Wall clock time and date at job start Mon Mar 30 2020 05:02:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.36112 * 125.75767 * 137.69032 * 3 2 1 5 5 C 1.41836 * 106.56404 * 180.02562 * 4 3 2 6 6 C 1.47472 * 126.70142 * 179.97438 * 5 4 3 7 7 O 1.21602 * 120.00214 * 343.78065 * 6 5 4 8 8 N 1.34772 * 120.00114 * 163.78380 * 6 5 4 9 9 C 1.46501 * 119.99737 * 4.03053 * 8 6 5 10 10 C 1.50700 * 109.47323 * 85.51715 * 9 8 6 11 11 H 1.07994 * 119.99848 * 0.02562 * 10 9 8 12 12 C 1.37880 * 120.00118 * 179.97438 * 10 9 8 13 13 N 1.31514 * 119.99717 * 359.97438 * 12 10 9 14 14 Si 1.86796 * 120.00028 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.46997 * 60.00065 * 14 12 10 16 16 H 1.48504 * 109.47303 * 179.97438 * 14 12 10 17 17 H 1.48495 * 109.47181 * 300.00069 * 14 12 10 18 18 C 1.46501 * 120.00543 * 184.03397 * 8 6 5 19 19 C 1.52997 * 109.47106 * 85.32548 * 18 8 6 20 20 C 1.53005 * 117.50079 * 244.36209 * 19 18 8 21 21 C 1.52997 * 117.49634 * 175.70125 * 19 18 8 22 22 C 1.36739 * 106.59271 * 0.02562 * 5 4 3 23 23 O 1.33585 * 108.53382 * 359.73190 * 22 5 4 24 24 H 1.08004 * 126.71880 * 359.96936 * 4 3 2 25 25 H 1.09004 * 109.47302 * 205.51794 * 9 8 6 26 26 H 1.09006 * 109.47261 * 325.51798 * 9 8 6 27 27 H 0.97009 * 119.99744 * 179.97438 * 13 12 10 28 28 H 1.08995 * 109.47198 * 205.33461 * 18 8 6 29 29 H 1.09002 * 109.46259 * 325.33062 * 18 8 6 30 30 H 1.09002 * 115.54791 * 30.03765 * 19 18 8 31 31 H 1.09000 * 117.49281 * 0.02562 * 20 19 18 32 32 H 1.08997 * 117.49515 * 145.02288 * 20 19 18 33 33 H 1.09004 * 117.50093 * 214.98079 * 21 19 18 34 34 H 1.09001 * 117.50262 * 0.02562 * 21 19 18 35 35 H 1.08001 * 125.73479 * 179.97438 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3630 0.8178 -0.7435 5 6 4.7027 0.4732 -0.4301 6 6 5.9235 1.0847 -0.9872 7 8 5.8595 1.7578 -1.9979 8 7 7.1101 0.8975 -0.3763 9 6 7.2025 0.0154 0.7897 10 6 7.3910 -1.4073 0.3296 11 1 7.4377 -1.6318 -0.7257 12 6 7.5049 -2.4221 1.2560 13 7 7.4495 -2.1484 2.5412 14 14 7.7392 -4.1854 0.6858 15 1 8.9879 -4.2859 -0.1117 16 1 7.8340 -5.0795 1.8677 17 1 6.5827 -4.5925 -0.1520 18 6 8.3076 1.5762 -0.8781 19 6 8.3907 2.9785 -0.2719 20 6 8.2814 4.1687 -1.2271 21 6 9.6301 3.8154 -0.5951 22 6 4.6411 -0.5376 0.4887 23 8 3.3567 -0.8054 0.7400 24 1 3.0375 1.5790 -1.4371 25 1 8.0515 0.3138 1.4047 26 1 6.2860 0.0895 1.3750 27 1 7.5292 -2.8625 3.1930 28 1 9.1929 1.0058 -0.5974 29 1 8.2537 1.6524 -1.9641 30 1 7.9543 3.0881 0.7209 31 1 8.1498 3.9526 -2.2873 32 1 7.7733 5.0615 -0.8626 33 1 10.0088 4.4760 0.1849 34 1 10.3860 3.3671 -1.2399 35 1 5.4884 -1.0334 0.9389 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000865164893.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:57 Heat of formation + Delta-G solvation = 42.010005 kcal Electronic energy + Delta-G solvation = -20680.207472 eV Core-core repulsion = 17453.607867 eV Total energy + Delta-G solvation = -3226.599605 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 274.110 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.89118 -40.64354 -38.13109 -37.83199 -36.72242 -34.52021 -34.24864 -31.63147 -29.61454 -28.01168 -25.23031 -24.22043 -23.84591 -23.11617 -21.78836 -21.15045 -19.50367 -18.57258 -17.88449 -17.45743 -17.24582 -16.89418 -16.27895 -15.97549 -15.64085 -15.02104 -14.78954 -14.55293 -14.51775 -14.39013 -14.22420 -14.13873 -13.61753 -13.38902 -12.92803 -12.78479 -12.56452 -12.30527 -12.26681 -12.08890 -11.76108 -11.27605 -11.11353 -10.95427 -10.74835 -10.62405 -9.73004 -9.48457 -8.25875 -6.42507 -0.06487 0.63001 0.89309 1.46849 1.51245 1.56100 1.85390 2.07352 2.19471 2.35052 2.47598 2.97291 3.02872 3.17193 3.56191 3.90713 3.96308 4.06434 4.14346 4.25400 4.43579 4.47470 4.74064 4.81874 4.84883 4.89444 4.98444 5.07332 5.13779 5.19114 5.32442 5.34336 5.64433 5.74395 5.84899 5.95836 6.11181 6.51679 6.77643 7.25094 7.36668 8.76067 Molecular weight = 274.11amu Principal moments of inertia in cm(-1) A = 0.010097 B = 0.008385 C = 0.004952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2772.448726 B = 3338.374238 C = 5652.983190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C 0.321 3.679 3 C 0.004 3.996 4 C -0.055 4.055 5 C -0.261 4.261 6 C 0.585 3.415 7 O -0.582 6.582 8 N -0.589 5.589 9 C 0.225 3.775 10 C -0.557 4.557 11 H 0.060 0.940 12 C 0.038 3.962 13 N -0.902 5.902 14 Si 0.944 3.056 15 H -0.274 1.274 16 H -0.281 1.281 17 H -0.270 1.270 18 C 0.152 3.848 19 C -0.182 4.182 20 C -0.173 4.173 21 C -0.156 4.156 22 C 0.071 3.929 23 O -0.158 6.158 24 H 0.186 0.814 25 H 0.035 0.965 26 H 0.047 0.953 27 H 0.275 0.725 28 H 0.085 0.915 29 H 0.069 0.931 30 H 0.094 0.906 31 H 0.088 0.912 32 H 0.096 0.904 33 H 0.108 0.892 34 H 0.104 0.896 35 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.863 6.045 -2.528 6.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.090 5.090 2 C 0.006 3.994 3 C -0.047 4.047 4 C -0.078 4.078 5 C -0.266 4.266 6 C 0.375 3.625 7 O -0.465 6.465 8 N -0.318 5.318 9 C 0.105 3.895 10 C -0.595 4.595 11 H 0.078 0.922 12 C -0.166 4.166 13 N -0.539 5.539 14 Si 0.770 3.230 15 H -0.199 1.199 16 H -0.207 1.207 17 H -0.195 1.195 18 C 0.029 3.971 19 C -0.202 4.202 20 C -0.210 4.210 21 C -0.193 4.193 22 C -0.001 4.001 23 O -0.050 6.050 24 H 0.204 0.796 25 H 0.053 0.947 26 H 0.064 0.936 27 H 0.084 0.916 28 H 0.104 0.896 29 H 0.087 0.913 30 H 0.112 0.888 31 H 0.106 0.894 32 H 0.114 0.886 33 H 0.127 0.873 34 H 0.122 0.878 35 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges -0.996 6.077 -2.627 6.695 hybrid contribution 0.765 -1.049 -0.052 1.300 sum -0.231 5.028 -2.680 5.702 Atomic orbital electron populations 1.81303 1.10868 1.08194 1.08626 1.23304 0.89226 0.93508 0.93376 1.16299 0.84458 1.00506 1.03441 1.21926 0.89439 0.98525 0.97958 1.20391 0.94945 1.04695 1.06555 1.17335 0.82897 0.79422 0.82806 1.90664 1.86855 1.43256 1.25772 1.47968 1.07237 1.45215 1.31358 1.19773 0.98724 0.87686 0.83317 1.21641 1.52025 0.92169 0.93705 0.92218 1.25520 0.93927 1.02385 0.94736 1.69965 1.48022 1.34912 1.00999 0.85789 0.79107 0.80085 0.78021 1.19925 1.20651 1.19531 1.20964 0.87057 0.90895 0.98153 1.22645 1.04960 0.92401 1.00156 1.22988 1.00942 0.98647 0.98458 1.23033 0.90674 1.02128 1.03475 1.27841 0.83081 0.94953 0.94186 1.84116 1.17179 1.50442 1.53285 0.79647 0.94685 0.93588 0.91578 0.89641 0.91288 0.88773 0.89367 0.88596 0.87329 0.87764 0.71921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -12.50 18.54 19.00 0.35 -12.14 16 2 C 0.32 9.17 15.87 88.33 1.40 10.57 16 3 C 0.00 0.12 7.04 23.02 0.16 0.28 16 4 C -0.06 -1.68 10.68 22.67 0.24 -1.44 16 5 C -0.26 -9.46 5.91 -20.31 -0.12 -9.58 16 6 C 0.59 23.24 7.60 86.68 0.66 23.90 16 7 O -0.58 -24.84 16.60 -4.04 -0.07 -24.91 16 8 N -0.59 -22.65 2.48 -829.98 -2.05 -24.70 16 9 C 0.23 9.34 4.67 85.63 0.40 9.74 16 10 C -0.56 -24.96 7.32 25.60 0.19 -24.77 16 11 H 0.06 2.77 7.81 -2.91 -0.02 2.75 16 12 C 0.04 1.73 4.97 84.66 0.42 2.15 16 13 N -0.90 -42.83 13.29 21.45 0.28 -42.54 16 14 Si 0.94 37.30 29.54 68.60 2.03 39.32 16 15 H -0.27 -10.84 7.11 99.48 0.71 -10.14 16 16 H -0.28 -11.00 7.11 99.48 0.71 -10.29 16 17 H -0.27 -10.60 7.11 99.48 0.71 -9.89 16 18 C 0.15 5.10 5.65 86.38 0.49 5.59 16 19 C -0.18 -5.29 5.98 -10.79 -0.06 -5.36 16 20 C -0.17 -4.45 10.18 30.62 0.31 -4.14 16 21 C -0.16 -3.47 10.25 30.62 0.31 -3.15 16 22 C 0.07 2.61 9.58 67.47 0.65 3.26 16 23 O -0.16 -5.29 10.62 -1.54 -0.02 -5.31 16 24 H 0.19 4.74 8.06 -2.91 -0.02 4.72 16 25 H 0.04 1.53 8.04 -2.38 -0.02 1.51 16 26 H 0.05 1.94 4.69 -2.38 -0.01 1.93 16 27 H 0.27 12.54 8.31 -92.70 -0.77 11.77 16 28 H 0.09 2.79 8.04 -2.39 -0.02 2.77 16 29 H 0.07 2.38 7.25 -2.39 -0.02 2.36 16 30 H 0.09 2.90 8.14 -2.39 -0.02 2.88 16 31 H 0.09 2.39 8.03 -2.39 -0.02 2.37 16 32 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 33 H 0.11 2.05 8.14 -2.38 -0.02 2.03 16 34 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.27 10.74 3.04 -2.91 -0.01 10.73 16 Total: -1.00 -50.11 313.92 6.71 -43.40 By element: Atomic # 1 Polarization: 18.70 SS G_CDS: 1.13 Total: 19.83 kcal Atomic # 6 Polarization: 2.00 SS G_CDS: 5.05 Total: 7.05 kcal Atomic # 7 Polarization: -77.97 SS G_CDS: -1.42 Total: -79.39 kcal Atomic # 8 Polarization: -30.13 SS G_CDS: -0.08 Total: -30.22 kcal Atomic # 14 Polarization: 37.30 SS G_CDS: 2.03 Total: 39.32 kcal Total: -50.11 6.71 -43.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865164893.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.412 kcal (2) G-P(sol) polarization free energy of solvation -50.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds