Wall clock time and date at job start Mon Mar 30 2020 05:41:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46905 * 110.99721 * 2 1 4 4 C 1.53000 * 109.46946 * 66.04861 * 3 2 1 5 5 O 1.42893 * 109.47356 * 64.99958 * 4 3 2 6 6 C 1.35967 * 117.00301 * 180.02562 * 5 4 3 7 7 C 1.39421 * 119.81937 * 0.24698 * 6 5 4 8 8 C 1.38085 * 120.56769 * 180.30351 * 7 6 5 9 9 C 1.38722 * 120.20564 * 359.44656 * 8 7 6 10 10 N 1.38849 * 120.18192 * 180.25285 * 9 8 7 11 11 C 1.41542 * 119.63427 * 0.27612 * 9 8 7 12 12 C 1.41021 * 120.27766 * 180.02562 * 11 9 8 13 13 H 1.08003 * 120.00065 * 333.63648 * 12 11 9 14 14 C 1.39904 * 120.00241 * 153.63616 * 12 11 9 15 15 N 1.30893 * 119.99580 * 343.99885 * 14 12 11 16 16 Si 1.86801 * 120.00135 * 163.99982 * 14 12 11 17 17 H 1.48510 * 109.46918 * 89.99964 * 16 14 12 18 18 H 1.48494 * 109.47096 * 209.99702 * 16 14 12 19 19 H 1.48498 * 109.46930 * 330.00117 * 16 14 12 20 20 C 1.37841 * 119.82237 * 179.97438 * 6 5 4 21 21 C 1.46899 * 110.99815 * 236.04873 * 2 1 3 22 22 C 1.52993 * 117.50331 * 7.70100 * 21 2 1 23 23 C 1.52993 * 117.50074 * 299.03746 * 21 2 1 24 24 H 1.09002 * 109.47109 * 60.00063 * 1 2 3 25 25 H 1.09001 * 109.46849 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47222 * 300.00072 * 1 2 3 27 27 H 1.08997 * 109.46995 * 306.04727 * 3 2 1 28 28 H 1.08994 * 109.47081 * 186.04641 * 3 2 1 29 29 H 1.09000 * 109.47135 * 304.99417 * 4 3 2 30 30 H 1.09001 * 109.47108 * 185.00338 * 4 3 2 31 31 H 1.08000 * 119.71235 * 0.04959 * 7 6 5 32 32 H 1.08005 * 119.89910 * 179.72207 * 8 7 6 33 33 H 0.96996 * 120.00567 * 0.02562 * 10 9 8 34 34 H 0.97003 * 119.99956 * 179.97438 * 10 9 8 35 35 H 0.97008 * 119.99803 * 180.02562 * 15 14 12 36 36 H 1.08001 * 120.10775 * 359.97438 * 20 6 5 37 37 H 1.09006 * 115.54404 * 153.37087 * 21 2 1 38 38 H 1.09009 * 117.49496 * 359.97438 * 22 21 2 39 39 H 1.08995 * 117.50295 * 145.01566 * 22 21 2 40 40 H 1.09000 * 117.49974 * 214.98338 * 23 21 2 41 41 H 1.09003 * 117.49439 * 359.97438 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6314 2.0574 1.3183 5 8 2.2955 1.3976 2.3978 6 6 2.0773 1.8861 3.6478 7 6 1.2319 2.9803 3.8267 8 6 1.0042 3.4928 5.0886 9 6 1.6075 2.9148 6.1960 10 7 1.3741 3.4274 7.4651 11 6 2.4628 1.8001 6.0249 12 6 3.0827 1.2016 7.1413 13 1 3.2734 1.7847 8.0302 14 6 3.4508 -0.1475 7.0974 15 7 2.9551 -0.9313 6.1737 16 14 4.6496 -0.8300 8.3569 17 1 3.8975 -1.3302 9.5358 18 1 5.4211 -1.9455 7.7523 19 1 5.5829 0.2431 8.7842 20 6 2.6885 1.2933 4.7318 21 6 1.9954 -0.7659 -1.1376 22 6 0.9931 -1.2526 -2.1861 23 6 1.6336 -2.2503 -1.2179 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.5610 1.9274 -0.8309 28 1 3.0796 1.3445 -0.1082 29 1 0.5531 2.0058 1.4691 30 1 1.9437 3.1012 1.2831 31 1 0.7544 3.4334 2.9706 32 1 0.3509 4.3436 5.2142 33 1 0.7875 4.1913 7.5794 34 1 1.7970 3.0209 8.2377 35 1 3.2100 -1.8668 6.1434 36 1 3.3387 0.4429 4.5891 37 1 2.9846 -0.4694 -1.4865 38 1 -0.0571 -1.0048 -2.0315 39 1 1.3229 -1.2766 -3.2247 40 1 2.3846 -2.9303 -1.6199 41 1 1.0053 -2.6586 -0.4263 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234264876.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:41 Heat of formation + Delta-G solvation = 21.216714 kcal Electronic energy + Delta-G solvation = -21139.735604 eV Core-core repulsion = 18020.755951 eV Total energy + Delta-G solvation = -3118.979654 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.11230 -38.32835 -36.67269 -34.11539 -33.49470 -32.18543 -29.56723 -29.03331 -26.86841 -26.05654 -24.94147 -22.50705 -22.11010 -20.87778 -20.15589 -19.72152 -17.57885 -16.91817 -16.10763 -15.80862 -15.42028 -15.16658 -14.82385 -14.66407 -14.23107 -13.76716 -13.36699 -12.98553 -12.49282 -12.40258 -12.17124 -11.87863 -11.78920 -11.60764 -11.39094 -11.36388 -11.08457 -11.04955 -10.91988 -10.71441 -10.44774 -10.27285 -10.21196 -9.90550 -9.28781 -9.05008 -8.49094 -8.00282 -7.31153 -6.62559 -5.89999 -4.10214 2.87661 3.15282 3.18367 3.26075 3.35099 3.67344 4.01171 4.03773 4.28953 4.77429 4.82379 4.91896 5.00479 5.21194 5.33041 5.35194 5.43502 5.54367 5.58403 5.68596 5.75988 5.80057 5.82857 5.93375 6.05277 6.08972 6.15060 6.27575 6.46677 6.97997 7.09494 7.12467 7.16467 7.29099 7.60280 7.66195 7.75884 8.07087 8.16407 8.41845 8.79843 8.91051 8.98137 9.19322 9.25781 10.36800 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.017477 B = 0.004593 C = 0.003797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.759220 B = 6094.551206 C = 7372.537280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.497 5.497 3 C 0.060 3.940 4 C 0.070 3.930 5 O -0.309 6.309 6 C 0.095 3.905 7 C -0.277 4.277 8 C -0.156 4.156 9 C 0.094 3.906 10 N -0.887 5.887 11 C 0.093 3.907 12 C -0.464 4.464 13 H 0.074 0.926 14 C 0.076 3.924 15 N -0.791 5.791 16 Si 0.903 3.097 17 H -0.272 1.272 18 H -0.277 1.277 19 H -0.263 1.263 20 C -0.168 4.168 21 C 0.026 3.974 22 C -0.225 4.225 23 C -0.171 4.171 24 H 0.026 0.974 25 H 0.068 0.932 26 H 0.075 0.925 27 H 0.048 0.952 28 H 0.084 0.916 29 H 0.051 0.949 30 H 0.054 0.946 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.375 0.625 34 H 0.390 0.610 35 H 0.278 0.722 36 H 0.126 0.874 37 H 0.116 0.884 38 H 0.098 0.902 39 H 0.090 0.910 40 H 0.095 0.905 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.745 1.178 -11.164 11.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.219 5.219 3 C -0.067 4.067 4 C -0.006 4.006 5 O -0.224 6.224 6 C 0.050 3.950 7 C -0.298 4.298 8 C -0.180 4.180 9 C -0.007 4.007 10 N -0.429 5.429 11 C 0.089 3.911 12 C -0.495 4.495 13 H 0.092 0.908 14 C -0.141 4.141 15 N -0.417 5.417 16 Si 0.728 3.272 17 H -0.198 1.198 18 H -0.202 1.202 19 H -0.187 1.187 20 C -0.189 4.189 21 C -0.084 4.084 22 C -0.264 4.264 23 C -0.208 4.208 24 H 0.045 0.955 25 H 0.087 0.913 26 H 0.093 0.907 27 H 0.066 0.934 28 H 0.102 0.898 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.108 0.892 32 H 0.105 0.895 33 H 0.200 0.800 34 H 0.218 0.782 35 H 0.089 0.911 36 H 0.143 0.857 37 H 0.134 0.866 38 H 0.116 0.884 39 H 0.108 0.892 40 H 0.114 0.886 41 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -2.436 0.509 -10.921 11.201 hybrid contribution -0.150 0.284 0.087 0.333 sum -2.586 0.793 -10.834 11.167 Atomic orbital electron populations 1.22550 0.87529 1.02137 1.00720 1.61732 1.07595 1.13378 1.39178 1.22199 1.01214 0.88004 0.95308 1.22481 0.96827 0.95078 0.86255 1.86097 1.67499 1.55662 1.13118 1.18774 0.98356 0.94582 0.83266 1.20131 1.10142 1.03158 0.96362 1.19692 1.04785 1.01633 0.91855 1.17903 0.99661 0.98396 0.84721 1.41824 1.57331 1.37703 1.06051 1.16967 0.91164 0.90407 0.92596 1.19111 1.35528 0.94640 1.00198 0.90845 1.25796 0.95098 0.97072 0.96166 1.69868 1.34873 1.06101 1.30825 0.86408 0.80991 0.79034 0.80776 1.19791 1.20206 1.18698 1.20302 1.05701 1.04244 0.88647 1.22667 0.98114 0.95721 0.91896 1.23577 0.99846 1.06714 0.96248 1.23040 1.03633 0.92514 1.01659 0.95508 0.91327 0.90651 0.93429 0.89768 0.93071 0.92820 0.89235 0.89544 0.79970 0.78160 0.91058 0.85654 0.86594 0.88392 0.89169 0.88649 0.88431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 7.96 60.07 0.48 0.72 16 2 N -0.50 -7.37 4.92 -234.89 -1.16 -8.52 16 3 C 0.06 0.85 5.32 -3.82 -0.02 0.83 16 4 C 0.07 1.20 4.79 37.16 0.18 1.38 16 5 O -0.31 -7.02 10.08 -19.64 -0.20 -7.22 16 6 C 0.09 2.38 6.67 -39.29 -0.26 2.11 16 7 C -0.28 -6.43 9.03 -39.20 -0.35 -6.79 16 8 C -0.16 -3.61 9.87 -39.46 -0.39 -3.99 16 9 C 0.09 2.29 6.79 -83.25 -0.57 1.73 16 10 N -0.89 -18.10 8.98 32.74 0.29 -17.81 16 11 C 0.09 2.53 5.57 -106.65 -0.59 1.94 16 12 C -0.46 -12.31 8.48 -37.90 -0.32 -12.63 16 13 H 0.07 1.83 6.71 -52.48 -0.35 1.47 16 14 C 0.08 1.95 5.16 -17.33 -0.09 1.86 16 15 N -0.79 -21.34 10.97 55.55 0.61 -20.73 16 16 Si 0.90 19.09 29.59 -169.99 -5.03 14.06 16 17 H -0.27 -5.66 7.11 56.52 0.40 -5.25 16 18 H -0.28 -5.80 7.11 56.52 0.40 -5.39 16 19 H -0.26 -5.49 7.11 56.52 0.40 -5.09 16 20 C -0.17 -4.62 8.59 -38.80 -0.33 -4.95 16 21 C 0.03 0.32 6.10 -67.72 -0.41 -0.10 16 22 C -0.22 -2.30 9.51 -26.70 -0.25 -2.55 16 23 C -0.17 -1.94 9.99 -26.70 -0.27 -2.21 16 24 H 0.03 0.30 7.23 -51.93 -0.38 -0.08 16 25 H 0.07 0.86 6.63 -51.93 -0.34 0.52 16 26 H 0.07 1.09 6.37 -51.93 -0.33 0.76 16 27 H 0.05 0.55 8.12 -51.93 -0.42 0.13 16 28 H 0.08 1.17 7.96 -51.93 -0.41 0.76 16 29 H 0.05 0.87 5.83 -51.93 -0.30 0.56 16 30 H 0.05 0.86 7.66 -51.93 -0.40 0.46 16 31 H 0.09 1.83 6.26 -52.49 -0.33 1.50 16 32 H 0.09 1.76 8.06 -52.48 -0.42 1.34 16 33 H 0.38 6.43 8.83 -40.82 -0.36 6.07 16 34 H 0.39 7.77 7.06 -40.82 -0.29 7.48 16 35 H 0.28 6.92 8.30 -40.82 -0.34 6.58 16 36 H 0.13 3.66 6.23 -52.49 -0.33 3.34 16 37 H 0.12 1.31 7.93 -51.93 -0.41 0.90 16 38 H 0.10 0.99 5.90 -51.92 -0.31 0.68 16 39 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.10 1.21 7.56 -51.93 -0.39 0.81 16 LS Contribution 328.60 15.07 4.95 4.95 Total: -1.00 -29.96 328.60 -9.49 -39.45 By element: Atomic # 1 Polarization: 24.22 SS G_CDS: -5.76 Total: 18.46 kcal Atomic # 6 Polarization: -19.44 SS G_CDS: -3.21 Total: -22.64 kcal Atomic # 7 Polarization: -46.82 SS G_CDS: -0.25 Total: -47.07 kcal Atomic # 8 Polarization: -7.02 SS G_CDS: -0.20 Total: -7.22 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -5.03 Total: 14.06 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -29.96 -9.49 -39.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234264876.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.667 kcal (2) G-P(sol) polarization free energy of solvation -29.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.450 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds