Wall clock time and date at job start Mon Mar 30 2020 05:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.50698 * 109.47184 * 119.99962 * 2 1 3 5 5 H 1.08004 * 119.99528 * 119.99911 * 4 2 1 6 6 C 1.37876 * 120.00356 * 300.00710 * 4 2 1 7 7 N 1.31518 * 119.99554 * 359.97438 * 6 4 2 8 8 Si 1.86790 * 120.00086 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47337 * 359.97438 * 8 6 4 10 10 H 1.48504 * 109.47146 * 119.99673 * 8 6 4 11 11 H 1.48499 * 109.47460 * 239.99758 * 8 6 4 12 12 C 1.50697 * 109.47239 * 240.00627 * 2 1 3 13 13 O 1.21592 * 119.99624 * 239.99957 * 12 2 1 14 14 N 1.32904 * 120.00271 * 59.99523 * 12 2 1 15 15 C 1.33306 * 120.00225 * 179.97438 * 14 12 2 16 16 C 1.40989 * 126.35516 * 0.03050 * 15 14 12 17 17 C 1.35128 * 108.23859 * 179.97438 * 16 15 14 18 18 N 1.36334 * 108.89914 * 359.97438 * 17 16 15 19 19 C 1.46495 * 125.86316 * 179.97438 * 18 17 16 20 20 C 1.53001 * 109.47085 * 85.02981 * 19 18 17 21 21 F 1.39902 * 109.47185 * 65.00042 * 20 19 18 22 22 F 1.39898 * 109.47344 * 185.00028 * 20 19 18 23 23 N 1.37277 * 126.36130 * 179.71375 * 15 14 12 24 24 H 0.97002 * 126.34550 * 0.02562 * 23 15 14 25 25 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 27 27 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 28 28 H 0.97005 * 119.99198 * 180.02562 * 7 6 4 29 29 H 1.07999 * 125.87675 * 359.93428 * 16 15 14 30 30 H 1.08001 * 125.54601 * 179.97438 * 17 16 15 31 31 H 1.08996 * 109.47295 * 205.02563 * 19 18 17 32 32 H 1.09005 * 109.47567 * 325.03000 * 19 18 17 33 33 H 1.09002 * 109.46944 * 305.00102 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9434 0.8300 2.6034 8 14 2.3214 -1.1205 4.0078 9 1 3.1456 -2.2877 3.6036 10 1 3.1466 -0.1875 4.8164 11 1 1.1661 -1.5869 4.8159 12 6 2.0324 -0.7103 -1.2305 13 8 2.7315 -1.6989 -1.1190 14 7 1.7113 -0.2562 -2.4376 15 6 2.1561 -0.8842 -3.5261 16 6 2.9700 -2.0351 -3.5530 17 6 3.2001 -2.3602 -4.8443 18 7 2.5632 -1.4605 -5.6464 19 6 2.5662 -1.4640 -7.1114 20 6 1.4667 -2.3978 -7.6214 21 9 0.2159 -1.8892 -7.2551 22 9 1.5426 -2.4899 -9.0153 23 7 1.9018 -0.5339 -4.8288 24 1 1.3653 0.2168 -5.1280 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 0.7094 1.1615 3.4845 29 1 3.3455 -2.5651 -2.6902 30 1 3.7922 -3.1967 -5.1852 31 1 2.3835 -0.4537 -7.4775 32 1 3.5343 -1.8116 -7.4720 33 1 1.5988 -3.3874 -7.1841 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597344607.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:22 Heat of formation + Delta-G solvation = -21.994108 kcal Electronic energy + Delta-G solvation = -20494.713017 eV Core-core repulsion = 16808.827117 eV Total energy + Delta-G solvation = -3685.885899 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.103 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.57967 -47.58641 -41.35839 -38.29840 -34.70781 -33.41560 -32.12109 -31.50909 -30.19249 -27.95007 -24.85645 -24.11935 -22.91235 -21.88939 -21.14675 -19.16549 -18.26391 -17.86149 -17.40098 -16.64947 -16.08330 -15.55968 -15.14848 -14.85545 -14.72935 -14.49725 -14.03597 -13.93773 -13.75798 -13.61724 -13.13446 -12.91907 -12.76309 -12.23853 -11.87157 -11.31896 -10.84805 -10.55808 -10.41588 -10.36321 -9.91925 -9.81073 -9.50755 -8.97734 -8.57784 -8.23227 -7.91932 -7.31776 -5.80375 -3.82667 1.11216 1.19344 2.75272 3.02463 3.33378 3.44415 3.50864 3.56437 3.59615 3.75923 4.11872 4.41316 4.47187 4.61307 4.61582 4.71897 5.21857 5.46273 5.52155 5.64054 6.18214 6.61350 6.87030 7.08577 7.16384 7.31865 7.40407 7.63258 7.92655 8.06597 8.31789 8.38654 8.61099 9.24981 9.72382 9.82021 11.27165 Molecular weight = 273.10amu Principal moments of inertia in cm(-1) A = 0.047638 B = 0.003495 C = 0.003368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.627806 B = 8009.644286 C = 8312.563921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.048 3.952 3 H 0.051 0.949 4 C -0.497 4.497 5 H 0.072 0.928 6 C 0.055 3.945 7 N -0.897 5.897 8 Si 0.896 3.104 9 H -0.272 1.272 10 H -0.286 1.286 11 H -0.286 1.286 12 C 0.505 3.495 13 O -0.561 6.561 14 N -0.656 5.656 15 C 0.470 3.530 16 C -0.272 4.272 17 C 0.119 3.881 18 N -0.404 5.404 19 C 0.096 3.904 20 C 0.240 3.760 21 F -0.196 7.196 22 F -0.197 7.197 23 N -0.487 5.487 24 H 0.446 0.554 25 H 0.021 0.979 26 H 0.085 0.915 27 H 0.021 0.979 28 H 0.257 0.743 29 H 0.194 0.806 30 H 0.192 0.808 31 H 0.115 0.885 32 H 0.134 0.866 33 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.557 -5.877 -25.071 25.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.027 3.973 3 H 0.069 0.931 4 C -0.536 4.536 5 H 0.090 0.910 6 C -0.145 4.145 7 N -0.538 5.538 8 Si 0.724 3.276 9 H -0.197 1.197 10 H -0.212 1.212 11 H -0.212 1.212 12 C 0.295 3.705 13 O -0.440 6.440 14 N -0.410 5.410 15 C 0.212 3.788 16 C -0.303 4.303 17 C -0.012 4.012 18 N -0.199 5.199 19 C -0.028 4.028 20 C 0.185 3.815 21 F -0.178 7.178 22 F -0.178 7.178 23 N -0.218 5.218 24 H 0.294 0.706 25 H 0.040 0.960 26 H 0.104 0.896 27 H 0.040 0.960 28 H 0.067 0.933 29 H 0.210 0.790 30 H 0.208 0.792 31 H 0.133 0.867 32 H 0.152 0.848 33 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 3.297 -5.526 -24.979 25.795 hybrid contribution 0.228 -0.516 0.518 0.765 sum 3.525 -6.041 -24.462 25.442 Atomic orbital electron populations 1.21567 0.96571 0.98981 1.00798 1.18524 0.94134 0.96481 0.88159 0.93132 1.21319 1.30328 1.12515 0.89468 0.91000 1.24957 0.95407 0.95175 0.98926 1.69929 1.37574 1.23297 1.22954 0.86462 0.78508 0.79749 0.82866 1.19689 1.21230 1.21226 1.22335 0.77066 0.82779 0.88284 1.90360 1.36733 1.27509 1.89402 1.69340 1.36835 1.37616 0.97244 1.19630 0.86549 0.88316 0.84340 1.23043 1.07941 1.01845 0.97490 1.22746 0.94979 0.92761 0.90741 1.45780 1.48365 1.24044 1.01661 1.22702 1.00701 1.03358 0.75994 1.22583 0.81740 1.00272 0.76923 1.93055 1.44334 1.89200 1.91181 1.93027 1.96284 1.97326 1.31152 1.44218 1.50619 1.26287 1.00698 0.70626 0.96011 0.89613 0.96036 0.93313 0.78957 0.79164 0.86707 0.84836 0.86421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.27 8.88 37.16 0.33 -2.94 16 2 C 0.05 1.37 2.71 -92.92 -0.25 1.12 16 3 H 0.05 1.53 8.14 -51.93 -0.42 1.11 16 4 C -0.50 -15.29 8.37 -34.44 -0.29 -15.58 16 5 H 0.07 2.28 6.75 -52.48 -0.35 1.93 16 6 C 0.05 1.64 5.30 -17.82 -0.09 1.55 16 7 N -0.90 -27.19 11.32 55.43 0.63 -26.56 16 8 Si 0.90 22.94 29.54 -169.99 -5.02 17.92 16 9 H -0.27 -6.96 7.11 56.52 0.40 -6.56 16 10 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 11 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 12 C 0.50 13.31 7.03 -11.82 -0.08 13.22 16 13 O -0.56 -15.22 12.36 5.28 0.07 -15.15 16 14 N -0.66 -14.72 10.31 -11.59 -0.12 -14.84 16 15 C 0.47 8.20 8.07 -155.19 -1.25 6.95 16 16 C -0.27 -4.14 9.51 -39.65 -0.38 -4.52 16 17 C 0.12 1.04 11.46 -16.66 -0.19 0.85 16 18 N -0.40 -3.20 3.63 -61.05 -0.22 -3.42 16 19 C 0.10 0.33 6.64 -4.04 -0.03 0.30 16 20 C 0.24 1.14 5.55 37.16 0.21 1.35 16 21 F -0.20 -1.70 17.32 2.25 0.04 -1.67 16 22 F -0.20 -1.14 17.34 2.25 0.04 -1.10 16 23 N -0.49 -5.78 7.37 31.32 0.23 -5.55 16 24 H 0.45 4.43 8.96 -182.55 -1.64 2.79 16 25 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.09 2.45 6.07 -51.93 -0.32 2.14 16 27 H 0.02 0.52 8.05 -51.93 -0.42 0.10 16 28 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 29 H 0.19 3.49 5.77 -52.49 -0.30 3.19 16 30 H 0.19 0.67 8.06 -52.49 -0.42 0.25 16 31 H 0.11 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.13 0.02 8.14 -51.93 -0.42 -0.40 16 33 H 0.12 0.34 8.14 -51.93 -0.42 -0.09 16 LS Contribution 296.71 15.07 4.47 4.47 Total: -1.00 -39.04 296.71 -6.62 -45.66 By element: Atomic # 1 Polarization: 2.63 SS G_CDS: -4.70 Total: -2.07 kcal Atomic # 6 Polarization: 4.34 SS G_CDS: -2.03 Total: 2.31 kcal Atomic # 7 Polarization: -50.89 SS G_CDS: 0.52 Total: -50.37 kcal Atomic # 8 Polarization: -15.22 SS G_CDS: 0.07 Total: -15.15 kcal Atomic # 9 Polarization: -2.85 SS G_CDS: 0.08 Total: -2.77 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -5.02 Total: 17.92 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -39.04 -6.62 -45.66 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597344607.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.663 kcal (2) G-P(sol) polarization free energy of solvation -39.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds