Wall clock time and date at job start Mon Mar 30 2020 05:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38040 * 119.94041 * 2 1 4 4 C 1.38437 * 120.62382 * 180.02562 * 3 2 1 5 5 C 1.38092 * 120.07350 * 0.04780 * 4 3 2 6 6 C 1.38986 * 119.73186 * 359.95344 * 5 4 3 7 7 C 1.39035 * 119.93700 * 180.02562 * 2 1 3 8 8 N 1.39004 * 131.69427 * 359.97438 * 7 2 1 9 9 C 1.34386 * 111.43734 * 179.68189 * 8 7 2 10 10 O 1.21749 * 126.02491 * 180.28205 * 9 8 7 11 11 C 1.47289 * 107.94924 * 0.46323 * 9 8 7 12 12 N 1.31320 * 127.50232 * 179.82431 * 11 9 8 13 13 N 1.29002 * 119.99652 * 359.67861 * 12 11 9 14 14 C 1.46497 * 119.99966 * 180.02562 * 13 12 11 15 15 H 1.09007 * 109.47078 * 29.99710 * 14 13 12 16 16 C 1.53000 * 109.47021 * 270.00290 * 14 13 12 17 17 C 1.50694 * 109.47115 * 150.00071 * 14 13 12 18 18 H 1.08000 * 120.00563 * 359.97438 * 17 14 13 19 19 C 1.37885 * 119.99902 * 180.02562 * 17 14 13 20 20 N 1.31516 * 119.99913 * 359.97438 * 19 17 14 21 21 Si 1.86798 * 119.99766 * 179.97438 * 19 17 14 22 22 H 1.48500 * 109.47353 * 269.99586 * 21 19 17 23 23 H 1.48501 * 109.47293 * 30.00037 * 21 19 17 24 24 H 1.48504 * 109.46680 * 149.99835 * 21 19 17 25 25 H 1.09001 * 109.46933 * 269.97142 * 1 2 3 26 26 H 1.08990 * 109.47319 * 29.97191 * 1 2 3 27 27 H 1.08997 * 109.47350 * 149.97968 * 1 2 3 28 28 H 1.08004 * 119.68664 * 0.03094 * 3 2 1 29 29 H 1.07999 * 119.96584 * 180.02562 * 4 3 2 30 30 H 1.07998 * 120.13115 * 180.02562 * 5 4 3 31 31 H 0.97007 * 124.28145 * 359.97438 * 8 7 2 32 32 H 0.96998 * 119.99687 * 0.02562 * 13 12 11 33 33 H 1.09002 * 109.47106 * 299.99878 * 16 14 13 34 34 H 1.08998 * 109.47089 * 59.99825 * 16 14 13 35 35 H 1.08995 * 109.47131 * 179.97438 * 16 14 13 36 36 H 0.97001 * 119.99646 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1960 1.1962 0.0000 4 6 3.5802 1.2127 -0.0005 5 6 4.2864 0.0260 -0.0021 6 6 3.6018 -1.1835 -0.0021 7 6 2.2009 -1.2048 -0.0005 8 7 1.7628 -2.5241 -0.0007 9 6 2.7952 -3.3844 -0.0082 10 8 2.7149 -4.5992 -0.0150 11 6 4.0409 -2.5986 -0.0024 12 7 5.2729 -3.0532 -0.0035 13 7 5.4912 -4.3246 -0.0041 14 6 6.8656 -4.8319 -0.0048 15 1 7.5148 -4.1229 0.5091 16 6 7.3435 -5.0078 -1.4475 17 6 6.9110 -6.1604 0.7051 18 1 6.0067 -6.5844 1.1160 19 6 8.1074 -6.8343 0.8308 20 7 9.2087 -6.3178 0.3308 21 14 8.1638 -8.4807 1.7113 22 1 8.4214 -8.2604 3.1571 23 1 6.8640 -9.1782 1.5407 24 1 9.2512 -9.3126 1.1360 25 1 -0.3633 -0.0005 1.0277 26 1 -0.3633 0.8901 -0.5133 27 1 -0.3634 -0.8898 -0.5141 28 1 1.6499 2.1280 0.0005 29 1 4.1085 2.1547 -0.0001 30 1 5.3664 0.0378 -0.0021 31 1 0.8299 -2.7900 0.0000 32 1 4.7453 -4.9447 -0.0041 33 1 6.6943 -5.7167 -1.9614 34 1 7.3106 -4.0468 -1.9609 35 1 8.3662 -5.3847 -1.4480 36 1 10.0504 -6.7917 0.4196 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771879708.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:05 Heat of formation + Delta-G solvation = 27.362973 kcal Electronic energy + Delta-G solvation = -20129.645568 eV Core-core repulsion = 17000.129482 eV Total energy + Delta-G solvation = -3129.516086 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.122 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.21871 -38.67401 -37.65589 -35.40121 -34.28803 -33.00941 -31.28079 -29.53080 -27.72538 -26.74164 -25.57082 -24.82439 -21.98550 -21.30129 -20.71775 -20.21423 -17.76088 -16.91914 -16.70802 -15.72047 -15.58195 -15.42596 -15.13413 -14.41922 -14.09910 -13.75825 -13.52645 -13.40291 -12.98289 -12.80136 -12.44838 -12.20381 -11.81736 -11.77520 -11.35886 -11.18663 -11.01978 -10.95800 -10.78423 -10.65890 -10.45295 -10.34643 -9.40108 -9.17028 -8.97448 -8.66123 -7.90502 -7.08170 -6.32316 -4.42505 1.05231 1.40784 2.21332 3.17962 3.22637 3.24567 3.28103 3.57601 3.59760 4.02452 4.24441 4.54259 4.80798 4.92572 5.01750 5.18777 5.26829 5.39673 5.47134 5.58409 5.59854 5.83882 5.97324 6.16820 6.38513 6.51449 6.57922 6.68522 6.70810 6.75643 6.80153 7.05851 7.22464 7.25361 7.47532 7.51795 7.75789 7.93094 8.29496 8.60845 9.05175 9.25295 10.73854 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.032587 B = 0.004052 C = 0.003758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.037595 B = 6907.788939 C = 7449.124050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.104 4.104 3 C -0.106 4.106 4 C -0.135 4.135 5 C -0.078 4.078 6 C -0.026 4.026 7 C 0.129 3.871 8 N -0.648 5.648 9 C 0.545 3.455 10 O -0.538 6.538 11 C -0.148 4.148 12 N -0.068 5.068 13 N -0.478 5.478 14 C 0.267 3.733 15 H 0.061 0.939 16 C -0.152 4.152 17 C -0.542 4.542 18 H 0.067 0.933 19 C 0.072 3.928 20 N -0.883 5.883 21 Si 0.909 3.091 22 H -0.277 1.277 23 H -0.271 1.271 24 H -0.282 1.282 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.058 0.942 28 H 0.123 0.877 29 H 0.124 0.876 30 H 0.129 0.871 31 H 0.409 0.591 32 H 0.395 0.605 33 H 0.034 0.966 34 H 0.020 0.980 35 H 0.102 0.898 36 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.182 13.235 -1.325 18.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.108 4.108 3 C -0.126 4.126 4 C -0.154 4.154 5 C -0.098 4.098 6 C -0.032 4.032 7 C 0.028 3.972 8 N -0.290 5.290 9 C 0.336 3.664 10 O -0.415 6.415 11 C -0.316 4.316 12 N 0.090 4.910 13 N -0.221 5.221 14 C 0.167 3.833 15 H 0.079 0.921 16 C -0.211 4.211 17 C -0.581 4.581 18 H 0.085 0.915 19 C -0.132 4.132 20 N -0.520 5.520 21 Si 0.736 3.264 22 H -0.203 1.203 23 H -0.196 1.196 24 H -0.208 1.208 25 H 0.086 0.914 26 H 0.087 0.913 27 H 0.077 0.923 28 H 0.141 0.859 29 H 0.142 0.858 30 H 0.147 0.853 31 H 0.247 0.753 32 H 0.237 0.763 33 H 0.053 0.947 34 H 0.039 0.961 35 H 0.120 0.880 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -10.882 12.611 -1.353 16.712 hybrid contribution -1.387 -1.571 0.426 2.139 sum -12.269 11.040 -0.927 16.531 Atomic orbital electron populations 1.20674 0.91352 1.02495 1.02107 1.18954 0.95441 0.90215 1.06157 1.20642 0.94172 0.96166 1.01591 1.20904 0.93877 0.97588 1.03013 1.20557 1.00195 0.90006 0.99069 1.18260 0.91227 0.90788 1.02897 1.17915 0.92685 0.84385 1.02175 1.43143 1.09628 1.05081 1.71119 1.18939 0.85455 0.85957 0.76060 1.90820 1.86474 1.11852 1.52333 1.21412 0.87936 0.93458 1.28836 1.70972 1.20001 1.03346 0.96690 1.47676 1.13571 1.00267 1.60572 1.19354 0.73812 0.95087 0.95089 0.92120 1.22192 1.04661 0.98262 0.95989 1.21137 0.95494 1.03716 1.37743 0.91497 1.24836 0.94962 0.98364 0.95050 1.69863 0.99182 1.38920 1.43992 0.86311 0.78090 0.82410 0.79633 1.20280 1.19581 1.20799 0.91401 0.91278 0.92328 0.85875 0.85773 0.85280 0.75322 0.76294 0.94675 0.96078 0.88002 0.92161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.91 9.99 36.01 0.36 -0.55 16 2 C -0.10 -1.20 5.90 -104.40 -0.62 -1.81 16 3 C -0.11 -1.10 9.66 -39.58 -0.38 -1.48 16 4 C -0.13 -1.49 10.04 -39.56 -0.40 -1.89 16 5 C -0.08 -1.08 10.09 -39.36 -0.40 -1.48 16 6 C -0.03 -0.43 6.35 -104.84 -0.67 -1.10 16 7 C 0.13 1.86 6.85 -83.61 -0.57 1.28 16 8 N -0.65 -9.65 5.86 -10.81 -0.06 -9.71 16 9 C 0.54 10.40 8.36 -12.76 -0.11 10.29 16 10 O -0.54 -11.72 15.81 5.15 0.08 -11.64 16 11 C -0.15 -2.88 7.51 -80.33 -0.60 -3.48 16 12 N -0.07 -1.43 11.15 34.69 0.39 -1.04 16 13 N -0.48 -10.87 5.70 -5.88 -0.03 -10.90 16 14 C 0.27 6.53 3.15 -69.09 -0.22 6.32 16 15 H 0.06 1.58 8.14 -51.92 -0.42 1.16 16 16 C -0.15 -3.54 9.29 37.16 0.35 -3.19 16 17 C -0.54 -14.26 8.74 -34.44 -0.30 -14.56 16 18 H 0.07 1.77 7.79 -52.49 -0.41 1.36 16 19 C 0.07 1.88 5.30 -17.82 -0.09 1.78 16 20 N -0.88 -23.46 11.32 55.43 0.63 -22.83 16 21 Si 0.91 20.38 29.54 -169.99 -5.02 15.36 16 22 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 23 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 24 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 25 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.07 0.46 8.08 -51.93 -0.42 0.04 16 27 H 0.06 0.46 7.69 -51.93 -0.40 0.06 16 28 H 0.12 0.93 8.06 -52.48 -0.42 0.51 16 29 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16 30 H 0.13 1.71 8.06 -52.49 -0.42 1.28 16 31 H 0.41 4.86 8.60 -40.82 -0.35 4.51 16 32 H 0.40 9.17 5.97 -190.12 -1.13 8.04 16 33 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.10 2.53 6.07 -51.93 -0.32 2.21 16 36 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 LS Contribution 311.17 15.07 4.69 4.69 Total: -1.00 -28.45 311.17 -8.10 -36.56 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: -5.12 Total: 9.39 kcal Atomic # 6 Polarization: -6.22 SS G_CDS: -3.65 Total: -9.87 kcal Atomic # 7 Polarization: -45.41 SS G_CDS: 0.92 Total: -44.49 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: 0.08 Total: -11.64 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -28.45 -8.10 -36.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771879708.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.921 kcal (2) G-P(sol) polarization free energy of solvation -28.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.558 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds