Wall clock time and date at job start Mon Mar 30 2020 04:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46895 * 108.89844 * 2 1 4 4 C 1.46904 * 111.00011 * 59.29613 * 3 2 1 5 5 C 1.50700 * 109.47192 * 180.02562 * 4 3 2 6 6 O 1.21293 * 119.99810 * 0.02562 * 5 4 3 7 7 N 1.34777 * 119.99675 * 180.28082 * 5 4 3 8 8 C 1.37102 * 119.99634 * 179.72687 * 7 5 4 9 9 H 1.08002 * 119.99868 * 359.97438 * 8 7 5 10 10 C 1.38945 * 119.99860 * 179.97438 * 8 7 5 11 11 N 1.31414 * 119.99894 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 119.99956 * 179.97438 * 10 8 7 13 13 H 1.48494 * 109.47230 * 0.02562 * 12 10 8 14 14 H 1.48493 * 109.46892 * 120.00602 * 12 10 8 15 15 H 1.48503 * 109.46797 * 240.00208 * 12 10 8 16 16 C 1.52382 * 108.92393 * 241.33011 * 2 1 3 17 17 C 1.54212 * 112.29566 * 239.39494 * 16 2 1 18 18 S 1.83821 * 102.86282 * 25.04237 * 17 16 2 19 19 O 1.42102 * 109.80882 * 77.68839 * 18 17 16 20 20 O 1.42105 * 109.81236 * 212.03213 * 18 17 16 21 21 C 1.54217 * 108.92657 * 118.67027 * 2 1 3 22 22 H 1.08997 * 109.46779 * 60.69695 * 1 2 3 23 23 H 1.08994 * 109.47519 * 180.70461 * 1 2 3 24 24 H 1.09003 * 109.46771 * 300.69975 * 1 2 3 25 25 H 1.00893 * 111.00470 * 183.25602 * 3 2 1 26 26 H 1.09009 * 109.46542 * 60.00300 * 4 3 2 27 27 H 1.08998 * 109.47050 * 300.00834 * 4 3 2 28 28 H 0.97001 * 120.00485 * 359.71840 * 7 5 4 29 29 H 0.97004 * 119.99542 * 179.97438 * 11 10 8 30 30 H 1.08997 * 108.92435 * 0.13444 * 16 2 1 31 31 H 1.08995 * 108.92966 * 118.78720 * 16 2 1 32 32 H 1.09003 * 110.73493 * 143.38913 * 17 16 2 33 33 H 1.09004 * 110.73524 * 266.51979 * 17 16 2 34 34 H 1.09000 * 110.73476 * 213.90336 * 21 2 1 35 35 H 1.08997 * 110.73279 * 337.21856 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0058 1.3898 0.0000 4 6 1.5138 2.1147 1.1792 5 6 2.0206 3.5334 1.1443 6 8 2.7222 3.9044 0.2271 7 7 1.6984 4.3886 2.1350 8 6 2.1642 5.6778 2.1061 9 1 2.7895 6.0079 1.2898 10 6 1.8316 6.5596 3.1271 11 7 1.0711 6.1577 4.1207 12 14 2.4667 8.3159 3.0882 13 1 3.2962 8.5155 1.8728 14 1 1.3184 9.2570 3.0633 15 1 3.2900 8.5714 4.2974 16 6 2.0242 -0.6916 -1.2647 17 6 2.9011 -1.9215 -0.9544 18 16 2.3256 -2.4230 0.7178 19 8 1.0896 -3.1164 0.6139 20 8 3.4048 -2.9890 1.4489 21 6 2.0302 -0.6999 1.2799 22 1 -0.3633 0.5030 -0.8962 23 1 -0.3634 -1.0275 0.0126 24 1 -0.3633 0.5247 0.8837 25 1 3.0126 1.4273 -0.0535 26 1 1.8719 1.6226 2.0836 27 1 0.4238 2.1183 1.1748 28 1 1.1370 4.0921 2.8683 29 1 0.8393 6.7733 4.8336 30 1 1.1635 -1.0103 -1.8527 31 1 2.6085 0.0180 -1.8504 32 1 2.7216 -2.7161 -1.6787 33 1 3.9563 -1.6487 -0.9367 34 1 2.9557 -0.2445 1.6322 35 1 1.2663 -0.6749 2.0570 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044930647.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:00 Heat of formation + Delta-G solvation = -128.450547 kcal Electronic energy + Delta-G solvation = -19750.153972 eV Core-core repulsion = 16488.462021 eV Total energy + Delta-G solvation = -3261.691951 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 276.098 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.52336 -39.28660 -38.05361 -37.05358 -35.98884 -34.07857 -33.21965 -30.99639 -28.79433 -28.34291 -26.29472 -24.45769 -21.11679 -20.55006 -19.97784 -19.79088 -18.31578 -17.34661 -17.24353 -17.12795 -16.62490 -16.27604 -15.97463 -15.61196 -15.41818 -14.98464 -14.60473 -14.31821 -13.99191 -13.60346 -13.51887 -13.26506 -13.22084 -13.16445 -12.89917 -12.73516 -12.54210 -12.41014 -12.14086 -12.06701 -11.94870 -11.65078 -11.51119 -11.18342 -10.34106 -10.01553 -9.41140 -8.47175 -5.95746 -0.88903 1.36618 1.42356 1.53351 1.56129 2.05610 2.28520 2.61345 2.85001 2.97632 3.20593 3.39861 3.56294 3.70825 3.76007 3.90837 4.04241 4.31131 4.41715 4.47931 4.55503 4.68432 4.76440 4.87973 4.91551 5.00252 5.24734 5.35926 5.41233 5.86600 6.07480 6.37646 6.59574 7.12652 7.56485 8.11282 8.70386 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.039135 B = 0.003685 C = 0.003619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.295188 B = 7596.128566 C = 7735.349196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.121 3.879 3 N -0.657 5.657 4 C 0.056 3.944 5 C 0.437 3.563 6 O -0.623 6.623 7 N -0.575 5.575 8 C -0.333 4.333 9 H 0.079 0.921 10 C -0.012 4.012 11 N -0.921 5.921 12 Si 0.992 3.008 13 H -0.273 1.273 14 H -0.272 1.272 15 H -0.272 1.272 16 C -0.116 4.116 17 C -0.552 4.552 18 S 2.390 3.610 19 O -0.960 6.960 20 O -0.983 6.983 21 C -0.618 4.618 22 H 0.075 0.925 23 H 0.084 0.916 24 H 0.064 0.936 25 H 0.351 0.649 26 H 0.072 0.928 27 H 0.108 0.892 28 H 0.396 0.604 29 H 0.277 0.723 30 H 0.109 0.891 31 H 0.105 0.895 32 H 0.162 0.838 33 H 0.154 0.846 34 H 0.144 0.856 35 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.360 -16.108 -6.912 17.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.029 3.971 3 N -0.290 5.290 4 C -0.076 4.076 5 C 0.225 3.775 6 O -0.509 6.509 7 N -0.212 5.212 8 C -0.462 4.462 9 H 0.097 0.903 10 C -0.212 4.212 11 N -0.562 5.562 12 Si 0.816 3.184 13 H -0.197 1.197 14 H -0.197 1.197 15 H -0.197 1.197 16 C -0.155 4.155 17 C -0.685 4.685 18 S 2.577 3.423 19 O -0.957 6.957 20 O -0.980 6.980 21 C -0.749 4.749 22 H 0.094 0.906 23 H 0.103 0.897 24 H 0.083 0.917 25 H 0.171 0.829 26 H 0.090 0.910 27 H 0.126 0.874 28 H 0.230 0.770 29 H 0.087 0.913 30 H 0.128 0.872 31 H 0.124 0.876 32 H 0.180 0.820 33 H 0.172 0.828 34 H 0.162 0.838 35 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -0.590 -16.465 -7.284 18.014 hybrid contribution 0.605 1.337 1.067 1.814 sum 0.015 -15.128 -6.217 16.356 Atomic orbital electron populations 1.22322 0.91941 1.03764 1.03876 1.21275 0.97410 0.87874 0.90588 1.60379 1.17167 1.11276 1.40170 1.21685 1.02157 0.90013 0.93782 1.20913 0.84514 0.88884 0.83184 1.90494 1.43272 1.79704 1.37436 1.41954 1.46313 1.10506 1.22415 1.19701 1.30146 0.87888 1.08506 0.90265 1.26017 0.96693 1.03880 0.94617 1.69677 1.36911 1.38092 1.11505 0.84885 0.78179 0.77108 0.78269 1.19732 1.19699 1.19681 1.21805 1.01336 0.95437 0.96940 1.30286 1.10741 1.07667 1.19804 1.08960 0.74669 0.78194 0.80501 1.93582 1.44260 1.71175 1.86705 1.93558 1.55778 1.77074 1.71546 1.31278 1.12325 1.23015 1.08325 0.90635 0.89676 0.91713 0.82898 0.90999 0.87429 0.77003 0.91339 0.87217 0.87619 0.82002 0.82769 0.83796 0.83224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.90 7.60 71.98 0.55 -2.35 16 2 C 0.12 2.21 0.81 3.74 0.00 2.21 16 3 N -0.66 -17.25 5.42 -473.11 -2.57 -19.82 16 4 C 0.06 1.72 5.44 85.56 0.47 2.19 16 5 C 0.44 19.80 7.82 87.66 0.69 20.48 16 6 O -0.62 -32.97 15.78 -3.07 -0.05 -33.02 16 7 N -0.57 -28.64 5.29 -306.98 -1.62 -30.27 16 8 C -0.33 -18.56 9.68 84.04 0.81 -17.75 16 9 H 0.08 4.72 7.16 -2.91 -0.02 4.70 16 10 C -0.01 -0.65 5.50 84.92 0.47 -0.18 16 11 N -0.92 -49.04 13.05 21.66 0.28 -48.75 16 12 Si 0.99 42.34 29.55 68.60 2.03 44.37 16 13 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 14 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 15 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 16 C -0.12 -1.54 5.76 30.80 0.18 -1.36 16 17 C -0.55 -5.45 7.40 72.39 0.54 -4.91 16 18 S 2.39 39.71 6.07 -56.49 -0.34 39.37 16 19 O -0.96 -21.47 17.72 -127.53 -2.26 -23.73 16 20 O -0.98 -24.33 18.16 -127.53 -2.32 -26.64 16 21 C -0.62 -10.02 5.07 72.39 0.37 -9.66 16 22 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 23 H 0.08 1.32 7.70 -2.39 -0.02 1.30 16 24 H 0.06 1.20 6.28 -2.39 -0.01 1.18 16 25 H 0.35 9.40 8.37 -89.70 -0.75 8.65 16 26 H 0.07 1.92 6.87 -2.38 -0.02 1.90 16 27 H 0.11 3.03 6.22 -2.39 -0.01 3.02 16 28 H 0.40 18.75 7.90 -92.71 -0.73 18.02 16 29 H 0.28 13.81 8.31 -92.71 -0.77 13.04 16 30 H 0.11 1.16 7.52 -2.39 -0.02 1.14 16 31 H 0.11 1.50 7.76 -2.39 -0.02 1.48 16 32 H 0.16 0.86 8.14 -2.39 -0.02 0.85 16 33 H 0.15 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.14 2.23 7.77 -2.39 -0.02 2.21 16 35 H 0.15 2.15 7.79 -2.39 -0.02 2.13 16 Total: -1.00 -76.51 301.54 -3.14 -79.65 By element: Atomic # 1 Polarization: 30.52 SS G_CDS: -0.35 Total: 30.17 kcal Atomic # 6 Polarization: -15.39 SS G_CDS: 4.06 Total: -11.33 kcal Atomic # 7 Polarization: -94.93 SS G_CDS: -3.91 Total: -98.84 kcal Atomic # 8 Polarization: -78.77 SS G_CDS: -4.63 Total: -83.39 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.37 kcal Atomic # 16 Polarization: 39.71 SS G_CDS: -0.34 Total: 39.37 kcal Total: -76.51 -3.14 -79.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044930647.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.803 kcal (2) G-P(sol) polarization free energy of solvation -76.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds