Wall clock time and date at job start Mon Mar 30 2020 05:06:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30858 * 1 3 3 Si 1.86800 * 119.99629 * 2 1 4 4 H 1.48498 * 109.47177 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47273 * 299.99613 * 3 2 1 6 6 H 1.48497 * 109.47096 * 59.99681 * 3 2 1 7 7 C 1.39919 * 120.00379 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99779 * 193.28845 * 7 2 1 9 9 C 1.41179 * 119.99885 * 13.29274 * 7 2 1 10 10 C 1.40851 * 120.16829 * 208.66502 * 9 7 2 11 11 C 1.36406 * 119.81995 * 179.97438 * 10 9 7 12 12 C 1.39410 * 120.17380 * 359.97438 * 11 10 9 13 13 N 1.39592 * 119.82400 * 179.97438 * 12 11 10 14 14 C 1.34985 * 119.01799 * 289.90674 * 13 12 11 15 15 O 1.21227 * 121.23966 * 0.02562 * 14 13 12 16 16 C 1.51708 * 117.52860 * 180.02562 * 14 13 12 17 17 C 1.51699 * 116.22828 * 359.96370 * 16 14 13 18 18 O 1.21237 * 121.23718 * 180.29508 * 17 16 14 19 19 N 1.34996 * 117.52793 * 0.02562 * 17 16 14 20 20 C 1.33786 * 121.96775 * 0.02562 * 19 17 16 21 21 O 1.21485 * 117.61280 * 180.02562 * 20 19 17 22 22 C 1.39401 * 120.34678 * 0.28143 * 12 11 10 23 23 C 1.36403 * 120.17931 * 359.47696 * 22 12 11 24 24 H 0.96998 * 120.00426 * 0.02562 * 1 2 3 25 25 H 1.07997 * 120.08939 * 359.95934 * 10 9 7 26 26 H 1.07993 * 119.91607 * 180.02562 * 11 10 9 27 27 H 1.09004 * 108.11646 * 238.21749 * 16 14 13 28 28 H 1.08993 * 108.14352 * 121.73252 * 16 14 13 29 29 H 0.97003 * 119.01359 * 179.97438 * 19 17 16 30 30 H 1.08004 * 119.91256 * 179.74789 * 22 12 11 31 31 H 1.07999 * 120.09744 * 180.25570 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2425 1.6178 0.0000 4 1 3.7025 1.3466 0.0006 5 1 1.8838 2.3964 -1.2125 6 1 1.8836 2.3965 1.2124 7 6 2.0083 -1.2117 0.0005 8 1 3.0666 -1.2240 0.2155 9 6 1.3308 -2.4181 -0.2800 10 6 1.7878 -3.6312 0.2709 11 6 1.1275 -4.7926 -0.0045 12 6 0.0029 -4.7809 -0.8283 13 7 -0.6669 -5.9738 -1.1057 14 6 -0.0698 -6.8918 -1.8949 15 8 1.0316 -6.6977 -2.3627 16 6 -0.8282 -8.1755 -2.1748 17 6 -2.1964 -8.2997 -1.5314 18 8 -2.8783 -9.2895 -1.6903 19 7 -2.6241 -7.2697 -0.7709 20 6 -1.8819 -6.1728 -0.5819 21 8 -2.3441 -5.2939 0.1180 22 6 -0.4524 -3.5851 -1.3816 23 6 0.1940 -2.4147 -1.1118 24 1 -0.4851 0.8400 -0.0004 25 1 2.6587 -3.6418 0.9094 26 1 1.4763 -5.7235 0.4174 27 1 -0.2166 -9.0114 -1.8352 28 1 -0.9511 -8.2688 -3.2537 29 1 -3.4960 -7.3262 -0.3496 30 1 -1.3220 -3.5847 -2.0222 31 1 -0.1623 -1.4885 -1.5378 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000100441925.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:06:07 Heat of formation + Delta-G solvation = -62.614937 kcal Electronic energy + Delta-G solvation = -20437.188599 eV Core-core repulsion = 17070.219022 eV Total energy + Delta-G solvation = -3366.969577 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 274.079 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.24630 -39.62704 -38.82788 -37.50678 -35.18479 -34.92915 -33.36076 -30.94338 -29.73276 -29.14528 -25.51392 -23.90767 -23.34141 -21.40010 -21.13953 -19.33331 -18.74689 -17.49340 -17.33034 -17.06849 -16.59435 -15.40797 -15.05006 -14.92462 -14.64552 -14.63945 -14.31601 -14.07241 -13.38932 -12.89006 -12.32134 -12.27469 -11.99774 -11.64184 -11.26618 -11.16796 -11.01845 -10.81888 -10.57211 -10.43495 -10.19445 -10.03103 -9.83973 -9.42531 -9.09400 -7.70975 -7.46660 -6.89529 -4.53642 1.29742 2.05865 2.18371 2.50931 2.93615 2.97334 3.01323 3.02963 3.06924 3.21495 3.43796 3.83410 4.44767 4.56063 4.76757 4.93019 5.50780 5.77515 5.91755 6.07919 6.12574 6.15438 6.78569 6.90184 6.99815 7.09842 7.13683 7.31685 7.43322 7.51779 7.68444 7.82300 7.88038 8.07509 8.19882 8.46065 8.71173 8.78713 10.04334 Molecular weight = 274.08amu Principal moments of inertia in cm(-1) A = 0.040766 B = 0.004524 C = 0.004264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.686899 B = 6188.004834 C = 6565.327129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.785 5.785 2 C 0.073 3.927 3 Si 0.913 3.087 4 H -0.259 1.259 5 H -0.271 1.271 6 H -0.273 1.273 7 C -0.451 4.451 8 H 0.083 0.917 9 C 0.124 3.876 10 C -0.218 4.218 11 C -0.054 4.054 12 C -0.040 4.040 13 N -0.485 5.485 14 C 0.522 3.478 15 O -0.462 6.462 16 C -0.181 4.181 17 C 0.539 3.461 18 O -0.491 6.491 19 N -0.669 5.669 20 C 0.696 3.304 21 O -0.504 6.504 22 C -0.063 4.063 23 C -0.157 4.157 24 H 0.284 0.716 25 H 0.101 0.899 26 H 0.089 0.911 27 H 0.148 0.852 28 H 0.149 0.851 29 H 0.429 0.571 30 H 0.089 0.911 31 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.680 -9.622 -2.932 10.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.146 4.146 3 Si 0.738 3.262 4 H -0.182 1.182 5 H -0.196 1.196 6 H -0.198 1.198 7 C -0.479 4.479 8 H 0.101 0.899 9 C 0.121 3.879 10 C -0.238 4.238 11 C -0.073 4.073 12 C -0.128 4.128 13 N -0.225 5.225 14 C 0.310 3.690 15 O -0.331 6.331 16 C -0.224 4.224 17 C 0.326 3.674 18 O -0.363 6.363 19 N -0.340 5.340 20 C 0.398 3.602 21 O -0.373 6.373 22 C -0.083 4.083 23 C -0.177 4.177 24 H 0.095 0.905 25 H 0.119 0.881 26 H 0.107 0.893 27 H 0.166 0.834 28 H 0.166 0.834 29 H 0.271 0.729 30 H 0.107 0.893 31 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -2.701 -9.410 -2.985 10.235 hybrid contribution -0.232 0.592 0.238 0.679 sum -2.934 -8.818 -2.747 9.690 Atomic orbital electron populations 1.69826 1.07609 1.29587 1.33867 1.26001 0.94855 1.01620 0.92166 0.86168 0.80892 0.80485 0.78701 1.18247 1.19574 1.19818 1.19707 0.96896 0.90654 1.40662 0.89870 1.17735 0.90703 0.92183 0.87274 1.20626 1.03867 0.92643 1.06669 1.20100 0.94403 0.97111 0.95729 1.16718 1.00560 0.82361 1.13190 1.43272 1.15243 1.19229 1.44741 1.20738 0.86536 0.84000 0.77751 1.90803 1.18049 1.77038 1.47191 1.22458 0.93999 0.99446 1.06467 1.20731 0.87729 0.81883 0.77011 1.90828 1.57299 1.29272 1.58878 1.44464 1.22736 1.17207 1.49579 1.15701 0.81567 0.82229 0.80749 1.91077 1.68647 1.40092 1.37515 1.20249 0.97923 0.91989 0.98141 1.20902 0.99245 0.96128 1.01438 0.90534 0.88081 0.89251 0.83418 0.83381 0.72878 0.89288 0.85918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.62 10.96 55.55 0.61 -19.01 16 2 C 0.07 1.75 5.20 -17.34 -0.09 1.66 16 3 Si 0.91 17.85 29.58 -169.99 -5.03 12.83 16 4 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 5 H -0.27 -5.21 7.11 56.52 0.40 -4.80 16 6 H -0.27 -5.28 7.11 56.52 0.40 -4.87 16 7 C -0.45 -11.42 9.04 -37.84 -0.34 -11.76 16 8 H 0.08 2.01 7.88 -52.48 -0.41 1.60 16 9 C 0.12 3.20 5.54 -106.80 -0.59 2.60 16 10 C -0.22 -5.21 9.74 -39.25 -0.38 -5.59 16 11 C -0.05 -1.21 9.47 -39.81 -0.38 -1.58 16 12 C -0.04 -0.87 4.02 -83.46 -0.34 -1.21 16 13 N -0.48 -8.61 2.59 -64.31 -0.17 -8.78 16 14 C 0.52 7.91 7.69 -10.39 -0.08 7.83 16 15 O -0.46 -8.49 16.90 5.60 0.09 -8.40 16 16 C -0.18 -1.75 6.08 -28.05 -0.17 -1.92 16 17 C 0.54 5.89 8.15 -10.39 -0.08 5.80 16 18 O -0.49 -6.27 17.98 5.59 0.10 -6.17 16 19 N -0.67 -8.00 5.14 -15.89 -0.08 -8.08 16 20 C 0.70 11.42 8.15 -88.68 -0.72 10.69 16 21 O -0.50 -10.27 16.42 5.38 0.09 -10.18 16 22 C -0.06 -1.48 9.33 -39.81 -0.37 -1.85 16 23 C -0.16 -3.99 8.60 -39.25 -0.34 -4.33 16 24 H 0.28 6.41 8.30 -40.82 -0.34 6.07 16 25 H 0.10 2.23 8.06 -52.49 -0.42 1.81 16 26 H 0.09 1.80 8.06 -52.49 -0.42 1.37 16 27 H 0.15 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.15 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.43 4.32 8.80 -40.82 -0.36 3.96 16 30 H 0.09 1.93 8.06 -52.48 -0.42 1.51 16 31 H 0.12 3.18 6.30 -52.49 -0.33 2.85 16 LS Contribution 283.64 15.07 4.27 4.27 Total: -1.00 -30.63 283.64 -6.35 -36.97 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -2.35 Total: 6.20 kcal Atomic # 6 Polarization: 4.23 SS G_CDS: -3.89 Total: 0.35 kcal Atomic # 7 Polarization: -36.23 SS G_CDS: 0.36 Total: -35.87 kcal Atomic # 8 Polarization: -25.03 SS G_CDS: 0.28 Total: -24.75 kcal Atomic # 14 Polarization: 17.85 SS G_CDS: -5.03 Total: 12.83 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -30.63 -6.35 -36.97 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000100441925.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.641 kcal (2) G-P(sol) polarization free energy of solvation -30.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds