Wall clock time and date at job start Mon Mar 30 2020 04:54:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47140 * 2 1 4 4 C 1.50706 * 109.47430 * 240.00158 * 2 1 3 5 5 H 1.07999 * 120.00193 * 240.00552 * 4 2 1 6 6 C 1.37879 * 119.99398 * 59.99633 * 4 2 1 7 7 N 1.31514 * 119.99350 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 120.00608 * 0.02562 * 6 4 2 9 9 H 1.48493 * 109.47326 * 270.00340 * 8 6 4 10 10 H 1.48506 * 109.46545 * 30.00090 * 8 6 4 11 11 H 1.48498 * 109.47210 * 149.99801 * 8 6 4 12 12 N 1.46500 * 109.47204 * 120.00127 * 2 1 3 13 13 C 1.46497 * 120.00246 * 60.00246 * 12 2 1 14 14 C 1.37987 * 119.99978 * 239.99294 * 12 2 1 15 15 N 1.33005 * 120.07194 * 359.73488 * 14 12 2 16 16 C 1.32226 * 119.93082 * 179.74150 * 15 14 12 17 17 Cl 1.73600 * 119.96955 * 180.26907 * 16 15 14 18 18 N 1.32445 * 120.06984 * 0.52423 * 16 15 14 19 19 C 1.32444 * 120.13798 * 359.74469 * 18 16 15 20 20 Cl 1.73600 * 119.96151 * 179.97438 * 19 18 16 21 21 N 1.32226 * 120.07620 * 359.97438 * 19 18 16 22 22 H 1.09000 * 109.47140 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47045 * 299.99907 * 1 2 3 24 24 H 1.09001 * 109.46922 * 59.99700 * 1 2 3 25 25 H 0.97005 * 119.99661 * 179.97438 * 7 6 4 26 26 H 1.09004 * 109.47322 * 89.99723 * 13 12 2 27 27 H 1.08998 * 109.47658 * 209.99981 * 13 12 2 28 28 H 1.09003 * 109.46530 * 330.00118 * 13 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2392 -2.4827 7 7 2.1373 -0.8595 -3.5565 8 14 0.6258 1.2799 -2.6541 9 1 -0.8021 0.8745 -2.6992 10 1 0.8491 2.1773 -1.4922 11 1 0.9771 1.9954 -3.9070 12 7 2.0183 -0.6906 1.1961 13 6 1.6645 -2.0932 1.4280 14 6 2.8118 -0.0201 2.1044 15 7 3.1384 1.2517 1.8926 16 6 3.8946 1.8931 2.7673 17 17 4.3158 3.5551 2.4954 18 7 4.3354 1.2674 3.8482 19 6 4.0162 -0.0006 4.0592 20 17 4.5970 -0.8165 5.4772 21 7 3.2557 -0.6458 3.1910 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 1.9026 -0.5282 -4.4376 26 1 2.4158 -2.7377 0.9716 27 1 1.6239 -2.2853 2.5001 28 1 0.6905 -2.3002 0.9846 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063097708.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:17 Heat of formation + Delta-G solvation = 78.587455 kcal Electronic energy + Delta-G solvation = -17054.347636 eV Core-core repulsion = 14000.925546 eV Total energy + Delta-G solvation = -3053.422089 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 276.024 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.47897 -37.63157 -37.20926 -36.75979 -33.80751 -33.44734 -32.31521 -30.30762 -26.95061 -25.34742 -24.95953 -23.57761 -20.64937 -18.82202 -17.97947 -16.87214 -16.09812 -15.75692 -15.34543 -14.94203 -14.10446 -13.99244 -13.62396 -13.00173 -12.97015 -12.40573 -12.01047 -11.96946 -11.78217 -11.63396 -11.45483 -11.38431 -10.81438 -10.72296 -10.33025 -10.29593 -9.78603 -9.70485 -9.64073 -9.34593 -8.77533 -7.81359 -6.28405 -4.31843 0.75133 0.92480 1.11882 1.56962 2.90380 3.13135 3.27539 3.27906 3.78088 4.21040 4.21804 4.23839 5.02588 5.33829 5.76236 5.89799 5.96725 6.11010 6.17270 6.26615 6.37569 6.42655 6.66948 6.84483 7.27141 7.41217 7.62290 8.22231 8.31921 8.71911 9.29435 10.83821 Molecular weight = 276.02amu Principal moments of inertia in cm(-1) A = 0.020337 B = 0.006303 C = 0.005210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.489852 B = 4440.931941 C = 5372.610317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.233 3.767 3 H 0.075 0.925 4 C -0.535 4.535 5 H 0.081 0.919 6 C 0.081 3.919 7 N -0.888 5.888 8 Si 0.881 3.119 9 H -0.275 1.275 10 H -0.260 1.260 11 H -0.291 1.291 12 N -0.517 5.517 13 C 0.098 3.902 14 C 0.622 3.378 15 N -0.578 5.578 16 C 0.460 3.540 17 Cl 0.040 6.960 18 N -0.595 5.595 19 C 0.460 3.540 20 Cl 0.036 6.964 21 N -0.596 5.596 22 H 0.060 0.940 23 H 0.035 0.965 24 H 0.057 0.943 25 H 0.268 0.732 26 H 0.062 0.938 27 H 0.072 0.928 28 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.835 2.850 13.838 14.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.131 3.869 3 H 0.093 0.907 4 C -0.573 4.573 5 H 0.099 0.901 6 C -0.123 4.123 7 N -0.525 5.525 8 Si 0.710 3.290 9 H -0.202 1.202 10 H -0.185 1.185 11 H -0.219 1.219 12 N -0.225 5.225 13 C -0.045 4.045 14 C 0.260 3.740 15 N -0.312 5.312 16 C 0.155 3.845 17 Cl 0.068 6.932 18 N -0.331 5.331 19 C 0.155 3.845 20 Cl 0.064 6.936 21 N -0.331 5.331 22 H 0.079 0.921 23 H 0.054 0.946 24 H 0.075 0.925 25 H 0.078 0.922 26 H 0.081 0.919 27 H 0.091 0.909 28 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 0.699 2.725 13.446 13.737 hybrid contribution -0.399 0.806 -0.201 0.921 sum 0.299 3.530 13.244 13.710 Atomic orbital electron populations 1.22508 0.98316 1.01594 0.99762 1.19685 0.90458 0.95373 0.81341 0.90739 1.21049 1.33509 1.14667 0.88112 0.90129 1.24823 0.95499 0.96580 0.95444 1.69859 1.44563 1.39958 0.98085 0.86953 0.80465 0.83705 0.77886 1.20226 1.18505 1.21857 1.46914 1.44543 1.11568 1.19492 1.21713 1.01606 0.79662 1.01483 1.19108 0.85963 0.83889 0.84990 1.68108 1.20887 1.09588 1.32607 1.22703 0.87047 0.89932 0.84786 1.98446 1.90766 1.08806 1.95207 1.67915 1.31442 1.09856 1.23857 1.22627 0.87423 0.85475 0.88948 1.98439 1.85724 1.76565 1.32869 1.68028 1.19593 1.39696 1.05795 0.92129 0.94577 0.92470 0.92158 0.91945 0.90919 0.90082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.26 8.65 37.16 0.32 -2.94 15 2 C 0.23 5.20 2.25 -69.08 -0.16 5.04 15 3 H 0.07 1.79 5.86 -51.93 -0.30 1.48 15 4 C -0.54 -13.99 8.95 -34.44 -0.31 -14.30 15 5 H 0.08 2.31 7.89 -52.49 -0.41 1.90 15 6 C 0.08 2.18 5.45 -17.82 -0.10 2.08 15 7 N -0.89 -25.67 13.96 55.43 0.77 -24.89 15 8 Si 0.88 20.47 24.37 -169.99 -4.14 16.33 15 9 H -0.28 -6.14 6.87 56.52 0.39 -5.75 15 10 H -0.26 -5.86 6.53 56.52 0.37 -5.49 15 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 15 12 N -0.52 -10.36 2.84 -177.45 -0.50 -10.87 15 13 C 0.10 1.63 9.69 59.85 0.58 2.21 15 14 C 0.62 12.32 8.19 -322.08 -2.64 9.68 15 15 N -0.58 -11.57 8.98 -12.39 -0.11 -11.69 15 16 C 0.46 8.14 8.25 -91.22 -0.75 7.38 15 17 Cl 0.04 0.58 29.30 -51.86 -1.52 -0.93 15 18 N -0.60 -10.11 10.48 -10.07 -0.11 -10.22 15 19 C 0.46 7.60 8.25 -91.22 -0.75 6.85 15 20 Cl 0.04 0.47 29.30 -51.86 -1.52 -1.05 15 21 N -0.60 -10.71 9.25 -12.39 -0.11 -10.82 15 22 H 0.06 1.12 6.66 -51.93 -0.35 0.78 15 23 H 0.04 0.64 8.14 -51.93 -0.42 0.22 15 24 H 0.06 1.19 3.27 -51.93 -0.17 1.02 15 25 H 0.27 7.28 8.31 -40.82 -0.34 6.94 15 26 H 0.06 1.07 8.14 -51.93 -0.42 0.65 15 27 H 0.07 1.07 7.37 -51.93 -0.38 0.69 15 28 H 0.08 1.27 6.43 -51.93 -0.33 0.93 15 LS Contribution 270.75 15.07 4.08 4.08 Total: -1.00 -28.20 270.75 -8.94 -37.14 By element: Atomic # 1 Polarization: -1.11 SS G_CDS: -1.98 Total: -3.09 kcal Atomic # 6 Polarization: 19.82 SS G_CDS: -3.80 Total: 16.01 kcal Atomic # 7 Polarization: -68.42 SS G_CDS: -0.06 Total: -68.48 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -4.14 Total: 16.33 kcal Atomic # 17 Polarization: 1.05 SS G_CDS: -3.04 Total: -1.99 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -28.20 -8.94 -37.14 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063097708.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.729 kcal (2) G-P(sol) polarization free energy of solvation -28.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds