38.22 -0.36 -9.22 15 8 H 0.09 2.06 7.85 -52.48 -0.41 1.64 15 9 C 0.02 0.51 6.30 -38.78 -0.24 0.27 15 10 C -0.13 -3.48 10.55 -17.91 -0.19 -3.66 15 11 N -0.39 -10.04 8.72 -10.84 -0.09 -10.14 15 12 C -0.15 -3.49 5.87 -13.25 -0.08 -3.57 15 13 C -0.41 -7.42 3.69 -27.28 -0.10 -7.52 15 14 H 0.13 2.08 8.14 -51.93 -0.42 1.66 15 15 C -0.11 -1.54 5.93 -25.67 -0.15 -1.69 15 16 C -0.12 -1.32 6.48 -25.19 -0.16 -1.48 15 17 C -0.60 -7.60 7.31 38.24 0.28 -7.32 15 18 S 2.38 42.61 5.93 -107.50 -0.64 41.97 15 19 O -0.90 -20.50 16.04 -57.71 -0.93 -21.42 15 20 O -0.96 -18.85 18.15 -57.71 -1.05 -19.89 15 21 S -0.05 -1.08 23.13 -107.50 -2.49 -3.57 15 22 H 0.29 6.12 8.30 -40.82 -0.34 5.78 15 23 H 0.20 5.52 5.36 -52.49 -0.28 5.24 15 24 H 0.09 1.42 7.85 -51.93 -0.41 1.01 15 25 H 0.09 1.07 8.14 -51.93 -0.42 0.64 15 26 H 0.08 0.76 8.14 -51.93 -0.42 0.34 15 27 H 0.09 0.83 8.14 -51.93 -0.42 0.40 15 28 H 0.13 1.30 8.14 -51.93 -0.42 0.88 15 29 H 0.14 1.67 8.14 -51.93 -0.42 1.25 15 LS Contribution 272.27 15.07 4.10 4.10 Total: -1.00 -31.75 272.27 -9.42 -41.17 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: -2.77 Total: 6.29 kcal Atomic # 6 Polarization: -31.77 SS G_CDS: -1.10 Total: -32.87 kcal Atomic # 7 Polarization: -27.85 SS G_CDS: 0.47 Total: -27.38 kcal Atomic # 8 Polarization: -39.34 SS G_CDS: -1.97 Total: -41.31 kcal Atomic # 14 Polarization: 16.62 SS G_CDS: -5.03 Total: 11.60 kcal Atomic # 16 Polarization: 41.53 SS G_CDS: -3.12 Total: 38.40 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -31.75 -9.42 -41.17 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260936886.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.946 kcal (2) G-P(sol) polarization free energy of solvation -31.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds