Wall clock time and date at job start Mon Mar 30 2020 05:42:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46509 * 111.00044 * 2 1 4 4 C 1.53291 * 108.67678 * 188.73791 * 3 2 1 5 5 C 1.52997 * 108.24360 * 297.58943 * 4 3 2 6 6 C 1.51415 * 110.82552 * 57.04135 * 5 4 3 7 7 H 1.08996 * 108.78912 * 188.66308 * 6 5 4 8 8 C 1.46834 * 110.99880 * 126.01646 * 2 1 3 9 9 H 1.08995 * 112.38745 * 305.27003 * 8 2 1 10 10 C 1.55908 * 106.55827 * 70.00737 * 8 2 1 11 11 C 1.54466 * 102.69020 * 78.93589 * 10 8 2 12 12 N 1.46564 * 112.70281 * 68.01922 * 6 5 4 13 13 S 1.65597 * 125.98916 * 31.05448 * 12 6 5 14 14 O 1.42102 * 106.40396 * 18.68424 * 13 12 6 15 15 O 1.42102 * 106.40373 * 151.60359 * 13 12 6 16 16 C 1.76199 * 107.21858 * 265.14527 * 13 12 6 17 17 H 1.07997 * 119.99737 * 354.72222 * 16 13 12 18 18 C 1.37881 * 119.99848 * 174.72349 * 16 13 12 19 19 N 1.31509 * 120.00072 * 359.97438 * 18 16 13 20 20 Si 1.86803 * 119.99834 * 179.97438 * 18 16 13 21 21 H 1.48499 * 109.47081 * 90.00024 * 20 18 16 22 22 H 1.48501 * 109.47096 * 210.00247 * 20 18 16 23 23 H 1.48500 * 109.46924 * 330.00043 * 20 18 16 24 24 H 1.08998 * 109.46995 * 56.04186 * 1 2 3 25 25 H 1.09002 * 109.47052 * 176.04501 * 1 2 3 26 26 H 1.09001 * 109.46976 * 296.04327 * 1 2 3 27 27 H 1.08992 * 109.60347 * 308.50100 * 3 2 1 28 28 H 1.09003 * 109.59889 * 68.82280 * 3 2 1 29 29 H 1.09006 * 109.70256 * 57.27745 * 4 3 2 30 30 H 1.08997 * 109.70736 * 177.89918 * 4 3 2 31 31 H 1.09003 * 109.20598 * 177.38282 * 5 4 3 32 32 H 1.08994 * 109.20433 * 296.74044 * 5 4 3 33 33 H 1.09000 * 110.76773 * 320.63410 * 10 8 2 34 34 H 1.08999 * 110.92763 * 197.30366 * 10 8 2 35 35 H 1.09003 * 109.89905 * 263.32067 * 11 10 8 36 36 H 1.08997 * 109.90343 * 142.09544 * 11 10 8 37 37 H 0.97003 * 119.99817 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9941 1.3678 0.0000 4 6 3.5100 1.3117 -0.2206 5 6 4.1367 0.5525 0.9506 6 6 3.5351 -0.8311 1.0789 7 1 3.8875 -1.2825 2.0063 8 6 1.9952 -0.8061 1.1088 9 1 1.6007 -0.4911 2.0748 10 6 1.6774 -2.2936 0.7666 11 6 2.7801 -2.6499 -0.2547 12 7 3.8941 -1.7097 -0.0379 13 16 5.3041 -1.6553 -0.9046 14 8 6.2363 -0.9355 -0.1095 15 8 5.5387 -2.9764 -1.3727 16 6 5.0010 -0.6681 -2.3322 17 1 4.0043 -0.3061 -2.5367 18 6 6.0364 -0.3577 -3.1882 19 7 7.2503 -0.7981 -2.9388 20 14 5.7150 0.6884 -4.7021 21 1 5.8969 2.1221 -4.3609 22 1 6.6681 0.3104 -5.7764 23 1 4.3245 0.4641 -5.1726 24 1 -0.3633 0.5740 -0.8524 25 1 -0.3633 -1.0252 -0.0709 26 1 -0.3633 0.4512 0.9233 27 1 1.5284 1.9382 -0.8035 28 1 1.7788 1.8421 0.9575 29 1 3.7265 0.7917 -1.1538 30 1 3.9133 2.3235 -0.2608 31 1 5.2105 0.4628 0.7863 32 1 3.9601 1.1065 1.8725 33 1 0.6892 -2.3838 0.3157 34 1 1.7547 -2.9222 1.6537 35 1 2.3954 -2.5417 -1.2689 36 1 3.1205 -3.6724 -0.0917 37 1 7.9786 -0.5800 -3.5413 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000720840887.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:57 Heat of formation + Delta-G solvation = -100.483353 kcal Electronic energy + Delta-G solvation = -21424.377588 eV Core-core repulsion = 18327.042959 eV Total energy + Delta-G solvation = -3097.334629 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 274.114 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.96753 -37.47866 -36.57419 -36.11947 -35.12645 -34.54099 -30.76245 -29.74936 -28.23326 -27.24218 -24.00510 -23.72561 -21.97097 -20.80046 -20.38350 -18.72693 -18.05063 -17.25709 -16.83912 -16.39825 -16.12890 -15.98485 -15.59225 -15.01502 -14.64563 -14.47252 -14.00673 -13.96255 -13.71492 -13.24615 -13.22137 -13.00892 -12.87766 -12.55878 -12.50903 -12.46445 -12.31905 -12.25662 -12.14934 -11.92486 -11.43147 -11.26083 -11.17895 -10.89651 -10.81796 -9.58918 -9.00516 -8.68598 -7.38198 0.36099 1.33483 1.34108 1.50073 2.22459 2.61709 2.91233 3.10504 3.56523 3.75075 3.86169 4.06160 4.19466 4.25497 4.34144 4.44512 4.52003 4.64192 4.67412 4.73348 4.76136 4.84484 4.92022 4.94266 5.00613 5.10246 5.18465 5.24088 5.25190 5.33190 5.49486 5.61740 5.70309 5.99355 6.03479 6.36057 6.39116 6.84032 8.25470 Molecular weight = 274.11amu Principal moments of inertia in cm(-1) A = 0.020761 B = 0.009188 C = 0.007845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.354365 B = 3046.717015 C = 3568.166364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.557 5.557 3 C 0.071 3.929 4 C -0.141 4.141 5 C -0.163 4.163 6 C 0.159 3.841 7 H 0.065 0.935 8 C 0.085 3.915 9 H 0.095 0.905 10 C -0.108 4.108 11 C 0.124 3.876 12 N -1.007 6.007 13 S 2.732 3.268 14 O -1.028 7.028 15 O -1.055 7.055 16 C -1.018 5.018 17 H 0.120 0.880 18 C 0.074 3.926 19 N -0.897 5.897 20 Si 0.984 3.016 21 H -0.253 1.253 22 H -0.266 1.266 23 H -0.250 1.250 24 H 0.067 0.933 25 H 0.079 0.921 26 H 0.035 0.965 27 H 0.078 0.922 28 H 0.046 0.954 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.092 0.908 33 H 0.104 0.896 34 H 0.094 0.906 35 H 0.054 0.946 36 H 0.052 0.948 37 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.546 4.027 6.895 17.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.282 5.282 3 C -0.057 4.057 4 C -0.178 4.178 5 C -0.202 4.202 6 C 0.052 3.948 7 H 0.083 0.917 8 C -0.025 4.025 9 H 0.112 0.888 10 C -0.147 4.147 11 C -0.001 4.001 12 N -0.846 5.846 13 S 2.836 3.164 14 O -1.018 7.018 15 O -1.046 7.046 16 C -1.152 5.152 17 H 0.138 0.862 18 C -0.139 4.139 19 N -0.529 5.529 20 Si 0.803 3.197 21 H -0.177 1.177 22 H -0.190 1.190 23 H -0.174 1.174 24 H 0.086 0.914 25 H 0.098 0.902 26 H 0.053 0.947 27 H 0.097 0.903 28 H 0.064 0.936 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.110 0.890 33 H 0.122 0.878 34 H 0.113 0.887 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -14.307 3.313 6.675 16.131 hybrid contribution 0.102 0.967 -0.519 1.102 sum -14.205 4.280 6.156 16.063 Atomic orbital electron populations 1.22417 0.85661 1.02995 1.00875 1.61419 1.08612 1.13394 1.44804 1.21951 0.94143 0.88943 1.00617 1.21918 0.95744 1.00294 0.99865 1.21865 1.02432 0.95506 1.00361 1.20930 0.95316 0.90040 0.88476 0.91698 1.22903 0.92259 0.94090 0.93228 0.88768 1.22937 0.98392 0.94556 0.98784 1.21725 0.86769 0.91390 1.00250 1.58335 1.34298 1.44810 1.47121 0.99517 0.70150 0.72772 0.73982 1.93238 1.62050 1.74349 1.72185 1.93279 1.84890 1.43342 1.83039 1.30864 1.04002 1.50719 1.29645 0.86233 1.25917 0.92719 0.93813 1.01405 1.70006 1.02068 1.41524 1.39306 0.85219 0.79874 0.78634 0.76015 1.17712 1.19037 1.17360 0.91374 0.90207 0.94666 0.90345 0.93594 0.90993 0.91446 0.91078 0.88965 0.87765 0.88744 0.92786 0.92918 0.89362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 9.41 127.69 1.20 1.71 16 2 N -0.56 -14.42 4.29 -889.69 -3.82 -18.24 16 3 C 0.07 1.87 5.49 86.48 0.47 2.35 16 4 C -0.14 -4.91 6.10 30.69 0.19 -4.72 16 5 C -0.16 -5.91 5.11 30.07 0.15 -5.76 16 6 C 0.16 5.47 2.92 44.81 0.13 5.60 16 7 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 8 C 0.08 2.13 3.07 46.29 0.14 2.27 16 9 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 10 C -0.11 -2.50 6.37 32.10 0.20 -2.29 16 11 C 0.12 4.30 6.93 86.71 0.60 4.91 16 12 N -1.01 -42.75 3.53 -489.41 -1.73 -44.47 16 13 S 2.73 153.42 4.79 -56.49 -0.27 153.15 16 14 O -1.03 -62.18 14.79 -128.00 -1.89 -64.07 16 15 O -1.06 -66.56 17.69 -128.00 -2.26 -68.82 16 16 C -1.02 -57.01 8.00 67.74 0.54 -56.47 16 17 H 0.12 6.23 6.50 -2.91 -0.02 6.21 16 18 C 0.07 4.17 5.46 84.66 0.46 4.63 16 19 N -0.90 -54.56 13.09 21.45 0.28 -54.28 16 20 Si 0.98 42.30 29.54 68.60 2.03 44.32 16 21 H -0.25 -10.19 7.11 99.48 0.71 -9.49 16 22 H -0.27 -10.86 7.11 99.48 0.71 -10.16 16 23 H -0.25 -10.17 7.11 99.48 0.71 -9.46 16 24 H 0.07 1.20 8.07 -2.39 -0.02 1.18 16 25 H 0.08 1.27 6.13 -2.39 -0.01 1.25 16 26 H 0.03 0.53 8.14 -2.39 -0.02 0.51 16 27 H 0.08 1.91 8.04 -2.39 -0.02 1.89 16 28 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.07 3.05 4.48 -2.38 -0.01 3.04 16 30 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 31 H 0.07 3.25 5.19 -2.39 -0.01 3.24 16 32 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 33 H 0.10 1.93 6.01 -2.39 -0.01 1.91 16 34 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.05 1.94 8.14 -2.39 -0.02 1.93 16 36 H 0.05 1.83 8.14 -2.39 -0.02 1.82 16 37 H 0.30 16.25 8.31 -92.71 -0.77 15.48 16 Total: -1.00 -76.89 293.91 -2.50 -79.39 By element: Atomic # 1 Polarization: 19.75 SS G_CDS: 1.07 Total: 20.82 kcal Atomic # 6 Polarization: -51.90 SS G_CDS: 4.10 Total: -47.80 kcal Atomic # 7 Polarization: -111.73 SS G_CDS: -5.26 Total: -116.99 kcal Atomic # 8 Polarization: -128.74 SS G_CDS: -4.16 Total: -132.89 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 2.03 Total: 44.32 kcal Atomic # 16 Polarization: 153.42 SS G_CDS: -0.27 Total: 153.15 kcal Total: -76.89 -2.50 -79.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720840887.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.089 kcal (2) G-P(sol) polarization free energy of solvation -76.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds