Wall clock time and date at job start Mon Mar 30 2020 06:19:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42904 * 113.99962 * 2 1 4 4 C 1.53005 * 109.46843 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47156 * 65.00361 * 4 3 2 6 6 C 1.36936 * 120.00184 * 269.99786 * 5 4 3 7 7 H 1.08001 * 119.99858 * 140.53366 * 6 5 4 8 8 C 1.38810 * 120.00065 * 320.54347 * 6 5 4 9 9 N 1.31626 * 119.99595 * 341.84504 * 8 6 5 10 10 Si 1.86802 * 120.00450 * 161.84948 * 8 6 5 11 11 H 1.48502 * 109.46650 * 89.99378 * 10 8 6 12 12 H 1.48493 * 109.47091 * 209.99698 * 10 8 6 13 13 H 1.48501 * 109.46905 * 329.99845 * 10 8 6 14 14 C 1.46505 * 119.99992 * 89.99780 * 5 4 3 15 15 C 1.52995 * 109.46959 * 95.08561 * 14 5 4 16 16 H 1.08998 * 110.83369 * 51.28339 * 15 14 5 17 17 C 1.54710 * 110.93829 * 287.53522 * 15 14 5 18 18 O 1.43771 * 102.78590 * 216.53939 * 17 15 14 19 19 C 1.36130 * 109.25716 * 27.68756 * 18 17 15 20 20 C 1.39287 * 129.88793 * 161.39966 * 19 18 17 21 21 C 1.37936 * 120.24061 * 179.35200 * 20 19 18 22 22 C 1.38286 * 120.34977 * 0.03960 * 21 20 19 23 23 C 1.38342 * 119.76882 * 0.16963 * 22 21 20 24 24 C 1.37737 * 119.97993 * 359.91759 * 23 22 21 25 25 H 1.08994 * 109.47448 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47056 * 299.99495 * 1 2 3 27 27 H 1.09003 * 109.47344 * 59.99374 * 1 2 3 28 28 H 1.09001 * 109.46702 * 60.00882 * 3 2 1 29 29 H 1.08996 * 109.47539 * 300.00202 * 3 2 1 30 30 H 1.09001 * 109.47009 * 305.00154 * 4 3 2 31 31 H 1.08996 * 109.46571 * 185.00622 * 4 3 2 32 32 H 0.97007 * 119.99832 * 180.02562 * 9 8 6 33 33 H 1.08998 * 109.46781 * 335.08534 * 14 5 4 34 34 H 1.08997 * 109.46740 * 215.08855 * 14 5 4 35 35 H 1.08998 * 110.75003 * 334.85647 * 17 15 14 36 36 H 1.08997 * 110.75006 * 98.03116 * 17 15 14 37 37 H 1.08002 * 119.87641 * 359.36849 * 20 19 18 38 38 H 1.07992 * 119.81983 * 180.31643 * 21 20 19 39 39 H 1.08000 * 120.11200 * 180.16006 * 22 21 20 40 40 H 1.08004 * 120.01079 * 179.88519 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5645 -1.2527 6 6 4.0968 -0.7969 -1.3370 7 1 3.7927 -1.3114 -2.2366 8 6 4.6101 -1.5157 -0.2662 9 7 5.3017 -0.8994 0.6689 10 14 4.3194 -3.3574 -0.1521 11 1 5.4210 -4.0759 -0.8418 12 1 4.2799 -3.7649 1.2753 13 1 3.0264 -3.6955 -0.7995 14 6 4.2864 1.4008 -2.4148 15 6 5.7898 1.6819 -2.4534 16 1 6.3595 0.7562 -2.3729 17 6 6.1944 2.6794 -1.3422 18 8 7.2176 3.4650 -1.9770 19 6 7.0010 3.4828 -3.3208 20 6 7.4861 4.3552 -4.2923 21 6 7.1449 4.1789 -5.6171 22 6 6.3182 3.1359 -5.9928 23 6 5.8287 2.2676 -5.0336 24 6 6.1667 2.4429 -3.7099 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 1.6887 1.8463 0.8901 29 1 1.6886 1.8465 -0.8899 30 1 3.8514 0.5681 0.8409 31 1 3.9785 2.1764 0.0890 32 1 5.6608 -1.4018 1.4171 33 1 3.7424 2.3424 -2.3406 34 1 3.9903 0.8810 -3.3260 35 1 5.3482 3.3048 -1.0578 36 1 6.5912 2.1515 -0.4751 37 1 8.1320 5.1725 -4.0072 38 1 7.5290 4.8563 -6.3653 39 1 6.0556 2.9999 -7.0316 40 1 5.1813 1.4528 -5.3225 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000317213708.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:53 Heat of formation + Delta-G solvation = -42.776831 kcal Electronic energy + Delta-G solvation = -22036.778045 eV Core-core repulsion = 18817.304760 eV Total energy + Delta-G solvation = -3219.473284 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.04282 -38.85904 -38.23586 -37.25109 -34.37555 -32.84802 -31.04702 -30.56927 -29.80801 -27.14846 -27.05967 -25.04085 -23.96464 -22.89522 -22.38849 -21.25238 -18.59921 -18.27044 -17.47899 -17.34234 -16.86479 -16.69083 -16.35911 -16.30123 -15.62243 -15.33618 -15.23962 -14.88289 -14.39015 -14.13363 -13.84818 -13.52552 -13.41194 -13.22731 -13.03222 -12.73542 -12.56052 -12.40326 -12.34812 -12.06175 -11.95879 -11.79437 -11.61210 -11.52185 -11.46759 -10.45752 -10.33882 -9.76881 -9.04945 -8.46109 -7.74297 -5.36328 0.43821 0.49264 1.45774 1.49373 1.58230 2.41816 2.56677 2.86199 3.20568 3.39531 3.49159 3.76276 3.87269 4.07554 4.10309 4.28084 4.38260 4.44167 4.53806 4.57378 4.62295 4.63667 4.72036 4.73494 4.75260 4.80007 4.84749 4.96727 4.98070 5.07506 5.20209 5.30686 5.48493 5.59780 5.64731 5.72846 5.77639 5.84002 6.31317 6.49716 6.67916 7.26091 7.91696 8.43404 9.22264 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018855 B = 0.005360 C = 0.004937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.628405 B = 5222.491811 C = 5670.294802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.397 6.397 3 C 0.053 3.947 4 C 0.140 3.860 5 N -0.585 5.585 6 C -0.239 4.239 7 H 0.044 0.956 8 C -0.023 4.023 9 N -0.916 5.916 10 Si 0.946 3.054 11 H -0.289 1.289 12 H -0.295 1.295 13 H -0.278 1.278 14 C 0.169 3.831 15 C -0.084 4.084 16 H 0.061 0.939 17 C 0.075 3.925 18 O -0.329 6.329 19 C 0.072 3.928 20 C -0.149 4.149 21 C -0.086 4.086 22 C -0.145 4.145 23 C -0.082 4.082 24 C -0.175 4.175 25 H 0.082 0.918 26 H 0.047 0.953 27 H 0.042 0.958 28 H 0.048 0.952 29 H 0.038 0.962 30 H 0.069 0.931 31 H 0.054 0.946 32 H 0.247 0.753 33 H 0.055 0.945 34 H 0.045 0.955 35 H 0.079 0.921 36 H 0.089 0.911 37 H 0.140 0.860 38 H 0.166 0.834 39 H 0.157 0.843 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.407 10.391 -9.111 14.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.316 6.316 3 C -0.026 4.026 4 C 0.014 3.986 5 N -0.305 5.305 6 C -0.369 4.369 7 H 0.062 0.938 8 C -0.220 4.220 9 N -0.560 5.560 10 Si 0.776 3.224 11 H -0.216 1.216 12 H -0.221 1.221 13 H -0.203 1.203 14 C 0.043 3.957 15 C -0.105 4.105 16 H 0.079 0.921 17 C 0.001 3.999 18 O -0.244 6.244 19 C 0.027 3.973 20 C -0.168 4.168 21 C -0.103 4.103 22 C -0.163 4.163 23 C -0.100 4.100 24 C -0.176 4.176 25 H 0.100 0.900 26 H 0.065 0.935 27 H 0.061 0.939 28 H 0.066 0.934 29 H 0.056 0.944 30 H 0.087 0.913 31 H 0.072 0.928 32 H 0.057 0.943 33 H 0.073 0.927 34 H 0.063 0.937 35 H 0.097 0.903 36 H 0.107 0.893 37 H 0.157 0.843 38 H 0.183 0.817 39 H 0.175 0.825 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -2.073 10.256 -8.815 13.681 hybrid contribution -0.316 -1.250 0.760 1.497 sum -2.389 9.005 -8.054 12.316 Atomic orbital electron populations 1.22818 0.81621 1.02604 1.00025 1.88140 1.19575 1.28745 1.95180 1.23261 0.96927 0.83997 0.98394 1.21010 0.89568 0.96357 0.91699 1.43819 1.75494 1.02176 1.09048 1.18885 1.33893 0.83145 1.01016 0.93841 1.25597 0.96818 1.00439 0.99126 1.70012 1.36463 1.35936 1.13627 0.85622 0.77734 0.82746 0.76289 1.21567 1.22135 1.20304 1.20853 0.89923 0.93985 0.90964 1.21883 1.01372 0.96966 0.90299 0.92059 1.23708 0.89345 0.90962 0.95924 1.86732 1.49812 1.70940 1.16897 1.20066 0.97136 0.95744 0.84321 1.20587 1.04676 0.99709 0.91783 1.21248 0.96579 0.98025 0.94463 1.21400 0.99149 0.95576 1.00159 1.20598 0.99185 0.99770 0.90469 1.21081 1.02878 0.97572 0.96080 0.89992 0.93488 0.93941 0.93408 0.94385 0.91277 0.92817 0.94327 0.92680 0.93706 0.90330 0.89254 0.84258 0.81684 0.82534 0.85390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.81 11.01 113.37 1.25 2.05 16 2 O -0.40 -17.06 10.18 -148.98 -1.52 -18.58 16 3 C 0.05 2.04 6.28 71.98 0.45 2.50 16 4 C 0.14 6.26 5.53 86.38 0.48 6.74 16 5 N -0.59 -27.78 2.35 -702.01 -1.65 -29.43 16 6 C -0.24 -12.88 8.96 84.03 0.75 -12.13 16 7 H 0.04 2.41 7.89 -2.91 -0.02 2.39 16 8 C -0.02 -1.26 5.02 84.86 0.43 -0.84 16 9 N -0.92 -52.54 11.40 21.65 0.25 -52.29 16 10 Si 0.95 45.99 29.59 68.60 2.03 48.02 16 11 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 12 H -0.29 -14.40 7.11 99.48 0.71 -13.69 16 13 H -0.28 -13.32 7.11 99.48 0.71 -12.62 16 14 C 0.17 6.84 5.06 86.38 0.44 7.28 16 15 C -0.08 -3.39 3.32 -10.66 -0.04 -3.43 16 16 H 0.06 2.95 8.14 -2.39 -0.02 2.93 16 17 C 0.08 2.92 6.78 72.57 0.49 3.41 16 18 O -0.33 -12.63 11.10 -95.03 -1.06 -13.69 16 19 C 0.07 2.48 7.04 22.68 0.16 2.64 16 20 C -0.15 -3.95 10.06 22.45 0.23 -3.73 16 21 C -0.09 -1.78 10.02 22.21 0.22 -1.56 16 22 C -0.14 -3.19 10.07 22.31 0.22 -2.97 16 23 C -0.08 -2.36 9.87 22.18 0.22 -2.14 16 24 C -0.17 -6.09 5.69 -19.52 -0.11 -6.20 16 25 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 26 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.07 3.67 5.53 -2.39 -0.01 3.65 16 31 H 0.05 2.17 6.59 -2.39 -0.02 2.16 16 32 H 0.25 13.97 8.31 -92.70 -0.77 13.19 16 33 H 0.05 2.02 7.83 -2.39 -0.02 2.00 16 34 H 0.04 1.81 7.99 -2.39 -0.02 1.79 16 35 H 0.08 2.81 6.92 -2.39 -0.02 2.79 16 36 H 0.09 3.83 8.14 -2.39 -0.02 3.81 16 37 H 0.14 3.10 8.06 -2.91 -0.02 3.08 16 38 H 0.17 2.10 8.06 -2.91 -0.02 2.08 16 39 H 0.16 2.36 8.06 -2.91 -0.02 2.34 16 40 H 0.13 3.45 8.04 -2.91 -0.02 3.43 16 Total: -1.00 -64.70 330.90 4.26 -60.43 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: 1.01 Total: 13.91 kcal Atomic # 6 Polarization: -13.56 SS G_CDS: 5.19 Total: -8.37 kcal Atomic # 7 Polarization: -80.32 SS G_CDS: -1.40 Total: -81.72 kcal Atomic # 8 Polarization: -29.69 SS G_CDS: -2.57 Total: -32.27 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.02 kcal Total: -64.70 4.26 -60.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000317213708.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.656 kcal (2) G-P(sol) polarization free energy of solvation -64.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds