Wall clock time and date at job start Mon Mar 30 2020 05:39:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.71381 * 2 1 4 4 C 1.53372 * 109.71373 * 239.39821 * 2 1 3 5 5 C 1.52662 * 108.24915 * 171.05996 * 4 2 1 6 6 C 1.50828 * 110.74640 * 51.07589 * 5 4 2 7 7 N 1.36381 * 116.91546 * 162.26611 * 6 5 4 8 8 H 0.97001 * 119.01527 * 358.94824 * 7 6 5 9 9 C 1.34220 * 121.96838 * 178.91994 * 7 6 5 10 10 O 1.21888 * 120.24395 * 180.23447 * 9 7 6 11 11 C 1.41979 * 119.51285 * 0.25170 * 9 7 6 12 12 C 1.46966 * 120.77474 * 180.17512 * 11 9 7 13 13 O 1.21690 * 119.99919 * 174.18331 * 12 11 9 14 14 N 1.34781 * 120.00199 * 354.18964 * 12 11 9 15 15 C 1.36881 * 119.99797 * 185.12927 * 14 12 11 16 16 H 1.08004 * 120.00234 * 359.97438 * 15 14 12 17 17 C 1.39025 * 120.00044 * 179.97438 * 15 14 12 18 18 N 1.31389 * 119.99575 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00019 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46965 * 90.00315 * 19 17 15 21 21 H 1.48506 * 109.47053 * 210.00113 * 19 17 15 22 22 H 1.48500 * 109.47454 * 329.99902 * 19 17 15 23 23 C 1.39062 * 118.44837 * 0.16060 * 11 9 7 24 24 C 1.35314 * 122.58366 * 341.86712 * 6 5 4 25 25 C 1.50680 * 122.92858 * 1.08069 * 24 6 5 26 26 H 1.08998 * 109.46944 * 180.60573 * 1 2 3 27 27 H 1.09002 * 109.47068 * 300.60238 * 1 2 3 28 28 H 1.08993 * 109.47984 * 60.60100 * 1 2 3 29 29 H 1.08996 * 109.70560 * 290.75070 * 4 2 1 30 30 H 1.09003 * 109.70731 * 51.37531 * 4 2 1 31 31 H 1.09003 * 109.22181 * 171.41183 * 5 4 2 32 32 H 1.09005 * 109.22690 * 290.75948 * 5 4 2 33 33 H 0.96998 * 120.00090 * 5.12355 * 14 12 11 34 34 H 0.97000 * 119.99789 * 179.97438 * 18 17 15 35 35 H 1.07997 * 120.15729 * 179.83125 * 23 11 9 36 36 H 1.08997 * 109.22376 * 221.79952 * 25 24 6 37 37 H 1.08993 * 109.22092 * 102.44679 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8977 1.0261 0.0000 4 6 2.0474 -0.7350 -1.2427 5 6 3.5569 -0.5242 -1.3290 6 6 4.2199 -0.8667 -0.0182 7 7 5.5656 -1.0864 -0.0459 8 1 6.0341 -1.0308 -0.8935 9 6 6.2613 -1.3769 1.0646 10 8 7.4643 -1.5633 1.0043 11 6 5.5854 -1.4656 2.3100 12 6 6.3203 -1.7781 3.5438 13 8 5.7482 -1.7468 4.6173 14 7 7.6281 -2.0993 3.4863 15 6 8.2868 -2.4921 4.6200 16 1 7.7588 -2.5443 5.5608 17 6 9.6356 -2.8238 4.5607 18 7 10.2780 -2.7598 3.4164 19 14 10.5347 -3.3592 6.1080 20 1 10.4336 -4.8336 6.2541 21 1 11.9640 -2.9683 6.0103 22 1 9.9214 -2.7014 7.2897 23 6 4.2119 -1.2497 2.3353 24 6 3.5343 -0.9498 1.1454 25 6 2.0461 -0.7322 1.2365 26 1 -0.3633 -1.0276 0.0109 27 1 -0.3633 0.5232 0.8846 28 1 -0.3635 0.5044 -0.8952 29 1 1.8291 -1.7995 -1.1576 30 1 1.5683 -0.3311 -2.1347 31 1 3.9639 -1.1612 -2.1144 32 1 3.7604 0.5187 -1.5722 33 1 8.1024 -2.0521 2.6415 34 1 11.2192 -2.9909 3.3750 35 1 3.6697 -1.3131 3.2672 36 1 1.8238 -0.1392 2.1237 37 1 1.5465 -1.6976 1.3166 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072446292.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:45 Heat of formation + Delta-G solvation = -89.778129 kcal Electronic energy + Delta-G solvation = -21151.032846 eV Core-core repulsion = 17891.407001 eV Total energy + Delta-G solvation = -3259.625846 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.58628 -40.06957 -39.28295 -37.01637 -36.00668 -34.95226 -33.28237 -32.13895 -31.10222 -27.42840 -27.09839 -25.15625 -24.62702 -23.25114 -21.75435 -20.59840 -19.88367 -18.97373 -18.48794 -17.36672 -17.18718 -16.74917 -16.62339 -15.78488 -15.54552 -15.34280 -15.18991 -14.87813 -14.68766 -14.24775 -13.96261 -13.71495 -13.55068 -13.41222 -12.97661 -12.91405 -12.65301 -12.47377 -12.12399 -11.99652 -11.66107 -11.60437 -11.45229 -11.27844 -11.10504 -11.01144 -10.53252 -10.07712 -8.95917 -8.51857 -5.98684 -0.52467 0.72368 1.35431 1.36435 1.53083 1.76379 1.90556 2.26962 2.67458 3.21302 3.29246 3.40261 3.55013 3.82736 3.90358 3.99093 4.19627 4.31156 4.38159 4.57993 4.60765 4.72332 4.86639 4.92633 5.00538 5.07764 5.09018 5.16413 5.21517 5.30163 5.33664 5.40030 5.51941 5.65293 5.73901 5.82061 5.94890 6.56605 6.89619 7.02863 7.59501 8.12296 8.65493 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.039751 B = 0.004111 C = 0.003756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.222343 B = 6809.504254 C = 7452.177786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.093 4.093 3 H 0.079 0.921 4 C -0.107 4.107 5 C -0.089 4.089 6 C 0.197 3.803 7 N -0.587 5.587 8 H 0.428 0.572 9 C 0.519 3.481 10 O -0.582 6.582 11 C -0.288 4.288 12 C 0.470 3.530 13 O -0.649 6.649 14 N -0.556 5.556 15 C -0.345 4.345 16 H 0.085 0.915 17 C -0.022 4.022 18 N -0.913 5.913 19 Si 1.011 2.989 20 H -0.263 1.263 21 H -0.265 1.265 22 H -0.266 1.266 23 C 0.053 3.947 24 C -0.195 4.195 25 C -0.054 4.054 26 H 0.058 0.942 27 H 0.053 0.947 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.104 0.896 31 H 0.113 0.887 32 H 0.119 0.881 33 H 0.409 0.591 34 H 0.280 0.720 35 H 0.139 0.861 36 H 0.076 0.924 37 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.065 6.065 -16.226 26.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.111 4.111 3 H 0.097 0.903 4 C -0.145 4.145 5 C -0.126 4.126 6 C 0.086 3.914 7 N -0.218 5.218 8 H 0.269 0.731 9 C 0.320 3.680 10 O -0.467 6.467 11 C -0.295 4.295 12 C 0.260 3.740 13 O -0.541 6.541 14 N -0.198 5.198 15 C -0.475 4.475 16 H 0.103 0.897 17 C -0.222 4.222 18 N -0.552 5.552 19 Si 0.831 3.169 20 H -0.188 1.188 21 H -0.190 1.190 22 H -0.190 1.190 23 C 0.029 3.971 24 C -0.199 4.199 25 C -0.092 4.092 26 H 0.077 0.923 27 H 0.072 0.928 28 H 0.088 0.912 29 H 0.091 0.909 30 H 0.122 0.878 31 H 0.131 0.869 32 H 0.136 0.864 33 H 0.254 0.746 34 H 0.090 0.910 35 H 0.157 0.843 36 H 0.095 0.905 37 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -19.461 5.895 -15.536 25.590 hybrid contribution 1.441 -0.343 0.476 1.556 sum -18.020 5.551 -15.060 24.132 Atomic orbital electron populations 1.21778 0.93561 1.02357 1.02420 1.21201 0.96622 0.99664 0.93635 0.90251 1.21648 0.91963 1.01800 0.99086 1.21032 0.96974 1.05094 0.89478 1.21199 0.81338 0.90336 0.98508 1.43362 1.08620 1.57989 1.11799 0.73147 1.16989 0.86895 0.79066 0.85063 1.90777 1.15327 1.55137 1.85469 1.20936 0.96629 1.18915 0.93053 1.17876 0.82941 0.84660 0.88544 1.90510 1.69721 1.62677 1.31195 1.42727 1.08770 1.55390 1.12895 1.19975 0.93960 1.43493 0.90037 0.89675 1.26509 0.96784 0.96484 1.02405 1.69830 1.11473 1.46811 1.27080 0.84710 0.77087 0.78868 0.76199 1.18841 1.18951 1.19046 1.22120 0.91139 0.84056 0.99776 1.19188 0.98783 1.12063 0.89866 1.20393 0.86682 1.01961 1.00150 0.92291 0.92765 0.91234 0.90924 0.87797 0.86926 0.86352 0.74624 0.91013 0.84335 0.90495 0.89824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.02 9.20 71.98 0.66 -0.35 16 2 C -0.09 -0.84 2.76 -10.77 -0.03 -0.87 16 3 H 0.08 0.72 8.10 -2.39 -0.02 0.70 16 4 C -0.11 -0.66 5.30 30.61 0.16 -0.50 16 5 C -0.09 -0.70 5.74 29.78 0.17 -0.53 16 6 C 0.20 3.85 6.65 41.22 0.27 4.12 16 7 N -0.59 -15.57 5.19 -306.63 -1.59 -17.16 16 8 H 0.43 8.51 8.64 -92.71 -0.80 7.71 16 9 C 0.52 21.92 7.73 85.26 0.66 22.58 16 10 O -0.58 -30.32 14.60 -4.95 -0.07 -30.40 16 11 C -0.29 -13.39 5.91 -19.87 -0.12 -13.50 16 12 C 0.47 28.20 7.68 86.53 0.66 28.87 16 13 O -0.65 -41.59 15.99 -4.32 -0.07 -41.66 16 14 N -0.56 -36.03 5.19 -310.36 -1.61 -37.64 16 15 C -0.34 -22.75 9.68 84.09 0.81 -21.94 16 16 H 0.09 5.74 7.16 -2.91 -0.02 5.72 16 17 C -0.02 -1.30 5.50 84.95 0.47 -0.84 16 18 N -0.91 -57.07 13.05 21.68 0.28 -56.79 16 19 Si 1.01 46.92 29.55 68.60 2.03 48.95 16 20 H -0.26 -11.60 7.11 99.48 0.71 -10.90 16 21 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 22 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 23 C 0.05 1.88 9.24 22.94 0.21 2.09 16 24 C -0.19 -4.54 5.71 -20.08 -0.11 -4.65 16 25 C -0.05 -0.83 4.97 29.74 0.15 -0.68 16 26 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 27 H 0.05 0.43 8.14 -2.39 -0.02 0.42 16 28 H 0.07 0.33 8.14 -2.39 -0.02 0.31 16 29 H 0.07 0.51 8.10 -2.39 -0.02 0.49 16 30 H 0.10 0.19 8.14 -2.39 -0.02 0.17 16 31 H 0.11 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.12 0.55 8.14 -2.38 -0.02 0.53 16 33 H 0.41 26.76 4.53 -92.71 -0.42 26.34 16 34 H 0.28 16.00 8.31 -92.71 -0.77 15.23 16 35 H 0.14 4.91 7.69 -2.91 -0.02 4.89 16 36 H 0.08 1.21 8.12 -2.39 -0.02 1.19 16 37 H 0.08 1.18 8.11 -2.39 -0.02 1.16 16 Total: -1.00 -91.13 308.57 2.83 -88.30 By element: Atomic # 1 Polarization: 32.72 SS G_CDS: -0.11 Total: 32.61 kcal Atomic # 6 Polarization: 9.81 SS G_CDS: 3.97 Total: 13.78 kcal Atomic # 7 Polarization: -108.67 SS G_CDS: -2.92 Total: -111.59 kcal Atomic # 8 Polarization: -71.91 SS G_CDS: -0.14 Total: -72.05 kcal Atomic # 14 Polarization: 46.92 SS G_CDS: 2.03 Total: 48.95 kcal Total: -91.13 2.83 -88.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072446292.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.482 kcal (2) G-P(sol) polarization free energy of solvation -91.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds