Wall clock time and date at job start Mon Mar 30 2020 05:39:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.71381 * 2 1 4 4 C 1.53372 * 109.71373 * 239.39821 * 2 1 3 5 5 C 1.52662 * 108.24915 * 171.05996 * 4 2 1 6 6 C 1.50828 * 110.74640 * 51.07589 * 5 4 2 7 7 N 1.36381 * 116.91546 * 162.26611 * 6 5 4 8 8 H 0.97001 * 119.01527 * 358.94824 * 7 6 5 9 9 C 1.34220 * 121.96838 * 178.91994 * 7 6 5 10 10 O 1.21888 * 120.24395 * 180.23447 * 9 7 6 11 11 C 1.41979 * 119.51285 * 0.25170 * 9 7 6 12 12 C 1.46966 * 120.77474 * 180.17512 * 11 9 7 13 13 O 1.21690 * 119.99919 * 174.18331 * 12 11 9 14 14 N 1.34781 * 120.00199 * 354.18964 * 12 11 9 15 15 C 1.36881 * 119.99797 * 185.12927 * 14 12 11 16 16 H 1.08004 * 120.00234 * 359.97438 * 15 14 12 17 17 C 1.39025 * 120.00044 * 179.97438 * 15 14 12 18 18 N 1.31389 * 119.99575 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00019 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46965 * 90.00315 * 19 17 15 21 21 H 1.48506 * 109.47053 * 210.00113 * 19 17 15 22 22 H 1.48500 * 109.47454 * 329.99902 * 19 17 15 23 23 C 1.39062 * 118.44837 * 0.16060 * 11 9 7 24 24 C 1.35314 * 122.58366 * 341.86712 * 6 5 4 25 25 C 1.50680 * 122.92858 * 1.08069 * 24 6 5 26 26 H 1.08998 * 109.46944 * 180.60573 * 1 2 3 27 27 H 1.09002 * 109.47068 * 300.60238 * 1 2 3 28 28 H 1.08993 * 109.47984 * 60.60100 * 1 2 3 29 29 H 1.08996 * 109.70560 * 290.75070 * 4 2 1 30 30 H 1.09003 * 109.70731 * 51.37531 * 4 2 1 31 31 H 1.09003 * 109.22181 * 171.41183 * 5 4 2 32 32 H 1.09005 * 109.22690 * 290.75948 * 5 4 2 33 33 H 0.96998 * 120.00090 * 5.12355 * 14 12 11 34 34 H 0.97000 * 119.99789 * 179.97438 * 18 17 15 35 35 H 1.07997 * 120.15729 * 179.83125 * 23 11 9 36 36 H 1.08997 * 109.22376 * 221.79952 * 25 24 6 37 37 H 1.08993 * 109.22092 * 102.44679 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8977 1.0261 0.0000 4 6 2.0474 -0.7350 -1.2427 5 6 3.5569 -0.5242 -1.3290 6 6 4.2199 -0.8667 -0.0182 7 7 5.5656 -1.0864 -0.0459 8 1 6.0341 -1.0308 -0.8935 9 6 6.2613 -1.3769 1.0646 10 8 7.4643 -1.5633 1.0043 11 6 5.5854 -1.4656 2.3100 12 6 6.3203 -1.7781 3.5438 13 8 5.7482 -1.7468 4.6173 14 7 7.6281 -2.0993 3.4863 15 6 8.2868 -2.4921 4.6200 16 1 7.7588 -2.5443 5.5608 17 6 9.6356 -2.8238 4.5607 18 7 10.2780 -2.7598 3.4164 19 14 10.5347 -3.3592 6.1080 20 1 10.4336 -4.8336 6.2541 21 1 11.9640 -2.9683 6.0103 22 1 9.9214 -2.7014 7.2897 23 6 4.2119 -1.2497 2.3353 24 6 3.5343 -0.9498 1.1454 25 6 2.0461 -0.7322 1.2365 26 1 -0.3633 -1.0276 0.0109 27 1 -0.3633 0.5232 0.8846 28 1 -0.3635 0.5044 -0.8952 29 1 1.8291 -1.7995 -1.1576 30 1 1.5683 -0.3311 -2.1347 31 1 3.9639 -1.1612 -2.1144 32 1 3.7604 0.5187 -1.5722 33 1 8.1024 -2.0521 2.6415 34 1 11.2192 -2.9909 3.3750 35 1 3.6697 -1.3131 3.2672 36 1 1.8238 -0.1392 2.1237 37 1 1.5465 -1.6976 1.3166 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072446292.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:45 Heat of formation + Delta-G solvation = -61.757068 kcal Electronic energy + Delta-G solvation = -21149.817762 eV Core-core repulsion = 17891.407001 eV Total energy + Delta-G solvation = -3258.410762 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.17458 -38.61651 -37.49392 -35.79921 -34.03138 -33.42508 -31.33266 -31.10496 -29.85044 -26.31227 -25.49841 -23.71299 -23.36958 -22.13634 -20.37575 -19.34732 -17.92109 -17.43210 -16.95296 -16.12041 -15.50205 -15.26748 -14.69601 -14.58682 -14.34560 -14.10162 -13.74982 -13.57349 -13.05257 -12.99655 -12.83526 -12.55421 -12.25043 -12.20930 -11.88561 -11.51440 -11.07892 -11.00881 -10.95162 -10.82428 -10.62892 -10.39018 -10.24462 -9.71119 -9.41081 -9.39306 -8.33945 -7.88496 -7.53360 -6.40817 -3.67847 0.87930 2.12899 3.10292 3.20127 3.27544 3.34817 3.61206 4.18586 4.24336 4.47623 4.51198 4.56091 4.74427 4.86488 5.07449 5.10863 5.16517 5.27631 5.42493 5.46346 5.48233 5.50405 5.57067 5.64592 5.66511 5.76543 5.92615 6.01211 6.15353 6.20328 6.37199 6.48984 6.87256 6.95985 7.23506 7.53157 8.12759 8.39960 8.76049 9.21116 9.73590 10.29261 10.74181 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.039751 B = 0.004111 C = 0.003756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.222343 B = 6809.504254 C = 7452.177786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.096 4.096 3 H 0.075 0.925 4 C -0.109 4.109 5 C -0.086 4.086 6 C 0.144 3.856 7 N -0.608 5.608 8 H 0.408 0.592 9 C 0.521 3.479 10 O -0.530 6.530 11 C -0.210 4.210 12 C 0.468 3.532 13 O -0.615 6.615 14 N -0.528 5.528 15 C -0.289 4.289 16 H 0.106 0.894 17 C 0.020 3.980 18 N -0.871 5.871 19 Si 0.935 3.065 20 H -0.276 1.276 21 H -0.282 1.282 22 H -0.266 1.266 23 C -0.001 4.001 24 C -0.173 4.173 25 C -0.055 4.055 26 H 0.056 0.944 27 H 0.057 0.943 28 H 0.054 0.946 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.414 0.586 34 H 0.275 0.725 35 H 0.142 0.858 36 H 0.076 0.924 37 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.006 5.121 -13.103 22.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.114 4.114 3 H 0.094 0.906 4 C -0.147 4.147 5 C -0.124 4.124 6 C 0.036 3.964 7 N -0.241 5.241 8 H 0.245 0.755 9 C 0.320 3.680 10 O -0.410 6.410 11 C -0.218 4.218 12 C 0.256 3.744 13 O -0.505 6.505 14 N -0.168 5.168 15 C -0.420 4.420 16 H 0.124 0.876 17 C -0.184 4.184 18 N -0.509 5.509 19 Si 0.761 3.239 20 H -0.201 1.201 21 H -0.207 1.207 22 H -0.191 1.191 23 C -0.025 4.025 24 C -0.178 4.178 25 C -0.093 4.093 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.101 0.899 32 H 0.106 0.894 33 H 0.258 0.742 34 H 0.085 0.915 35 H 0.159 0.841 36 H 0.095 0.905 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -16.348 4.932 -12.343 21.070 hybrid contribution 1.027 -0.222 -0.177 1.066 sum -15.320 4.710 -12.520 20.339 Atomic orbital electron populations 1.21804 0.94726 1.02008 1.01798 1.21196 0.95692 0.99830 0.94700 0.90622 1.21579 0.93169 1.01573 0.98394 1.20665 0.96417 1.02817 0.92509 1.20080 0.82857 0.97176 0.96307 1.43495 1.07617 1.60457 1.12487 0.75504 1.17277 0.87530 0.78955 0.84206 1.90818 1.13216 1.52256 1.84748 1.21442 0.95212 1.11028 0.94085 1.16965 0.83256 0.87201 0.86948 1.90588 1.69026 1.61844 1.29043 1.42646 1.07957 1.52992 1.13248 1.19961 0.92526 1.39323 0.90162 0.87574 1.25506 0.96864 0.97425 0.98649 1.69727 1.10970 1.45262 1.24967 0.85786 0.78182 0.78950 0.80969 1.20142 1.20700 1.19079 1.21753 0.92930 0.90023 0.97808 1.18777 0.96597 1.11119 0.91326 1.20287 0.89823 1.00877 0.98308 0.92498 0.92424 0.92663 0.91003 0.90814 0.89912 0.89378 0.74159 0.91529 0.84066 0.90518 0.90718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.20 37.16 0.34 -0.52 16 2 C -0.10 -0.69 2.76 -90.58 -0.25 -0.94 16 3 H 0.08 0.56 8.10 -51.93 -0.42 0.14 16 4 C -0.11 -0.70 5.30 -26.71 -0.14 -0.84 16 5 C -0.09 -0.64 5.74 -27.99 -0.16 -0.80 16 6 C 0.14 1.73 6.65 -81.55 -0.54 1.19 16 7 N -0.61 -8.82 5.19 -10.83 -0.06 -8.87 16 8 H 0.41 4.74 8.64 -40.82 -0.35 4.39 16 9 C 0.52 10.78 7.73 -15.08 -0.12 10.66 16 10 O -0.53 -13.07 14.60 5.02 0.07 -13.00 16 11 C -0.21 -4.69 5.91 -104.63 -0.62 -5.30 16 12 C 0.47 13.06 7.68 -12.72 -0.10 12.97 16 13 O -0.62 -18.43 15.99 5.20 0.08 -18.34 16 14 N -0.53 -15.79 5.19 -12.08 -0.06 -15.85 16 15 C -0.29 -8.82 9.68 -15.01 -0.15 -8.96 16 16 H 0.11 3.28 7.16 -52.48 -0.38 2.90 16 17 C 0.02 0.58 5.50 -17.45 -0.10 0.49 16 18 N -0.87 -25.78 13.05 55.50 0.72 -25.06 16 19 Si 0.94 21.82 29.55 -169.99 -5.02 16.80 16 20 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 21 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 22 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 23 C 0.00 -0.01 9.24 -38.55 -0.36 -0.37 16 24 C -0.17 -2.29 5.71 -104.95 -0.60 -2.89 16 25 C -0.06 -0.53 4.97 -28.05 -0.14 -0.67 16 26 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.07 0.48 8.10 -51.93 -0.42 0.06 16 30 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.41 12.47 4.53 -40.82 -0.18 12.29 16 34 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 35 H 0.14 2.49 7.69 -52.49 -0.40 2.09 16 36 H 0.08 0.72 8.12 -51.93 -0.42 0.30 16 37 H 0.07 0.67 8.11 -51.93 -0.42 0.25 16 LS Contribution 308.57 15.07 4.65 4.65 Total: -1.00 -36.65 308.57 -7.21 -43.86 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: -4.67 Total: 11.82 kcal Atomic # 6 Polarization: 6.92 SS G_CDS: -2.92 Total: 3.99 kcal Atomic # 7 Polarization: -50.39 SS G_CDS: 0.61 Total: -49.78 kcal Atomic # 8 Polarization: -31.49 SS G_CDS: 0.16 Total: -31.34 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -36.65 -7.21 -43.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072446292.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.898 kcal (2) G-P(sol) polarization free energy of solvation -36.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds