Wall clock time and date at job start Mon Mar 30 2020 04:49:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.46923 * 2 1 4 4 C 1.50694 * 109.47515 * 239.99885 * 2 1 3 5 5 H 1.08001 * 120.00080 * 245.62858 * 4 2 1 6 6 C 1.37886 * 120.00111 * 65.62011 * 4 2 1 7 7 N 1.31506 * 120.00248 * 196.57348 * 6 4 2 8 8 Si 1.86799 * 119.99316 * 16.85548 * 6 4 2 9 9 H 1.48512 * 109.46720 * 179.71853 * 8 6 4 10 10 H 1.48497 * 109.47349 * 299.72107 * 8 6 4 11 11 H 1.48499 * 109.47255 * 59.72373 * 8 6 4 12 12 S 1.81406 * 109.47119 * 119.99853 * 2 1 3 13 13 O 1.42099 * 108.57797 * 59.48906 * 12 2 1 14 14 O 1.42098 * 108.57963 * 190.51544 * 12 2 1 15 15 C 1.81400 * 101.91981 * 305.00141 * 12 2 1 16 16 C 1.50703 * 109.47085 * 180.02562 * 15 12 2 17 17 O 1.21283 * 119.99949 * 359.97438 * 16 15 12 18 18 N 1.34771 * 119.99999 * 180.02562 * 16 15 12 19 19 C 1.47031 * 125.64990 * 359.69224 * 18 16 15 20 20 C 1.54318 * 107.27421 * 180.96674 * 19 18 16 21 21 C 1.55160 * 102.86299 * 22.52644 * 20 19 18 22 22 C 1.47425 * 125.64808 * 179.97438 * 18 16 15 23 23 H 1.09000 * 109.47269 * 306.74462 * 1 2 3 24 24 H 1.09003 * 109.46960 * 66.74888 * 1 2 3 25 25 H 1.09000 * 109.46888 * 186.74095 * 1 2 3 26 26 H 0.97007 * 120.00153 * 356.24138 * 7 6 4 27 27 H 1.09003 * 109.47363 * 300.00044 * 15 12 2 28 28 H 1.09007 * 109.47149 * 59.99961 * 15 12 2 29 29 H 1.09000 * 109.87595 * 300.51263 * 19 18 16 30 30 H 1.08998 * 109.87800 * 61.67814 * 19 18 16 31 31 H 1.08993 * 110.92159 * 264.10689 * 20 19 18 32 32 H 1.08999 * 110.58665 * 140.78287 * 20 19 18 33 33 H 1.08997 * 110.99834 * 206.22364 * 21 20 19 34 34 H 1.08996 * 111.00393 * 82.37861 * 21 20 19 35 35 H 1.08995 * 110.37332 * 274.67334 * 22 18 16 36 36 H 1.08997 * 110.36467 * 36.89483 * 22 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.5764 -1.6384 -1.1338 6 6 1.7976 -0.1757 -2.4794 7 7 1.9342 -0.9247 -3.5517 8 14 1.2930 1.6149 -2.6489 9 1 1.1089 1.9434 -4.0854 10 1 0.0180 1.8408 -1.9220 11 1 2.3512 2.4839 -2.0741 12 16 2.1347 -0.8551 1.4812 13 8 1.6409 -2.1875 1.4681 14 8 3.5342 -0.6350 1.5915 15 6 1.2998 0.0577 2.8079 16 6 1.6911 -0.5246 4.1417 17 8 2.4575 -1.4632 4.1922 18 7 1.1888 -0.0029 5.2782 19 6 0.2589 1.1330 5.3620 20 6 -0.0192 1.3881 6.8583 21 6 1.2146 0.7527 7.5522 22 6 1.4852 -0.4728 6.6438 23 1 -0.3634 0.6148 0.8235 24 1 -0.3633 0.4057 -0.9442 25 1 -0.3633 -1.0206 0.1206 26 1 2.2527 -1.8372 -3.4686 27 1 1.5949 1.1063 2.7690 28 1 0.2202 -0.0209 2.6794 29 1 0.7112 2.0163 4.9111 30 1 -0.6720 0.8884 4.8504 31 1 -0.9371 0.8922 7.1737 32 1 -0.0678 2.4578 7.0621 33 1 0.9734 0.4401 8.5682 34 1 2.0620 1.4381 7.5468 35 1 0.8254 -1.2976 6.9128 36 1 2.5278 -0.7812 6.7209 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000304228708.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:46 Heat of formation + Delta-G solvation = -107.519541 kcal Electronic energy + Delta-G solvation = -19979.641927 eV Core-core repulsion = 16784.283524 eV Total energy + Delta-G solvation = -3195.358403 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 275.102 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.15761 -37.60919 -36.08161 -35.05365 -34.39374 -32.33264 -31.42137 -30.13376 -28.89470 -25.14585 -23.83851 -21.89864 -21.53545 -19.72397 -17.95614 -17.83878 -17.39127 -16.91887 -16.03028 -15.73470 -15.28584 -14.83858 -14.30769 -13.87953 -13.82251 -13.70199 -13.41641 -12.96194 -12.74477 -12.58965 -12.29772 -12.24816 -11.74807 -11.70429 -11.58808 -11.14836 -11.13050 -11.08867 -10.82822 -10.49691 -10.43585 -10.15897 -10.01931 -9.42261 -9.12182 -8.90200 -8.53274 -6.72451 -4.40150 0.73651 2.44783 2.73548 3.19906 3.28483 3.45350 3.65371 4.02639 4.19041 4.29645 4.40962 4.47497 4.60659 4.83327 4.89979 4.94672 5.00243 5.20348 5.32072 5.33932 5.35477 5.46563 5.52291 5.60110 5.76725 5.83684 5.94117 6.01658 6.05715 6.50654 6.91219 7.19191 7.39047 7.90482 8.10953 8.55768 9.30006 10.68994 Molecular weight = 275.10amu Principal moments of inertia in cm(-1) A = 0.032566 B = 0.005132 C = 0.004694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.580597 B = 5455.114877 C = 5963.545603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.413 4.413 3 H 0.085 0.915 4 C -0.600 4.600 5 H 0.073 0.927 6 C 0.049 3.951 7 N -0.884 5.884 8 Si 1.045 2.955 9 H -0.280 1.280 10 H -0.270 1.270 11 H -0.277 1.277 12 S 2.437 3.563 13 O -0.934 6.934 14 O -0.940 6.940 15 C -0.674 4.674 16 C 0.560 3.440 17 O -0.525 6.525 18 N -0.617 5.617 19 C 0.095 3.905 20 C -0.132 4.132 21 C -0.134 4.134 22 C 0.101 3.899 23 H 0.038 0.962 24 H 0.080 0.920 25 H 0.067 0.933 26 H 0.275 0.725 27 H 0.153 0.847 28 H 0.155 0.845 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.077 0.923 35 H 0.071 0.929 36 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.375 9.270 19.538 22.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.528 4.528 3 H 0.103 0.897 4 C -0.639 4.639 5 H 0.091 0.909 6 C -0.160 4.160 7 N -0.515 5.515 8 Si 0.871 3.129 9 H -0.205 1.205 10 H -0.196 1.196 11 H -0.203 1.203 12 S 2.616 3.384 13 O -0.931 6.931 14 O -0.937 6.937 15 C -0.796 4.796 16 C 0.348 3.652 17 O -0.401 6.401 18 N -0.353 5.353 19 C -0.028 4.028 20 C -0.170 4.170 21 C -0.172 4.172 22 C -0.021 4.021 23 H 0.057 0.943 24 H 0.098 0.902 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.170 0.830 28 H 0.173 0.827 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.097 0.903 32 H 0.103 0.897 33 H 0.104 0.896 34 H 0.096 0.904 35 H 0.089 0.911 36 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -6.793 9.150 18.546 21.768 hybrid contribution -0.190 -0.346 1.118 1.186 sum -6.983 8.805 19.664 22.649 Atomic orbital electron populations 1.22234 0.94458 1.02150 1.02553 1.27737 1.02329 1.08617 1.14144 0.89717 1.21270 1.42908 1.10466 0.89289 0.90937 1.25841 0.93732 1.05269 0.91157 1.70826 1.39498 1.10311 1.30903 0.84045 0.77245 0.74738 0.76828 1.20497 1.19646 1.20333 1.08332 0.75993 0.77165 0.76867 1.93463 1.81771 1.32281 1.85575 1.93465 1.28210 1.86464 1.85590 1.31213 1.17588 1.17564 1.13281 1.19046 0.79946 0.82539 0.83699 1.90859 1.34976 1.27676 1.86631 1.48353 1.47095 1.33985 1.05832 1.22123 0.93436 0.89277 0.97919 1.22645 0.98790 1.02003 0.93535 1.22809 0.98446 0.97065 0.98890 1.22303 1.02400 0.96863 0.80529 0.94349 0.90171 0.91416 0.91409 0.82950 0.82671 0.90899 0.90897 0.90281 0.89748 0.89586 0.90384 0.91106 0.89960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.93 8.38 37.16 0.31 -2.62 16 2 C -0.41 -9.17 2.32 -27.88 -0.06 -9.23 16 3 H 0.09 1.68 6.81 -51.93 -0.35 1.32 16 4 C -0.60 -16.64 8.83 -34.44 -0.30 -16.95 16 5 H 0.07 2.21 7.96 -52.49 -0.42 1.79 16 6 C 0.05 1.37 5.30 -17.82 -0.09 1.28 16 7 N -0.88 -26.22 13.70 55.43 0.76 -25.46 16 8 Si 1.04 23.18 26.27 -169.99 -4.47 18.72 16 9 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 10 H -0.27 -5.22 5.73 56.52 0.32 -4.90 16 11 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 12 S 2.44 53.93 3.43 -107.50 -0.37 53.57 16 13 O -0.93 -23.81 17.77 -59.52 -1.06 -24.86 16 14 O -0.94 -23.95 17.94 -59.54 -1.07 -25.02 16 15 C -0.67 -10.31 4.89 36.01 0.18 -10.13 16 16 C 0.56 9.61 7.87 -10.99 -0.09 9.53 16 17 O -0.53 -11.43 15.88 2.55 0.04 -11.39 16 18 N -0.62 -7.82 3.33 -170.51 -0.57 -8.39 16 19 C 0.10 0.80 6.48 -3.06 -0.02 0.78 16 20 C -0.13 -0.76 6.95 -24.90 -0.17 -0.93 16 21 C -0.13 -0.88 7.08 -24.57 -0.17 -1.05 16 22 C 0.10 1.05 6.91 -2.52 -0.02 1.03 16 23 H 0.04 0.52 6.81 -51.93 -0.35 0.16 16 24 H 0.08 1.58 4.82 -51.93 -0.25 1.32 16 25 H 0.07 1.29 8.00 -51.93 -0.42 0.87 16 26 H 0.28 8.21 8.73 -40.82 -0.36 7.85 16 27 H 0.15 1.74 8.14 -51.92 -0.42 1.32 16 28 H 0.16 1.84 6.94 -51.92 -0.36 1.48 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.08 0.95 8.03 -51.93 -0.42 0.53 16 LS Contribution 306.52 15.07 4.62 4.62 Total: -1.00 -37.84 306.52 -7.73 -45.57 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: -5.18 Total: 0.95 kcal Atomic # 6 Polarization: -27.85 SS G_CDS: -0.45 Total: -28.30 kcal Atomic # 7 Polarization: -34.04 SS G_CDS: 0.19 Total: -33.85 kcal Atomic # 8 Polarization: -59.19 SS G_CDS: -2.09 Total: -61.27 kcal Atomic # 14 Polarization: 23.18 SS G_CDS: -4.47 Total: 18.72 kcal Atomic # 16 Polarization: 53.93 SS G_CDS: -0.37 Total: 53.57 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -37.84 -7.73 -45.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000304228708.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.945 kcal (2) G-P(sol) polarization free energy of solvation -37.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds