Wall clock time and date at job start Mon Mar 30 2020 05:42:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46509 * 111.00044 * 2 1 4 4 C 1.53291 * 108.67678 * 188.73791 * 3 2 1 5 5 C 1.52997 * 108.24360 * 297.58943 * 4 3 2 6 6 C 1.51415 * 110.82552 * 57.04135 * 5 4 3 7 7 H 1.08996 * 108.78912 * 188.66308 * 6 5 4 8 8 C 1.46834 * 110.99880 * 126.01646 * 2 1 3 9 9 H 1.08995 * 112.38745 * 305.27003 * 8 2 1 10 10 C 1.55908 * 106.55827 * 70.00737 * 8 2 1 11 11 C 1.54466 * 102.69020 * 78.93589 * 10 8 2 12 12 N 1.46564 * 112.70281 * 68.01922 * 6 5 4 13 13 S 1.65597 * 125.98916 * 31.05448 * 12 6 5 14 14 O 1.42102 * 106.40396 * 18.68424 * 13 12 6 15 15 O 1.42102 * 106.40373 * 151.60359 * 13 12 6 16 16 C 1.76199 * 107.21858 * 265.14527 * 13 12 6 17 17 H 1.07997 * 119.99737 * 354.72222 * 16 13 12 18 18 C 1.37881 * 119.99848 * 174.72349 * 16 13 12 19 19 N 1.31509 * 120.00072 * 359.97438 * 18 16 13 20 20 Si 1.86803 * 119.99834 * 179.97438 * 18 16 13 21 21 H 1.48499 * 109.47081 * 90.00024 * 20 18 16 22 22 H 1.48501 * 109.47096 * 210.00247 * 20 18 16 23 23 H 1.48500 * 109.46924 * 330.00043 * 20 18 16 24 24 H 1.08998 * 109.46995 * 56.04186 * 1 2 3 25 25 H 1.09002 * 109.47052 * 176.04501 * 1 2 3 26 26 H 1.09001 * 109.46976 * 296.04327 * 1 2 3 27 27 H 1.08992 * 109.60347 * 308.50100 * 3 2 1 28 28 H 1.09003 * 109.59889 * 68.82280 * 3 2 1 29 29 H 1.09006 * 109.70256 * 57.27745 * 4 3 2 30 30 H 1.08997 * 109.70736 * 177.89918 * 4 3 2 31 31 H 1.09003 * 109.20598 * 177.38282 * 5 4 3 32 32 H 1.08994 * 109.20433 * 296.74044 * 5 4 3 33 33 H 1.09000 * 110.76773 * 320.63410 * 10 8 2 34 34 H 1.08999 * 110.92763 * 197.30366 * 10 8 2 35 35 H 1.09003 * 109.89905 * 263.32067 * 11 10 8 36 36 H 1.08997 * 109.90343 * 142.09544 * 11 10 8 37 37 H 0.97003 * 119.99817 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9941 1.3678 0.0000 4 6 3.5100 1.3117 -0.2206 5 6 4.1367 0.5525 0.9506 6 6 3.5351 -0.8311 1.0789 7 1 3.8875 -1.2825 2.0063 8 6 1.9952 -0.8061 1.1088 9 1 1.6007 -0.4911 2.0748 10 6 1.6774 -2.2936 0.7666 11 6 2.7801 -2.6499 -0.2547 12 7 3.8941 -1.7097 -0.0379 13 16 5.3041 -1.6553 -0.9046 14 8 6.2363 -0.9355 -0.1095 15 8 5.5387 -2.9764 -1.3727 16 6 5.0010 -0.6681 -2.3322 17 1 4.0043 -0.3061 -2.5367 18 6 6.0364 -0.3577 -3.1882 19 7 7.2503 -0.7981 -2.9388 20 14 5.7150 0.6884 -4.7021 21 1 5.8969 2.1221 -4.3609 22 1 6.6681 0.3104 -5.7764 23 1 4.3245 0.4641 -5.1726 24 1 -0.3633 0.5740 -0.8524 25 1 -0.3633 -1.0252 -0.0709 26 1 -0.3633 0.4512 0.9233 27 1 1.5284 1.9382 -0.8035 28 1 1.7788 1.8421 0.9575 29 1 3.7265 0.7917 -1.1538 30 1 3.9133 2.3235 -0.2608 31 1 5.2105 0.4628 0.7863 32 1 3.9601 1.1065 1.8725 33 1 0.6892 -2.3838 0.3157 34 1 1.7547 -2.9222 1.6537 35 1 2.3954 -2.5417 -1.2689 36 1 3.1205 -3.6724 -0.0917 37 1 7.9786 -0.5800 -3.5413 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000720840887.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:58 Heat of formation + Delta-G solvation = -73.663385 kcal Electronic energy + Delta-G solvation = -21423.214587 eV Core-core repulsion = 18327.042959 eV Total energy + Delta-G solvation = -3096.171628 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 274.114 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.71241 -35.37569 -35.23214 -33.91427 -33.24234 -32.99925 -29.38975 -28.45910 -26.27598 -26.02259 -22.78104 -22.35212 -20.68116 -19.30779 -18.47405 -16.83356 -16.18448 -15.97132 -15.18922 -14.90373 -14.74276 -14.34364 -13.85779 -13.35417 -13.18301 -13.13518 -12.77914 -12.41929 -11.99996 -11.96263 -11.66425 -11.45873 -11.32231 -11.18035 -11.08845 -10.98937 -10.58545 -10.36550 -10.23212 -10.19449 -10.02548 -9.92398 -9.33130 -9.16821 -8.81682 -7.99843 -7.94585 -6.62227 -5.21398 2.35192 3.10537 3.17596 3.25187 4.10230 4.12919 4.58005 4.69621 4.83329 5.13850 5.27480 5.31395 5.42816 5.57471 5.64137 5.66695 5.68376 5.82346 5.85564 5.90765 6.02704 6.08716 6.10466 6.14253 6.33320 6.38598 6.41050 6.54408 6.60671 6.94982 7.11219 7.18353 7.39273 7.41846 7.45018 7.65584 8.11008 8.96788 10.30619 Molecular weight = 274.11amu Principal moments of inertia in cm(-1) A = 0.020761 B = 0.009188 C = 0.007845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.354365 B = 3046.717015 C = 3568.166364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.531 5.531 3 C 0.062 3.938 4 C -0.136 4.136 5 C -0.162 4.162 6 C 0.175 3.825 7 H 0.057 0.943 8 C 0.074 3.926 9 H 0.061 0.939 10 C -0.124 4.124 11 C 0.137 3.863 12 N -1.006 6.006 13 S 2.731 3.269 14 O -0.997 6.997 15 O -1.010 7.010 16 C -1.012 5.012 17 H 0.109 0.891 18 C 0.134 3.866 19 N -0.847 5.847 20 Si 0.916 3.084 21 H -0.268 1.268 22 H -0.277 1.277 23 H -0.262 1.262 24 H 0.064 0.936 25 H 0.068 0.932 26 H 0.017 0.983 27 H 0.069 0.931 28 H 0.024 0.976 29 H 0.108 0.892 30 H 0.063 0.937 31 H 0.116 0.884 32 H 0.060 0.940 33 H 0.078 0.922 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.057 0.943 37 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.313 2.828 6.365 14.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.256 5.256 3 C -0.065 4.065 4 C -0.173 4.173 5 C -0.200 4.200 6 C 0.067 3.933 7 H 0.075 0.925 8 C -0.036 4.036 9 H 0.079 0.921 10 C -0.163 4.163 11 C 0.011 3.989 12 N -0.841 5.841 13 S 2.833 3.167 14 O -0.988 6.988 15 O -1.000 7.000 16 C -1.145 5.145 17 H 0.127 0.873 18 C -0.083 4.083 19 N -0.477 5.477 20 Si 0.740 3.260 21 H -0.193 1.193 22 H -0.202 1.202 23 H -0.186 1.186 24 H 0.083 0.917 25 H 0.087 0.913 26 H 0.036 0.964 27 H 0.087 0.913 28 H 0.042 0.958 29 H 0.126 0.874 30 H 0.081 0.919 31 H 0.134 0.866 32 H 0.079 0.921 33 H 0.097 0.903 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.075 0.925 37 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -11.069 2.126 6.128 12.829 hybrid contribution -0.884 1.360 -0.433 1.679 sum -11.953 3.486 5.695 13.691 Atomic orbital electron populations 1.22380 0.88080 1.01951 0.99828 1.61470 1.06425 1.13477 1.44195 1.22068 0.96971 0.88323 0.99155 1.21956 0.92710 1.00751 1.01902 1.21910 1.05207 0.94281 0.98603 1.20552 0.92107 0.91013 0.89648 0.92527 1.22930 0.95506 0.93478 0.91669 0.92113 1.22932 0.99266 0.94874 0.99181 1.21417 0.86357 0.92157 0.98935 1.58869 1.35002 1.43288 1.46943 1.00012 0.69118 0.73775 0.73790 1.93271 1.59642 1.74157 1.71730 1.93348 1.83300 1.41324 1.82060 1.30653 1.03407 1.51126 1.29312 0.87268 1.24719 0.93194 0.92588 0.97798 1.69907 1.00755 1.39609 1.37478 0.86235 0.79318 0.80114 0.80335 1.19269 1.20188 1.18618 0.91679 0.91323 0.96406 0.91252 0.95761 0.87386 0.91859 0.86562 0.92103 0.90329 0.91202 0.91779 0.92482 0.90048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.41 60.07 0.57 0.86 16 2 N -0.53 -7.82 4.29 -232.56 -1.00 -8.82 16 3 C 0.06 0.92 5.49 -3.89 -0.02 0.90 16 4 C -0.14 -2.43 6.10 -26.58 -0.16 -2.59 16 5 C -0.16 -2.97 5.11 -27.53 -0.14 -3.11 16 6 C 0.17 3.11 2.92 -68.15 -0.20 2.92 16 7 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 8 C 0.07 1.07 3.07 -65.65 -0.20 0.87 16 9 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 10 C -0.12 -1.66 6.37 -24.41 -0.16 -1.82 16 11 C 0.14 2.44 6.93 -2.80 -0.02 2.42 16 12 N -1.01 -21.17 3.53 -106.04 -0.37 -21.55 16 13 S 2.73 73.52 4.79 -107.50 -0.51 73.01 16 14 O -1.00 -28.60 14.79 -57.17 -0.85 -29.44 16 15 O -1.01 -30.35 17.69 -57.17 -1.01 -31.36 16 16 C -1.01 -27.52 8.00 30.60 0.24 -27.28 16 17 H 0.11 2.79 6.50 -52.49 -0.34 2.44 16 18 C 0.13 3.72 5.46 -17.82 -0.10 3.63 16 19 N -0.85 -24.86 13.09 55.43 0.73 -24.14 16 20 Si 0.92 20.62 29.54 -169.99 -5.02 15.59 16 21 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 22 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 23 H -0.26 -5.74 7.11 56.52 0.40 -5.34 16 24 H 0.06 0.71 8.07 -51.93 -0.42 0.29 16 25 H 0.07 0.72 6.13 -51.93 -0.32 0.40 16 26 H 0.02 0.18 8.14 -51.93 -0.42 -0.24 16 27 H 0.07 0.95 8.04 -51.93 -0.42 0.53 16 28 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.11 2.27 4.48 -51.93 -0.23 2.04 16 30 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.12 2.55 5.19 -51.93 -0.27 2.28 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.08 0.92 6.01 -51.93 -0.31 0.60 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.29 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 293.91 15.07 4.43 4.43 Total: -1.00 -33.51 293.91 -9.05 -42.56 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -5.25 Total: 2.92 kcal Atomic # 6 Polarization: -23.01 SS G_CDS: -0.19 Total: -23.20 kcal Atomic # 7 Polarization: -53.86 SS G_CDS: -0.65 Total: -54.51 kcal Atomic # 8 Polarization: -58.95 SS G_CDS: -1.86 Total: -60.80 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.59 kcal Atomic # 16 Polarization: 73.52 SS G_CDS: -0.51 Total: 73.01 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -33.51 -9.05 -42.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720840887.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.106 kcal (2) G-P(sol) polarization free energy of solvation -33.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds