Wall clock time and date at job start Mon Mar 30 2020 06:19:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42904 * 113.99962 * 2 1 4 4 C 1.53005 * 109.46843 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47156 * 65.00361 * 4 3 2 6 6 C 1.36936 * 120.00184 * 269.99786 * 5 4 3 7 7 H 1.08001 * 119.99858 * 140.53366 * 6 5 4 8 8 C 1.38810 * 120.00065 * 320.54347 * 6 5 4 9 9 N 1.31626 * 119.99595 * 341.84504 * 8 6 5 10 10 Si 1.86802 * 120.00450 * 161.84948 * 8 6 5 11 11 H 1.48502 * 109.46650 * 89.99378 * 10 8 6 12 12 H 1.48493 * 109.47091 * 209.99698 * 10 8 6 13 13 H 1.48501 * 109.46905 * 329.99845 * 10 8 6 14 14 C 1.46505 * 119.99992 * 89.99780 * 5 4 3 15 15 C 1.52995 * 109.46959 * 95.08561 * 14 5 4 16 16 H 1.08998 * 110.83369 * 51.28339 * 15 14 5 17 17 C 1.54710 * 110.93829 * 287.53522 * 15 14 5 18 18 O 1.43771 * 102.78590 * 216.53939 * 17 15 14 19 19 C 1.36130 * 109.25716 * 27.68756 * 18 17 15 20 20 C 1.39287 * 129.88793 * 161.39966 * 19 18 17 21 21 C 1.37936 * 120.24061 * 179.35200 * 20 19 18 22 22 C 1.38286 * 120.34977 * 0.03960 * 21 20 19 23 23 C 1.38342 * 119.76882 * 0.16963 * 22 21 20 24 24 C 1.37737 * 119.97993 * 359.91759 * 23 22 21 25 25 H 1.08994 * 109.47448 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47056 * 299.99495 * 1 2 3 27 27 H 1.09003 * 109.47344 * 59.99374 * 1 2 3 28 28 H 1.09001 * 109.46702 * 60.00882 * 3 2 1 29 29 H 1.08996 * 109.47539 * 300.00202 * 3 2 1 30 30 H 1.09001 * 109.47009 * 305.00154 * 4 3 2 31 31 H 1.08996 * 109.46571 * 185.00622 * 4 3 2 32 32 H 0.97007 * 119.99832 * 180.02562 * 9 8 6 33 33 H 1.08998 * 109.46781 * 335.08534 * 14 5 4 34 34 H 1.08997 * 109.46740 * 215.08855 * 14 5 4 35 35 H 1.08998 * 110.75003 * 334.85647 * 17 15 14 36 36 H 1.08997 * 110.75006 * 98.03116 * 17 15 14 37 37 H 1.08002 * 119.87641 * 359.36849 * 20 19 18 38 38 H 1.07992 * 119.81983 * 180.31643 * 21 20 19 39 39 H 1.08000 * 120.11200 * 180.16006 * 22 21 20 40 40 H 1.08004 * 120.01079 * 179.88519 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5645 -1.2527 6 6 4.0968 -0.7969 -1.3370 7 1 3.7927 -1.3114 -2.2366 8 6 4.6101 -1.5157 -0.2662 9 7 5.3017 -0.8994 0.6689 10 14 4.3194 -3.3574 -0.1521 11 1 5.4210 -4.0759 -0.8418 12 1 4.2799 -3.7649 1.2753 13 1 3.0264 -3.6955 -0.7995 14 6 4.2864 1.4008 -2.4148 15 6 5.7898 1.6819 -2.4534 16 1 6.3595 0.7562 -2.3729 17 6 6.1944 2.6794 -1.3422 18 8 7.2176 3.4650 -1.9770 19 6 7.0010 3.4828 -3.3208 20 6 7.4861 4.3552 -4.2923 21 6 7.1449 4.1789 -5.6171 22 6 6.3182 3.1359 -5.9928 23 6 5.8287 2.2676 -5.0336 24 6 6.1667 2.4429 -3.7099 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 1.6887 1.8463 0.8901 29 1 1.6886 1.8465 -0.8899 30 1 3.8514 0.5681 0.8409 31 1 3.9785 2.1764 0.0890 32 1 5.6608 -1.4018 1.4171 33 1 3.7424 2.3424 -2.3406 34 1 3.9903 0.8810 -3.3260 35 1 5.3482 3.3048 -1.0578 36 1 6.5912 2.1515 -0.4751 37 1 8.1320 5.1725 -4.0072 38 1 7.5290 4.8563 -6.3653 39 1 6.0556 2.9999 -7.0316 40 1 5.1813 1.4528 -5.3225 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000317213708.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:54 Heat of formation + Delta-G solvation = -26.389579 kcal Electronic energy + Delta-G solvation = -22036.067440 eV Core-core repulsion = 18817.304760 eV Total energy + Delta-G solvation = -3218.762680 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.70748 -37.28518 -37.00497 -35.56367 -32.74254 -31.05978 -29.81514 -29.19946 -28.24962 -25.70425 -25.32056 -23.38188 -22.65812 -21.66122 -20.76656 -19.67205 -17.01252 -16.65950 -16.13965 -15.80799 -15.45009 -15.15319 -15.06466 -14.51254 -14.05991 -13.88038 -13.57161 -13.39253 -13.09225 -12.72383 -12.47873 -12.20964 -11.74887 -11.71593 -11.36084 -11.30424 -10.87426 -10.80931 -10.67657 -10.50877 -10.33011 -10.26983 -9.97806 -9.86143 -9.75010 -8.84447 -8.59812 -8.43114 -7.77992 -6.53872 -5.73733 -3.32703 1.59912 1.65820 3.42233 3.49373 3.54902 3.73190 4.03740 4.53522 4.66885 4.97049 5.07698 5.20334 5.33175 5.41123 5.49525 5.61309 5.67805 5.69132 5.75411 5.79621 5.85407 6.05007 6.11729 6.14294 6.24252 6.27731 6.32110 6.47120 6.52505 6.59829 6.65251 6.71598 6.73287 6.85105 6.92913 6.97969 7.58008 7.63014 7.88124 8.05682 8.59083 9.21754 9.83943 10.40116 11.27954 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018855 B = 0.005360 C = 0.004937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.628405 B = 5222.491811 C = 5670.294802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.354 6.354 3 C 0.046 3.954 4 C 0.141 3.859 5 N -0.575 5.575 6 C -0.241 4.241 7 H 0.056 0.944 8 C 0.021 3.979 9 N -0.894 5.894 10 Si 0.899 3.101 11 H -0.290 1.290 12 H -0.291 1.291 13 H -0.278 1.278 14 C 0.163 3.837 15 C -0.093 4.093 16 H 0.104 0.896 17 C 0.066 3.934 18 O -0.314 6.314 19 C 0.104 3.896 20 C -0.148 4.148 21 C -0.098 4.098 22 C -0.156 4.156 23 C -0.072 4.072 24 C -0.152 4.152 25 H 0.074 0.926 26 H 0.026 0.974 27 H 0.028 0.972 28 H 0.025 0.975 29 H 0.026 0.974 30 H 0.105 0.895 31 H 0.039 0.961 32 H 0.253 0.747 33 H 0.037 0.963 34 H 0.047 0.953 35 H 0.067 0.933 36 H 0.113 0.887 37 H 0.120 0.880 38 H 0.123 0.877 39 H 0.121 0.879 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.726 8.695 -6.834 11.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.272 6.272 3 C -0.033 4.033 4 C 0.014 3.986 5 N -0.294 5.294 6 C -0.371 4.371 7 H 0.073 0.927 8 C -0.179 4.179 9 N -0.537 5.537 10 Si 0.729 3.271 11 H -0.217 1.217 12 H -0.217 1.217 13 H -0.203 1.203 14 C 0.036 3.964 15 C -0.114 4.114 16 H 0.122 0.878 17 C -0.008 4.008 18 O -0.228 6.228 19 C 0.058 3.942 20 C -0.167 4.167 21 C -0.116 4.116 22 C -0.174 4.174 23 C -0.090 4.090 24 C -0.154 4.154 25 H 0.093 0.907 26 H 0.045 0.955 27 H 0.047 0.953 28 H 0.043 0.957 29 H 0.045 0.955 30 H 0.123 0.877 31 H 0.057 0.943 32 H 0.063 0.937 33 H 0.056 0.944 34 H 0.065 0.935 35 H 0.085 0.915 36 H 0.131 0.869 37 H 0.138 0.862 38 H 0.141 0.859 39 H 0.139 0.861 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -1.380 8.546 -6.517 10.836 hybrid contribution -0.517 -0.806 0.199 0.978 sum -1.898 7.740 -6.318 10.170 Atomic orbital electron populations 1.22632 0.84264 1.01480 0.98386 1.88219 1.16535 1.27636 1.94812 1.23420 0.98930 0.84147 0.96809 1.21085 0.87491 0.96573 0.93444 1.43716 1.74994 1.02718 1.07982 1.18829 1.35100 0.81482 1.01649 0.92666 1.25095 0.96245 0.97715 0.98843 1.69888 1.35253 1.35289 1.13292 0.86371 0.78057 0.85840 0.76832 1.21705 1.21706 1.20338 1.20875 0.89328 0.93889 0.92345 1.22223 1.02644 0.98325 0.88198 0.87784 1.23937 0.89066 0.90984 0.96816 1.86782 1.49589 1.70839 1.15622 1.19702 0.95480 0.94290 0.84716 1.20173 1.05052 0.99959 0.91515 1.20726 0.98133 0.98108 0.94633 1.20954 1.00615 0.96810 0.99030 1.20348 0.98820 0.98898 0.90967 1.21191 1.01124 0.97171 0.95886 0.90721 0.95545 0.95326 0.95736 0.95548 0.87710 0.94304 0.93680 0.94446 0.93474 0.91514 0.86937 0.86151 0.85890 0.86094 0.85911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 101.05 1.11 1.60 16 2 O -0.35 -7.71 10.18 -35.23 -0.36 -8.07 16 3 C 0.05 0.91 6.28 37.16 0.23 1.15 16 4 C 0.14 3.11 5.53 -4.04 -0.02 3.09 16 5 N -0.57 -13.36 2.35 -173.24 -0.41 -13.77 16 6 C -0.24 -6.33 8.96 -15.06 -0.13 -6.46 16 7 H 0.06 1.49 7.89 -52.49 -0.41 1.07 16 8 C 0.02 0.56 5.02 -17.43 -0.09 0.47 16 9 N -0.89 -24.68 11.40 55.49 0.63 -24.04 16 10 Si 0.90 21.85 29.59 -169.99 -5.03 16.82 16 11 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 12 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 13 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 14 C 0.16 3.26 5.06 -4.04 -0.02 3.24 16 15 C -0.09 -1.81 3.32 -90.41 -0.30 -2.11 16 16 H 0.10 2.34 8.14 -51.93 -0.42 1.92 16 17 C 0.07 1.24 6.78 38.06 0.26 1.50 16 18 O -0.31 -5.92 11.10 -20.15 -0.22 -6.14 16 19 C 0.10 1.82 7.04 -38.95 -0.27 1.54 16 20 C -0.15 -2.17 10.06 -39.30 -0.40 -2.57 16 21 C -0.10 -1.24 10.02 -39.67 -0.40 -1.64 16 22 C -0.16 -2.03 10.07 -39.53 -0.40 -2.43 16 23 C -0.07 -1.10 9.87 -39.73 -0.39 -1.49 16 24 C -0.15 -2.67 5.69 -104.10 -0.59 -3.26 16 25 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 26 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.11 2.69 5.53 -51.93 -0.29 2.40 16 31 H 0.04 0.78 6.59 -51.93 -0.34 0.44 16 32 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 33 H 0.04 0.70 7.83 -51.93 -0.41 0.29 16 34 H 0.05 0.94 7.99 -51.93 -0.41 0.53 16 35 H 0.07 1.18 6.92 -51.93 -0.36 0.82 16 36 H 0.11 2.25 8.14 -51.93 -0.42 1.83 16 37 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 38 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 39 H 0.12 1.25 8.06 -52.49 -0.42 0.82 16 40 H 0.12 1.74 8.04 -52.48 -0.42 1.32 16 LS Contribution 330.90 15.07 4.99 4.99 Total: -1.00 -28.94 330.90 -7.82 -36.76 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -6.01 Total: 0.84 kcal Atomic # 6 Polarization: -5.97 SS G_CDS: -1.41 Total: -7.38 kcal Atomic # 7 Polarization: -38.04 SS G_CDS: 0.23 Total: -37.81 kcal Atomic # 8 Polarization: -13.63 SS G_CDS: -0.58 Total: -14.21 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.03 Total: 16.82 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -28.94 -7.82 -36.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000317213708.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.366 kcal (2) G-P(sol) polarization free energy of solvation -28.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds