Wall clock time and date at job start Mon Mar 30 2020 05:02:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.36112 * 125.75767 * 137.69032 * 3 2 1 5 5 C 1.41836 * 106.56404 * 180.02562 * 4 3 2 6 6 C 1.47472 * 126.70142 * 179.97438 * 5 4 3 7 7 O 1.21602 * 120.00214 * 343.78065 * 6 5 4 8 8 N 1.34772 * 120.00114 * 163.78380 * 6 5 4 9 9 C 1.46501 * 119.99737 * 4.03053 * 8 6 5 10 10 C 1.50700 * 109.47323 * 85.51715 * 9 8 6 11 11 H 1.07994 * 119.99848 * 0.02562 * 10 9 8 12 12 C 1.37880 * 120.00118 * 179.97438 * 10 9 8 13 13 N 1.31514 * 119.99717 * 359.97438 * 12 10 9 14 14 Si 1.86796 * 120.00028 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.46997 * 60.00065 * 14 12 10 16 16 H 1.48504 * 109.47303 * 179.97438 * 14 12 10 17 17 H 1.48495 * 109.47181 * 300.00069 * 14 12 10 18 18 C 1.46501 * 120.00543 * 184.03397 * 8 6 5 19 19 C 1.52997 * 109.47106 * 85.32548 * 18 8 6 20 20 C 1.53005 * 117.50079 * 244.36209 * 19 18 8 21 21 C 1.52997 * 117.49634 * 175.70125 * 19 18 8 22 22 C 1.36739 * 106.59271 * 0.02562 * 5 4 3 23 23 O 1.33585 * 108.53382 * 359.73190 * 22 5 4 24 24 H 1.08004 * 126.71880 * 359.96936 * 4 3 2 25 25 H 1.09004 * 109.47302 * 205.51794 * 9 8 6 26 26 H 1.09006 * 109.47261 * 325.51798 * 9 8 6 27 27 H 0.97009 * 119.99744 * 179.97438 * 13 12 10 28 28 H 1.08995 * 109.47198 * 205.33461 * 18 8 6 29 29 H 1.09002 * 109.46259 * 325.33062 * 18 8 6 30 30 H 1.09002 * 115.54791 * 30.03765 * 19 18 8 31 31 H 1.09000 * 117.49281 * 0.02562 * 20 19 18 32 32 H 1.08997 * 117.49515 * 145.02288 * 20 19 18 33 33 H 1.09004 * 117.50093 * 214.98079 * 21 19 18 34 34 H 1.09001 * 117.50262 * 0.02562 * 21 19 18 35 35 H 1.08001 * 125.73479 * 179.97438 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3630 0.8178 -0.7435 5 6 4.7027 0.4732 -0.4301 6 6 5.9235 1.0847 -0.9872 7 8 5.8595 1.7578 -1.9979 8 7 7.1101 0.8975 -0.3763 9 6 7.2025 0.0154 0.7897 10 6 7.3910 -1.4073 0.3296 11 1 7.4377 -1.6318 -0.7257 12 6 7.5049 -2.4221 1.2560 13 7 7.4495 -2.1484 2.5412 14 14 7.7392 -4.1854 0.6858 15 1 8.9879 -4.2859 -0.1117 16 1 7.8340 -5.0795 1.8677 17 1 6.5827 -4.5925 -0.1520 18 6 8.3076 1.5762 -0.8781 19 6 8.3907 2.9785 -0.2719 20 6 8.2814 4.1687 -1.2271 21 6 9.6301 3.8154 -0.5951 22 6 4.6411 -0.5376 0.4887 23 8 3.3567 -0.8054 0.7400 24 1 3.0375 1.5790 -1.4371 25 1 8.0515 0.3138 1.4047 26 1 6.2860 0.0895 1.3750 27 1 7.5292 -2.8625 3.1930 28 1 9.1929 1.0058 -0.5974 29 1 8.2537 1.6524 -1.9641 30 1 7.9543 3.0881 0.7209 31 1 8.1498 3.9526 -2.2873 32 1 7.7733 5.0615 -0.8626 33 1 10.0088 4.4760 0.1849 34 1 10.3860 3.3671 -1.2399 35 1 5.4884 -1.0334 0.9389 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000865164893.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:57 Heat of formation + Delta-G solvation = 52.712890 kcal Electronic energy + Delta-G solvation = -20679.743360 eV Core-core repulsion = 17453.607867 eV Total energy + Delta-G solvation = -3226.135493 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 274.110 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.48753 -39.13498 -36.91261 -36.53959 -35.13906 -32.88442 -32.80055 -30.23666 -28.00594 -26.56396 -23.55464 -22.86491 -22.41716 -22.06309 -20.50161 -19.81642 -18.00790 -16.86158 -16.38774 -16.05445 -15.85169 -15.42610 -14.70306 -14.51764 -14.35845 -13.66506 -13.49450 -13.24648 -13.20914 -12.85913 -12.80092 -12.53915 -12.23829 -11.96044 -11.45968 -11.30805 -11.16026 -11.11462 -10.66519 -10.47160 -10.19415 -9.96686 -9.71772 -9.65024 -9.32248 -8.89290 -8.31874 -7.92003 -6.50016 -4.62364 1.27355 2.08654 2.21053 3.10285 3.17204 3.17556 3.19742 3.36657 3.64419 3.90357 4.09835 4.12200 4.51480 4.82120 4.95998 5.03600 5.18219 5.26191 5.38725 5.60991 5.73715 5.77732 5.81549 6.07467 6.10988 6.14105 6.30713 6.33466 6.42230 6.57117 6.64190 6.86455 7.15196 7.33869 7.37753 7.48573 7.68854 8.13590 8.51572 8.88014 9.08076 10.52709 Molecular weight = 274.11amu Principal moments of inertia in cm(-1) A = 0.010097 B = 0.008385 C = 0.004952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2772.448726 B = 3338.374238 C = 5652.983190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.404 5.404 2 C 0.305 3.695 3 C -0.010 4.010 4 C -0.064 4.064 5 C -0.251 4.251 6 C 0.591 3.409 7 O -0.563 6.563 8 N -0.589 5.589 9 C 0.214 3.786 10 C -0.557 4.557 11 H 0.070 0.930 12 C 0.068 3.932 13 N -0.880 5.880 14 Si 0.899 3.101 15 H -0.272 1.272 16 H -0.283 1.283 17 H -0.270 1.270 18 C 0.154 3.846 19 C -0.162 4.162 20 C -0.173 4.173 21 C -0.181 4.181 22 C 0.075 3.925 23 O -0.155 6.155 24 H 0.164 0.836 25 H 0.047 0.953 26 H 0.046 0.954 27 H 0.274 0.726 28 H 0.085 0.915 29 H 0.075 0.925 30 H 0.103 0.897 31 H 0.095 0.905 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.963 5.613 -2.190 6.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.083 5.083 2 C -0.009 4.009 3 C -0.061 4.061 4 C -0.087 4.087 5 C -0.256 4.256 6 C 0.380 3.620 7 O -0.445 6.445 8 N -0.318 5.318 9 C 0.094 3.906 10 C -0.595 4.595 11 H 0.089 0.911 12 C -0.138 4.138 13 N -0.516 5.516 14 Si 0.725 3.275 15 H -0.197 1.197 16 H -0.208 1.208 17 H -0.196 1.196 18 C 0.030 3.970 19 C -0.181 4.181 20 C -0.210 4.210 21 C -0.218 4.218 22 C 0.003 3.997 23 O -0.047 6.047 24 H 0.181 0.819 25 H 0.065 0.935 26 H 0.064 0.936 27 H 0.084 0.916 28 H 0.103 0.897 29 H 0.093 0.907 30 H 0.121 0.879 31 H 0.113 0.887 32 H 0.105 0.895 33 H 0.108 0.892 34 H 0.111 0.889 35 H 0.296 0.704 Dipole moment (debyes) X Y Z Total from point charges -0.908 5.641 -2.289 6.155 hybrid contribution 0.763 -0.938 -0.147 1.218 sum -0.145 4.703 -2.436 5.299 Atomic orbital electron populations 1.81273 1.10682 1.07937 1.08387 1.23594 0.89718 0.93870 0.93737 1.16322 0.84428 1.01173 1.04155 1.21745 0.90706 0.98319 0.97945 1.20355 0.94417 1.04476 1.06302 1.17113 0.82378 0.79555 0.82971 1.90685 1.86533 1.42242 1.25003 1.47923 1.06557 1.45473 1.31892 1.20000 0.99304 0.88223 0.83083 1.21599 1.52333 0.91246 0.94341 0.91134 1.25061 0.94042 1.00017 0.94729 1.69909 1.47056 1.34203 1.00391 0.86502 0.79489 0.82992 0.78527 1.19735 1.20788 1.19552 1.20864 0.87937 0.89724 0.98451 1.22791 1.01916 0.93076 1.00330 1.22962 0.99653 0.99207 0.99166 1.22923 0.91453 1.03760 1.03698 1.28310 0.82892 0.94617 0.93846 1.84138 1.17501 1.50116 1.52984 0.81853 0.93484 0.93639 0.91613 0.89717 0.90709 0.87859 0.88657 0.89515 0.89170 0.88901 0.70444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -6.53 18.54 41.84 0.78 -5.76 16 2 C 0.31 4.68 15.87 -22.47 -0.36 4.32 16 3 C -0.01 -0.15 7.04 -38.42 -0.27 -0.42 16 4 C -0.06 -1.02 10.68 -38.97 -0.42 -1.43 16 5 C -0.25 -4.62 5.91 -105.30 -0.62 -5.24 16 6 C 0.59 11.78 7.60 -12.50 -0.09 11.68 16 7 O -0.56 -12.12 16.60 5.28 0.09 -12.04 16 8 N -0.59 -11.27 2.48 -176.31 -0.44 -11.70 16 9 C 0.21 4.38 4.67 -5.19 -0.02 4.36 16 10 C -0.56 -12.42 7.32 -34.44 -0.25 -12.67 16 11 H 0.07 1.63 7.81 -52.49 -0.41 1.22 16 12 C 0.07 1.54 4.97 -17.82 -0.09 1.45 16 13 N -0.88 -20.87 13.29 55.43 0.74 -20.13 16 14 Si 0.90 18.36 29.54 -169.99 -5.02 13.34 16 15 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 16 H -0.28 -5.79 7.11 56.52 0.40 -5.38 16 17 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 18 C 0.15 2.58 5.65 -4.04 -0.02 2.56 16 19 C -0.16 -2.41 5.98 -90.62 -0.54 -2.95 16 20 C -0.17 -2.34 10.18 -26.69 -0.27 -2.61 16 21 C -0.18 -2.20 10.25 -26.69 -0.27 -2.48 16 22 C 0.08 1.38 9.58 30.19 0.29 1.67 16 23 O -0.15 -2.68 10.62 5.97 0.06 -2.61 16 24 H 0.16 2.28 8.06 -52.48 -0.42 1.86 16 25 H 0.05 1.01 8.04 -51.93 -0.42 0.59 16 26 H 0.05 0.95 4.69 -51.93 -0.24 0.70 16 27 H 0.27 6.27 8.31 -40.82 -0.34 5.93 16 28 H 0.08 1.38 8.04 -51.93 -0.42 0.96 16 29 H 0.07 1.29 7.25 -51.93 -0.38 0.91 16 30 H 0.10 1.61 8.14 -51.93 -0.42 1.18 16 31 H 0.09 1.34 8.03 -51.93 -0.42 0.92 16 32 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 33 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 35 H 0.28 5.63 3.04 -52.49 -0.16 5.47 16 LS Contribution 313.92 15.07 4.73 4.73 Total: -1.00 -24.38 313.92 -5.70 -30.08 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -3.69 Total: 5.87 kcal Atomic # 6 Polarization: 1.18 SS G_CDS: -2.95 Total: -1.77 kcal Atomic # 7 Polarization: -38.67 SS G_CDS: 1.08 Total: -37.59 kcal Atomic # 8 Polarization: -14.80 SS G_CDS: 0.15 Total: -14.65 kcal Atomic # 14 Polarization: 18.36 SS G_CDS: -5.02 Total: 13.34 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -24.38 -5.70 -30.08 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865164893.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.790 kcal (2) G-P(sol) polarization free energy of solvation -24.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds