Wall clock time and date at job start Mon Mar 30 2020 04:54:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34236 * 116.99948 * 2 1 4 4 O 1.20823 * 119.99629 * 359.97438 * 3 2 1 5 5 C 1.50695 * 119.99754 * 179.97438 * 3 2 1 6 6 N 1.46903 * 108.83282 * 34.79042 * 5 3 2 7 7 C 1.46894 * 111.00401 * 56.22473 * 6 5 3 8 8 C 1.52993 * 109.47398 * 176.39984 * 7 6 5 9 9 C 1.53006 * 109.47296 * 179.97438 * 8 7 6 10 10 C 1.50697 * 109.47045 * 180.02562 * 9 8 7 11 11 H 1.08002 * 120.00159 * 359.97438 * 10 9 8 12 12 C 1.37877 * 119.99631 * 180.02562 * 10 9 8 13 13 N 1.31511 * 120.00230 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 119.99925 * 179.97438 * 12 10 9 15 15 H 1.48506 * 109.47389 * 89.99783 * 14 12 10 16 16 H 1.48507 * 109.47349 * 329.99913 * 14 12 10 17 17 H 1.48500 * 109.47431 * 210.00049 * 14 12 10 18 18 C 1.52339 * 108.86748 * 153.31886 * 5 3 2 19 19 C 1.54258 * 112.58987 * 120.67372 * 18 5 3 20 20 S 1.83959 * 102.57822 * 24.53069 * 19 18 5 21 21 C 1.54256 * 108.87259 * 276.25377 * 5 3 2 22 22 H 1.08996 * 109.46821 * 299.99992 * 1 2 3 23 23 H 1.08997 * 109.46902 * 60.00316 * 1 2 3 24 24 H 1.09005 * 109.47014 * 180.02562 * 1 2 3 25 25 H 1.00899 * 111.00059 * 180.18413 * 6 5 3 26 26 H 1.09000 * 109.47117 * 56.39418 * 7 6 5 27 27 H 1.09005 * 109.46703 * 296.39649 * 7 6 5 28 28 H 1.09000 * 109.47449 * 59.99637 * 8 7 6 29 29 H 1.08997 * 109.47258 * 299.99693 * 8 7 6 30 30 H 1.09000 * 109.47108 * 59.99502 * 9 8 7 31 31 H 1.09005 * 109.46814 * 299.99670 * 9 8 7 32 32 H 0.96999 * 120.00358 * 0.02562 * 13 12 10 33 33 H 1.09007 * 108.86297 * 241.49490 * 18 5 3 34 34 H 1.08995 * 108.86594 * 359.85026 * 18 5 3 35 35 H 1.09001 * 110.78574 * 142.80138 * 19 18 5 36 36 H 1.08997 * 110.78476 * 266.25839 * 19 18 5 37 37 H 1.09001 * 110.78489 * 333.07449 * 21 5 3 38 38 H 1.09000 * 110.78798 * 96.52546 * 21 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 7 4.0999 0.1592 -0.7923 7 6 3.5475 0.1691 -2.1534 8 6 4.1923 -0.9499 -2.9736 9 6 3.6165 -0.9401 -4.3912 10 6 4.2512 -2.0427 -5.1988 11 1 4.9915 -2.6859 -4.7465 12 6 3.8874 -2.2296 -6.5155 13 7 2.9863 -1.4461 -7.0665 14 14 4.6746 -3.5959 -7.5170 15 1 3.8715 -4.8374 -7.3780 16 1 6.0535 -3.8406 -7.0228 17 1 4.7248 -3.1963 -8.9463 18 6 3.9911 2.5868 -0.6468 19 6 4.8247 3.4729 0.3016 20 16 5.5396 2.2461 1.4711 21 6 4.0723 1.1425 1.4518 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 5.1085 0.1789 -0.8112 26 1 3.7560 1.1303 -2.6231 27 1 2.4697 0.0124 -2.1092 28 1 3.9839 -1.9112 -2.5039 29 1 5.2701 -0.7933 -3.0178 30 1 3.8246 0.0212 -4.8611 31 1 2.5387 -1.0970 -4.3466 32 1 2.5778 -0.7363 -6.5466 33 1 4.5836 2.3660 -1.5347 34 1 3.0993 3.1356 -0.9492 35 1 5.6126 3.9906 -0.2455 36 1 4.1868 4.1830 0.8279 37 1 3.3181 1.4905 2.1576 38 1 4.3611 0.1140 1.6684 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309976708.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:49 Heat of formation + Delta-G solvation = -112.566941 kcal Electronic energy + Delta-G solvation = -19568.086747 eV Core-core repulsion = 16535.654045 eV Total energy + Delta-G solvation = -3032.432702 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.16354 -39.14842 -37.72092 -36.44841 -34.54454 -32.34496 -30.71676 -28.85679 -27.47020 -26.23026 -24.51839 -23.87989 -22.25426 -20.83284 -19.07662 -18.74388 -18.34333 -17.74484 -17.27247 -16.44227 -16.35547 -15.89064 -15.65286 -15.29070 -15.04847 -14.72259 -14.57769 -14.26267 -14.01682 -13.52048 -13.32266 -13.20711 -13.03845 -12.88043 -12.60229 -12.45531 -12.37655 -11.96820 -11.94110 -11.85524 -11.72960 -11.63136 -11.03563 -10.67295 -10.54168 -9.75385 -8.85698 -8.68741 -6.39126 0.64807 0.78030 1.16788 1.53574 1.58209 1.62699 1.80456 2.56685 2.75025 3.11728 3.16437 3.34527 3.56472 3.84363 3.86203 4.04123 4.13163 4.17050 4.19094 4.24036 4.47123 4.48768 4.59867 4.61559 4.63977 4.71409 4.81018 4.86609 5.02016 5.19068 5.38854 5.50212 5.62532 6.01137 6.13773 6.19901 6.51045 6.58146 7.43055 8.72087 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.021593 B = 0.004304 C = 0.003877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.405779 B = 6503.914523 C = 7220.237608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.343 6.343 3 C 0.477 3.523 4 O -0.527 6.527 5 C 0.127 3.873 6 N -0.657 5.657 7 C 0.064 3.936 8 C -0.083 4.083 9 C 0.010 3.990 10 C -0.617 4.617 11 H 0.053 0.947 12 C -0.040 4.040 13 N -0.940 5.940 14 Si 1.120 2.880 15 H -0.272 1.272 16 H -0.267 1.267 17 H -0.283 1.283 18 C -0.159 4.159 19 C -0.053 4.053 20 S -0.289 6.289 21 C -0.046 4.046 22 H 0.074 0.926 23 H 0.054 0.946 24 H 0.127 0.873 25 H 0.364 0.636 26 H 0.033 0.967 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.058 0.942 30 H -0.012 1.012 31 H -0.014 1.014 32 H 0.254 0.746 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.127 0.873 36 H 0.104 0.896 37 H 0.105 0.895 38 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.769 7.012 18.759 20.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.258 6.258 3 C 0.319 3.681 4 O -0.416 6.416 5 C 0.032 3.968 6 N -0.292 5.292 7 C -0.065 4.065 8 C -0.120 4.120 9 C -0.028 4.028 10 C -0.655 4.655 11 H 0.071 0.929 12 C -0.237 4.237 13 N -0.577 5.577 14 Si 0.941 3.059 15 H -0.198 1.198 16 H -0.192 1.192 17 H -0.209 1.209 18 C -0.200 4.200 19 C -0.201 4.201 20 S -0.062 6.062 21 C -0.195 4.195 22 H 0.092 0.908 23 H 0.073 0.927 24 H 0.145 0.855 25 H 0.187 0.813 26 H 0.051 0.949 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.006 0.994 31 H 0.004 0.996 32 H 0.063 0.937 33 H 0.109 0.891 34 H 0.107 0.893 35 H 0.145 0.855 36 H 0.122 0.878 37 H 0.123 0.877 38 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 1.194 6.076 18.130 19.158 hybrid contribution -1.291 1.792 0.273 2.226 sum -0.097 7.868 18.403 20.015 Atomic orbital electron populations 1.23596 0.75142 1.05707 1.02541 1.86665 1.24485 1.32102 1.82558 1.23651 0.91782 0.81499 0.71192 1.90642 1.67097 1.37079 1.46770 1.21446 0.87167 0.92013 0.96129 1.60715 1.13955 1.41445 1.13106 1.22002 0.99174 0.97803 0.87474 1.21215 0.99195 0.97721 0.93919 1.19133 0.94637 0.95250 0.93746 1.22516 1.26055 1.17654 0.99230 0.92902 1.27457 0.95714 1.02655 0.97896 1.70896 1.27466 1.19291 1.40073 0.82901 0.75861 0.72711 0.74407 1.19791 1.19203 1.20906 1.22804 1.02393 0.94555 1.00218 1.24163 1.01600 0.97746 0.96570 1.88127 1.26248 1.28094 1.63753 1.24130 0.97124 1.04391 0.93840 0.90761 0.92684 0.85520 0.81345 0.94940 0.92404 0.92384 0.92370 0.99420 0.99617 0.93659 0.89136 0.89334 0.85491 0.87756 0.87669 0.84420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.48 10.56 113.37 1.20 1.68 16 2 O -0.34 -9.27 9.21 -51.48 -0.47 -9.75 16 3 C 0.48 12.98 5.27 71.23 0.38 13.36 16 4 O -0.53 -15.97 15.20 21.97 0.33 -15.63 16 5 C 0.13 2.96 0.79 2.99 0.00 2.96 16 6 N -0.66 -17.13 5.66 -472.88 -2.68 -19.80 16 7 C 0.06 2.12 4.89 86.30 0.42 2.54 16 8 C -0.08 -3.31 5.38 30.59 0.16 -3.15 16 9 C 0.01 0.52 4.28 29.85 0.13 0.65 16 10 C -0.62 -35.37 9.11 25.60 0.23 -35.13 16 11 H 0.05 2.94 7.74 -2.91 -0.02 2.92 16 12 C -0.04 -2.35 5.46 84.66 0.46 -1.88 16 13 N -0.94 -58.80 13.65 21.45 0.29 -58.51 16 14 Si 1.12 50.35 29.90 68.60 2.05 52.41 16 15 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 16 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 17 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 18 C -0.16 -3.44 4.94 30.80 0.15 -3.29 16 19 C -0.05 -0.90 7.46 72.41 0.54 -0.36 16 20 S -0.29 -5.62 23.26 -56.49 -1.31 -6.93 16 21 C -0.05 -0.89 6.54 72.41 0.47 -0.41 16 22 H 0.07 1.33 8.13 -2.39 -0.02 1.31 16 23 H 0.05 1.23 8.13 -2.39 -0.02 1.21 16 24 H 0.13 2.00 8.14 -2.38 -0.02 1.98 16 25 H 0.36 8.69 8.70 -89.70 -0.78 7.91 16 26 H 0.03 1.06 6.28 -2.39 -0.01 1.05 16 27 H 0.06 2.08 6.37 -2.38 -0.02 2.06 16 28 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 29 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 30 H -0.01 -0.69 8.01 -2.39 -0.02 -0.71 16 31 H -0.01 -0.81 8.01 -2.38 -0.02 -0.83 16 32 H 0.25 16.12 7.22 -92.71 -0.67 15.45 16 33 H 0.09 2.02 6.32 -2.38 -0.02 2.00 16 34 H 0.09 2.15 6.49 -2.39 -0.02 2.13 16 35 H 0.13 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.10 1.60 8.14 -2.39 -0.02 1.59 16 37 H 0.10 1.85 7.85 -2.39 -0.02 1.83 16 38 H 0.14 2.46 8.01 -2.39 -0.02 2.44 16 Total: -1.00 -68.38 320.86 2.74 -65.64 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: 0.38 Total: 15.62 kcal Atomic # 6 Polarization: -27.19 SS G_CDS: 4.15 Total: -23.04 kcal Atomic # 7 Polarization: -75.93 SS G_CDS: -2.38 Total: -78.31 kcal Atomic # 8 Polarization: -25.24 SS G_CDS: -0.14 Total: -25.38 kcal Atomic # 14 Polarization: 50.35 SS G_CDS: 2.05 Total: 52.41 kcal Atomic # 16 Polarization: -5.62 SS G_CDS: -1.31 Total: -6.93 kcal Total: -68.38 2.74 -65.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309976708.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.930 kcal (2) G-P(sol) polarization free energy of solvation -68.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds