Wall clock time and date at job start Mon Mar 30 2020 05:03:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86806 * 119.99968 * 2 1 4 4 H 1.48494 * 109.47223 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47006 * 300.00511 * 3 2 1 6 6 H 1.48494 * 109.46652 * 59.99987 * 3 2 1 7 7 C 1.37882 * 120.00454 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00213 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99859 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47470 * 179.97438 * 9 7 2 11 11 O 1.45195 * 109.47371 * 180.02562 * 10 9 7 12 12 C 1.34756 * 117.00091 * 180.02562 * 11 10 9 13 13 O 1.21517 * 120.00061 * 359.97438 * 12 11 10 14 14 C 1.47402 * 120.00060 * 180.02562 * 12 11 10 15 15 C 1.40416 * 120.48012 * 180.02562 * 14 12 11 16 16 C 1.36833 * 118.48766 * 179.97438 * 15 14 12 17 17 C 1.39412 * 119.38539 * 0.25212 * 16 15 14 18 18 N 1.38422 * 119.53461 * 179.74772 * 17 16 15 19 19 C 1.47483 * 111.00153 * 84.02426 * 18 17 16 20 20 C 1.53515 * 87.93102 * 138.70562 * 19 18 17 21 21 C 1.47483 * 111.00370 * 179.97438 * 18 17 16 22 22 N 1.32615 * 120.93115 * 359.49404 * 17 16 15 23 23 C 1.31654 * 121.64558 * 0.49667 * 22 17 16 24 24 H 0.96991 * 120.00236 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47130 * 60.00238 * 9 7 2 26 26 H 1.08998 * 109.47380 * 300.00892 * 9 7 2 27 27 H 1.09002 * 109.46578 * 60.00110 * 10 9 7 28 28 H 1.08996 * 109.47215 * 300.00982 * 10 9 7 29 29 H 1.08005 * 120.75236 * 359.97438 * 15 14 12 30 30 H 1.08002 * 120.30367 * 179.97438 * 16 15 14 31 31 H 1.08994 * 113.47554 * 253.47091 * 19 18 17 32 32 H 1.08999 * 113.47447 * 23.94065 * 19 18 17 33 33 H 1.08996 * 114.17136 * 220.33276 * 20 19 18 34 34 H 1.08998 * 114.17387 * 87.62430 * 20 19 18 35 35 H 1.08998 * 113.47417 * 336.06663 * 21 18 17 36 36 H 1.09000 * 113.47497 * 106.52776 * 21 18 17 37 37 H 1.08000 * 119.75132 * 179.75042 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8902 2.3965 -1.2124 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0018 11 8 1.5194 -4.9195 -0.0024 12 6 2.2534 -6.0496 -0.0031 13 8 3.4669 -5.9860 -0.0035 14 6 1.5843 -7.3630 -0.0043 15 6 2.3392 -8.5470 -0.0044 16 6 1.6760 -9.7439 -0.0050 17 6 0.2819 -9.7535 -0.0108 18 7 -0.3921 -10.9625 -0.0168 19 6 -0.5300 -11.4975 1.3507 20 6 -1.9646 -11.9052 0.9867 21 6 -1.8521 -10.7538 -0.0217 22 7 -0.4076 -8.6207 -0.0057 23 6 0.1906 -7.4479 -0.0047 24 1 -0.4850 0.8399 0.0004 25 1 0.6242 -2.5567 -0.8903 26 1 0.6247 -2.5571 0.8896 27 1 2.8727 -3.6046 0.8878 28 1 2.8714 -3.6038 -0.8921 29 1 3.4187 -8.5136 -0.0040 30 1 2.2275 -10.6725 -0.0055 31 1 0.1242 -12.3454 1.5532 32 1 -0.4794 -10.7310 2.1240 33 1 -2.6921 -11.7339 1.7800 34 1 -2.0461 -12.8919 0.5307 35 1 -2.1541 -9.7889 0.3855 36 1 -2.3185 -10.9712 -0.9825 37 1 -0.4011 -6.5444 -0.0046 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000838086607.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:35 Heat of formation + Delta-G solvation = -7.393703 kcal Electronic energy + Delta-G solvation = -20084.279051 eV Core-core repulsion = 16828.225662 eV Total energy + Delta-G solvation = -3256.053389 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.61948 -40.08726 -38.76020 -36.15680 -33.39616 -32.87835 -32.33423 -30.33076 -28.50076 -26.46981 -25.21775 -23.85001 -23.50259 -21.36903 -20.70997 -20.20580 -18.23126 -17.80217 -16.92616 -16.45679 -16.17191 -15.98082 -15.71389 -14.88663 -14.72168 -14.53585 -13.87953 -13.67529 -13.38673 -13.17072 -12.76894 -12.62606 -12.38635 -12.14946 -11.68848 -11.29187 -11.12957 -11.08533 -10.80811 -10.78339 -10.50158 -10.26716 -10.19495 -9.73735 -9.69512 -9.62507 -9.30983 -8.80522 -8.46815 -6.12646 -4.17013 0.32661 1.01707 2.58881 3.02104 3.26332 3.31480 3.34092 3.39060 3.59981 3.90700 4.20227 4.37284 4.46773 4.63193 4.67204 4.71097 4.94916 5.00911 5.16305 5.18007 5.24204 5.38469 5.42689 5.47920 5.54241 5.71447 5.79999 5.93584 6.05171 6.05622 6.17903 6.59361 6.76248 6.86659 7.51906 7.55623 7.59050 7.83582 8.09460 8.21616 8.88696 9.47622 10.98903 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.036790 B = 0.002921 C = 0.002739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.888240 B = 9583.253631 C =10218.476327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.899 3.101 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.526 4.526 8 H 0.060 0.940 9 C 0.024 3.976 10 C 0.076 3.924 11 O -0.352 6.352 12 C 0.508 3.492 13 O -0.513 6.513 14 C -0.187 4.187 15 C -0.002 4.002 16 C -0.176 4.176 17 C 0.296 3.704 18 N -0.434 5.434 19 C 0.014 3.986 20 C -0.148 4.148 21 C 0.007 3.993 22 N -0.520 5.520 23 C 0.182 3.818 24 H 0.263 0.737 25 H 0.029 0.971 26 H 0.029 0.971 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.151 0.849 30 H 0.145 0.855 31 H 0.093 0.907 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.095 0.905 35 H 0.104 0.896 36 H 0.088 0.912 37 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.346 -23.816 2.190 24.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.142 4.142 3 Si 0.727 3.273 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.564 4.564 8 H 0.078 0.922 9 C -0.013 4.013 10 C 0.004 3.996 11 O -0.268 6.268 12 C 0.351 3.649 13 O -0.404 6.404 14 C -0.191 4.191 15 C -0.027 4.027 16 C -0.197 4.197 17 C 0.065 3.935 18 N -0.154 5.154 19 C -0.112 4.112 20 C -0.186 4.186 21 C -0.121 4.121 22 N -0.232 5.232 23 C 0.024 3.976 24 H 0.073 0.927 25 H 0.047 0.953 26 H 0.047 0.953 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.169 0.831 30 H 0.163 0.837 31 H 0.112 0.888 32 H 0.095 0.905 33 H 0.101 0.899 34 H 0.113 0.887 35 H 0.122 0.878 36 H 0.106 0.894 37 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -2.714 -24.059 1.665 24.268 hybrid contribution 1.287 1.602 0.380 2.090 sum -1.426 -22.456 2.045 22.594 Atomic orbital electron populations 1.69973 1.06091 1.26929 1.49795 1.24983 0.94918 0.99408 0.94844 0.86416 0.80057 0.83138 0.77719 1.19588 1.20815 1.20816 1.21007 0.93226 0.90055 1.52159 0.92179 1.19186 0.94192 0.88962 0.98959 1.23706 0.96451 0.78295 1.01145 1.86566 1.41966 1.15630 1.82630 1.20725 0.85608 0.85230 0.73289 1.90811 1.14932 1.88317 1.46333 1.20266 0.95384 0.92098 1.11351 1.21385 1.01482 0.90166 0.89706 1.21268 0.93390 0.99261 1.05800 1.20711 0.91401 0.90084 0.91296 1.66434 1.09631 1.16373 1.22914 1.23797 0.98147 1.00359 0.88906 1.23175 0.96075 0.99741 0.99605 1.23809 0.87117 0.99977 1.01196 1.67769 1.40406 0.98214 1.16846 1.23189 0.91173 0.95468 0.87798 0.92729 0.95263 0.95268 0.92117 0.92112 0.83133 0.83722 0.88838 0.90511 0.89883 0.88655 0.87753 0.89396 0.80403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.18 13.29 55.43 0.74 -25.45 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 4 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 7 C -0.53 -14.69 9.11 -34.44 -0.31 -15.00 16 8 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 9 C 0.02 0.62 5.35 -27.89 -0.15 0.47 16 10 C 0.08 1.68 5.41 37.16 0.20 1.88 16 11 O -0.35 -6.91 9.49 -40.64 -0.39 -7.30 16 12 C 0.51 9.03 7.89 34.46 0.27 9.30 16 13 O -0.51 -10.17 16.20 -19.28 -0.31 -10.48 16 14 C -0.19 -2.68 5.89 -104.83 -0.62 -3.30 16 15 C 0.00 -0.02 9.65 -39.27 -0.38 -0.40 16 16 C -0.18 -1.86 9.92 -39.65 -0.39 -2.25 16 17 C 0.30 3.41 5.84 -155.30 -0.91 2.51 16 18 N -0.43 -4.25 6.39 -182.89 -1.17 -5.42 16 19 C 0.01 0.10 7.64 -7.59 -0.06 0.05 16 20 C -0.15 -0.90 8.47 -26.22 -0.22 -1.12 16 21 C 0.01 0.06 7.37 -7.61 -0.06 0.00 16 22 N -0.52 -6.65 8.16 -12.13 -0.10 -6.74 16 23 C 0.18 2.45 10.79 -17.11 -0.18 2.26 16 24 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 25 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 28 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 29 H 0.15 1.64 7.73 -52.48 -0.41 1.24 16 30 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 31 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.08 0.59 7.89 -51.93 -0.41 0.18 16 33 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.10 1.02 6.64 -51.93 -0.34 0.67 16 36 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.18 2.29 7.61 -52.49 -0.40 1.89 16 LS Contribution 322.27 15.07 4.86 4.86 Total: -1.00 -31.44 322.27 -9.20 -40.64 By element: Atomic # 1 Polarization: 2.49 SS G_CDS: -4.91 Total: -2.42 kcal Atomic # 6 Polarization: -1.08 SS G_CDS: -2.90 Total: -3.98 kcal Atomic # 7 Polarization: -37.08 SS G_CDS: -0.53 Total: -37.61 kcal Atomic # 8 Polarization: -17.08 SS G_CDS: -0.70 Total: -17.78 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.44 -9.20 -40.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838086607.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.247 kcal (2) G-P(sol) polarization free energy of solvation -31.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds