Wall clock time and date at job start Mon Mar 30 2020 04:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46895 * 108.89844 * 2 1 4 4 C 1.46904 * 111.00011 * 59.29613 * 3 2 1 5 5 C 1.50700 * 109.47192 * 180.02562 * 4 3 2 6 6 O 1.21293 * 119.99810 * 0.02562 * 5 4 3 7 7 N 1.34777 * 119.99675 * 180.28082 * 5 4 3 8 8 C 1.37102 * 119.99634 * 179.72687 * 7 5 4 9 9 H 1.08002 * 119.99868 * 359.97438 * 8 7 5 10 10 C 1.38945 * 119.99860 * 179.97438 * 8 7 5 11 11 N 1.31414 * 119.99894 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 119.99956 * 179.97438 * 10 8 7 13 13 H 1.48494 * 109.47230 * 0.02562 * 12 10 8 14 14 H 1.48493 * 109.46892 * 120.00602 * 12 10 8 15 15 H 1.48503 * 109.46797 * 240.00208 * 12 10 8 16 16 C 1.52382 * 108.92393 * 241.33011 * 2 1 3 17 17 C 1.54212 * 112.29566 * 239.39494 * 16 2 1 18 18 S 1.83821 * 102.86282 * 25.04237 * 17 16 2 19 19 O 1.42102 * 109.80882 * 77.68839 * 18 17 16 20 20 O 1.42105 * 109.81236 * 212.03213 * 18 17 16 21 21 C 1.54217 * 108.92657 * 118.67027 * 2 1 3 22 22 H 1.08997 * 109.46779 * 60.69695 * 1 2 3 23 23 H 1.08994 * 109.47519 * 180.70461 * 1 2 3 24 24 H 1.09003 * 109.46771 * 300.69975 * 1 2 3 25 25 H 1.00893 * 111.00470 * 183.25602 * 3 2 1 26 26 H 1.09009 * 109.46542 * 60.00300 * 4 3 2 27 27 H 1.08998 * 109.47050 * 300.00834 * 4 3 2 28 28 H 0.97001 * 120.00485 * 359.71840 * 7 5 4 29 29 H 0.97004 * 119.99542 * 179.97438 * 11 10 8 30 30 H 1.08997 * 108.92435 * 0.13444 * 16 2 1 31 31 H 1.08995 * 108.92966 * 118.78720 * 16 2 1 32 32 H 1.09003 * 110.73493 * 143.38913 * 17 16 2 33 33 H 1.09004 * 110.73524 * 266.51979 * 17 16 2 34 34 H 1.09000 * 110.73476 * 213.90336 * 21 2 1 35 35 H 1.08997 * 110.73279 * 337.21856 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0058 1.3898 0.0000 4 6 1.5138 2.1147 1.1792 5 6 2.0206 3.5334 1.1443 6 8 2.7222 3.9044 0.2271 7 7 1.6984 4.3886 2.1350 8 6 2.1642 5.6778 2.1061 9 1 2.7895 6.0079 1.2898 10 6 1.8316 6.5596 3.1271 11 7 1.0711 6.1577 4.1207 12 14 2.4667 8.3159 3.0882 13 1 3.2962 8.5155 1.8728 14 1 1.3184 9.2570 3.0633 15 1 3.2900 8.5714 4.2974 16 6 2.0242 -0.6916 -1.2647 17 6 2.9011 -1.9215 -0.9544 18 16 2.3256 -2.4230 0.7178 19 8 1.0896 -3.1164 0.6139 20 8 3.4048 -2.9890 1.4489 21 6 2.0302 -0.6999 1.2799 22 1 -0.3633 0.5030 -0.8962 23 1 -0.3634 -1.0275 0.0126 24 1 -0.3633 0.5247 0.8837 25 1 3.0126 1.4273 -0.0535 26 1 1.8719 1.6226 2.0836 27 1 0.4238 2.1183 1.1748 28 1 1.1370 4.0921 2.8683 29 1 0.8393 6.7733 4.8336 30 1 1.1635 -1.0103 -1.8527 31 1 2.6085 0.0180 -1.8504 32 1 2.7216 -2.7161 -1.6787 33 1 3.9563 -1.6487 -0.9367 34 1 2.9557 -0.2445 1.6322 35 1 1.2663 -0.6749 2.0570 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044930647.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:00 Heat of formation + Delta-G solvation = -98.220721 kcal Electronic energy + Delta-G solvation = -19748.843108 eV Core-core repulsion = 16488.462021 eV Total energy + Delta-G solvation = -3260.381087 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 276.098 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.29699 -37.82539 -37.18463 -36.20865 -34.07180 -33.03516 -31.26357 -30.14537 -28.04765 -26.91433 -24.77985 -23.41745 -19.76999 -19.41013 -19.02557 -17.95555 -17.24550 -16.55930 -16.23576 -15.84614 -15.41416 -14.87115 -14.61012 -14.42173 -13.96652 -13.84839 -13.61125 -13.36568 -12.81723 -12.42383 -12.35196 -12.28020 -12.01473 -11.93192 -11.81222 -11.59141 -11.31181 -11.18419 -11.05902 -10.83645 -10.44899 -10.37898 -10.26960 -9.57055 -8.58471 -8.24011 -8.01949 -6.46715 -3.87791 -0.17273 2.22038 3.13059 3.24158 3.30946 3.34195 3.67880 3.83271 3.85955 4.15360 4.23899 4.43512 4.45158 4.58070 4.65314 5.04560 5.12626 5.19804 5.27879 5.36836 5.55873 5.58000 5.64905 5.73365 5.88524 5.97434 6.12620 6.20394 7.00997 7.45576 7.50806 8.00868 8.55114 9.12699 9.48362 9.99108 10.70952 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.039135 B = 0.003685 C = 0.003619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.295188 B = 7596.128566 C = 7735.349196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.122 3.878 3 N -0.646 5.646 4 C 0.042 3.958 5 C 0.439 3.561 6 O -0.584 6.584 7 N -0.562 5.562 8 C -0.300 4.300 9 H 0.104 0.896 10 C 0.023 3.977 11 N -0.901 5.901 12 Si 0.930 3.070 13 H -0.268 1.268 14 H -0.281 1.281 15 H -0.281 1.281 16 C -0.114 4.114 17 C -0.577 4.577 18 S 2.377 3.623 19 O -0.931 6.931 20 O -0.942 6.942 21 C -0.616 4.616 22 H 0.076 0.924 23 H 0.072 0.928 24 H 0.068 0.932 25 H 0.352 0.648 26 H 0.050 0.950 27 H 0.092 0.908 28 H 0.392 0.608 29 H 0.271 0.729 30 H 0.094 0.906 31 H 0.105 0.895 32 H 0.135 0.865 33 H 0.136 0.864 34 H 0.139 0.861 35 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.298 -15.540 -6.366 16.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.028 3.972 3 N -0.278 5.278 4 C -0.090 4.090 5 C 0.224 3.776 6 O -0.469 6.469 7 N -0.199 5.199 8 C -0.430 4.430 9 H 0.122 0.878 10 C -0.179 4.179 11 N -0.542 5.542 12 Si 0.757 3.243 13 H -0.192 1.192 14 H -0.207 1.207 15 H -0.207 1.207 16 C -0.152 4.152 17 C -0.707 4.707 18 S 2.561 3.439 19 O -0.928 6.928 20 O -0.939 6.939 21 C -0.747 4.747 22 H 0.095 0.905 23 H 0.090 0.910 24 H 0.087 0.913 25 H 0.173 0.827 26 H 0.068 0.932 27 H 0.110 0.890 28 H 0.225 0.775 29 H 0.081 0.919 30 H 0.112 0.888 31 H 0.124 0.876 32 H 0.154 0.846 33 H 0.154 0.846 34 H 0.157 0.843 35 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -0.503 -15.855 -6.774 17.249 hybrid contribution 0.587 1.191 0.978 1.649 sum 0.084 -14.664 -5.796 15.768 Atomic orbital electron populations 1.22261 0.92093 1.02980 1.04112 1.21155 0.97253 0.89689 0.89099 1.60374 1.17203 1.09037 1.41234 1.21826 1.01476 0.94031 0.91680 1.19784 0.86138 0.86827 0.84807 1.90526 1.41837 1.78305 1.36221 1.41871 1.45714 1.10783 1.21525 1.19755 1.28919 0.86019 1.08293 0.87835 1.25271 0.96843 1.00468 0.95307 1.69620 1.36582 1.36796 1.11202 0.85794 0.78535 0.81621 0.78364 1.19200 1.20704 1.20736 1.21768 1.00377 0.95117 0.97986 1.30384 1.10065 1.07795 1.22478 1.09463 0.75953 0.78769 0.79724 1.93626 1.43018 1.70171 1.85943 1.93610 1.54792 1.76007 1.69510 1.31281 1.11732 1.23297 1.08422 0.90458 0.90952 0.91345 0.82690 0.93246 0.88981 0.77452 0.91864 0.88785 0.87647 0.84644 0.84550 0.84297 0.84097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.57 7.60 37.16 0.28 -1.29 16 2 C 0.12 1.24 0.81 -131.28 -0.11 1.13 16 3 N -0.65 -8.97 5.42 -100.89 -0.55 -9.52 16 4 C 0.04 0.68 5.44 -4.97 -0.03 0.65 16 5 C 0.44 9.90 7.82 -10.98 -0.09 9.81 16 6 O -0.58 -15.25 15.78 5.55 0.09 -15.16 16 7 N -0.56 -13.84 5.29 -10.96 -0.06 -13.90 16 8 C -0.30 -8.22 9.68 -14.93 -0.14 -8.36 16 9 H 0.10 2.98 7.16 -52.49 -0.38 2.61 16 10 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 11 N -0.90 -24.12 13.05 55.50 0.72 -23.40 16 12 Si 0.93 20.72 29.55 -169.99 -5.02 15.70 16 13 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 14 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 15 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 16 C -0.11 -0.92 5.76 -26.41 -0.15 -1.07 16 17 C -0.58 -3.79 7.40 37.79 0.28 -3.51 16 18 S 2.38 21.75 6.07 -107.50 -0.65 21.09 16 19 O -0.93 -11.08 17.72 -57.66 -1.02 -12.11 16 20 O -0.94 -12.08 18.16 -57.66 -1.05 -13.13 16 21 C -0.62 -5.57 5.07 37.79 0.19 -5.38 16 22 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 23 H 0.07 0.64 7.70 -51.93 -0.40 0.24 16 24 H 0.07 0.70 6.28 -51.93 -0.33 0.37 16 25 H 0.35 4.94 8.37 -39.30 -0.33 4.61 16 26 H 0.05 0.70 6.87 -51.92 -0.36 0.35 16 27 H 0.09 1.37 6.22 -51.93 -0.32 1.05 16 28 H 0.39 9.22 7.90 -40.82 -0.32 8.89 16 29 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 30 H 0.09 0.66 7.52 -51.93 -0.39 0.26 16 31 H 0.11 0.90 7.76 -51.93 -0.40 0.49 16 32 H 0.14 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.14 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.14 1.20 7.77 -51.93 -0.40 0.79 16 35 H 0.14 1.14 7.79 -51.93 -0.40 0.74 16 LS Contribution 301.54 15.07 4.54 4.54 Total: -1.00 -35.38 301.54 -7.29 -42.68 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: -4.44 Total: 10.72 kcal Atomic # 6 Polarization: -7.65 SS G_CDS: 0.14 Total: -7.51 kcal Atomic # 7 Polarization: -46.94 SS G_CDS: 0.12 Total: -46.82 kcal Atomic # 8 Polarization: -38.41 SS G_CDS: -1.98 Total: -40.40 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Atomic # 16 Polarization: 21.75 SS G_CDS: -0.65 Total: 21.09 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -35.38 -7.29 -42.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044930647.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.545 kcal (2) G-P(sol) polarization free energy of solvation -35.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds