Wall clock time and date at job start Mon Mar 30 2020 04:56:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.46778 * 2 1 4 4 H 1.08996 * 109.47102 * 54.99572 * 3 2 1 5 5 N 1.46905 * 109.46873 * 294.99961 * 3 2 1 6 6 C 1.52997 * 109.47007 * 175.00038 * 3 2 1 7 7 H 1.09001 * 109.47234 * 60.00148 * 6 3 2 8 8 C 1.50699 * 109.47304 * 299.99744 * 6 3 2 9 9 C 1.39865 * 126.04113 * 266.17637 * 8 6 3 10 10 N 1.30839 * 108.20263 * 179.97438 * 9 8 6 11 11 N 1.40080 * 108.20616 * 0.02562 * 10 9 8 12 12 C 1.46501 * 126.03826 * 180.26591 * 11 10 9 13 13 C 1.34947 * 107.92730 * 359.97438 * 11 10 9 14 14 N 1.46500 * 109.47304 * 179.97438 * 6 3 2 15 15 C 1.36936 * 120.00524 * 231.06767 * 14 6 3 16 16 H 1.08001 * 119.99572 * 34.74052 * 15 14 6 17 17 C 1.38810 * 120.00083 * 214.74798 * 15 14 6 18 18 N 1.31620 * 120.00084 * 26.80580 * 17 15 14 19 19 Si 1.86806 * 119.99703 * 206.81534 * 17 15 14 20 20 H 1.48498 * 109.47122 * 94.97541 * 19 17 15 21 21 H 1.48502 * 109.46855 * 214.97629 * 19 17 15 22 22 H 1.48500 * 109.47063 * 334.97419 * 19 17 15 23 23 C 1.46500 * 119.99683 * 51.06433 * 14 6 3 24 24 C 1.47200 * 109.47278 * 267.07778 * 23 14 6 25 25 N 5.07362 * 89.99381 * 358.10747 * 2 1 3 26 26 H 1.09006 * 109.47006 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47348 * 300.00012 * 1 2 3 28 28 H 1.09006 * 109.47266 * 60.00243 * 1 2 3 29 29 H 1.09000 * 109.47348 * 239.99987 * 2 1 3 30 30 H 1.08993 * 109.47210 * 119.99420 * 2 1 3 31 31 H 1.00906 * 110.99411 * 180.02562 * 5 3 2 32 32 H 1.00906 * 110.99992 * 303.95229 * 5 3 2 33 33 H 1.07997 * 125.89762 * 359.97438 * 9 8 6 34 34 H 1.09003 * 109.47026 * 269.68652 * 12 11 10 35 35 H 1.08995 * 109.47358 * 29.68859 * 12 11 10 36 36 H 1.08999 * 109.47537 * 149.69056 * 12 11 10 37 37 H 1.08002 * 126.13339 * 180.02562 * 13 11 10 38 38 H 0.97004 * 119.99461 * 180.02562 * 18 17 15 39 39 H 1.09002 * 109.47483 * 27.07663 * 23 14 6 40 40 H 1.09001 * 109.47021 * 147.07931 * 23 14 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9816 0.8417 5 7 1.6512 2.0993 -1.2553 6 6 3.5647 1.4445 0.1257 7 1 3.9994 0.9055 -0.7161 8 6 3.9635 0.7708 1.4134 9 6 4.2086 1.4082 2.6340 10 7 4.5279 0.4951 3.5150 11 7 4.4965 -0.7540 2.8818 12 6 4.7850 -2.0460 3.5093 13 6 4.1474 -0.5578 1.5931 14 7 4.0531 2.8257 0.1251 15 6 5.0570 3.1967 -0.7291 16 1 5.1205 2.7542 -1.7122 17 6 5.9932 4.1412 -0.3312 18 7 6.2699 4.2961 0.9462 19 14 6.8600 5.1928 -1.6089 20 1 6.1423 6.4844 -1.7566 21 1 8.2565 5.4493 -1.1740 22 1 6.8703 4.4804 -2.9119 23 6 3.4673 3.8101 1.0383 24 6 2.3736 4.5217 0.3569 25 7 1.5294 5.0709 -0.1676 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5137 0.8900 31 1 1.9771 3.0540 -1.2798 32 1 1.9881 1.5819 -2.0535 33 1 4.1453 2.4705 2.8176 34 1 5.8477 -2.2681 3.4118 35 1 4.5178 -2.0048 4.5652 36 1 4.2042 -2.8265 3.0178 37 1 4.0347 -1.3237 0.8401 38 1 6.9238 4.9565 1.2241 39 1 3.0761 3.3009 1.9192 40 1 4.2324 4.5248 1.3416 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000043126708.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:56:16 Heat of formation + Delta-G solvation = 116.043298 kcal Electronic energy + Delta-G solvation = -22621.063360 eV Core-core repulsion = 19473.062536 eV Total energy + Delta-G solvation = -3148.000824 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.160 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.00640 -39.25685 -37.01759 -36.06288 -34.03857 -33.09928 -31.76448 -31.38195 -29.00466 -28.43119 -26.57890 -25.33898 -23.04540 -22.06090 -21.31401 -20.47762 -19.27618 -18.16814 -17.40258 -16.90574 -16.49479 -16.20388 -15.91788 -15.46324 -15.40249 -15.01967 -14.54800 -14.40902 -14.20448 -13.81479 -13.56777 -13.38753 -13.31280 -13.24071 -13.13245 -12.87710 -12.79275 -12.49862 -12.27114 -12.09553 -12.05817 -11.76552 -11.55041 -11.51670 -11.25211 -10.58860 -10.05687 -9.70072 -8.86146 -8.69425 -7.90906 -5.44786 1.18847 1.45939 1.54203 1.57391 1.92076 1.97350 2.12863 2.16904 2.52257 3.17253 3.51648 3.67012 3.95217 3.99291 4.19259 4.21605 4.44016 4.47186 4.54257 4.55860 4.65137 4.72567 4.78429 4.84924 4.97293 5.03595 5.15610 5.24265 5.24995 5.37755 5.44254 5.57293 5.61236 5.75044 5.92853 6.36212 6.41571 6.46110 6.71858 6.89909 6.99575 7.07750 7.74390 8.26774 9.07699 Molecular weight = 277.16amu Principal moments of inertia in cm(-1) A = 0.014055 B = 0.007927 C = 0.005946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1991.661993 B = 3531.244367 C = 4707.701510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.105 4.105 3 C 0.093 3.907 4 H 0.051 0.949 5 N -0.840 5.840 6 C 0.216 3.784 7 H 0.068 0.932 8 C -0.239 4.239 9 C 0.056 3.944 10 N -0.342 5.342 11 N -0.383 5.383 12 C 0.096 3.904 13 C 0.055 3.945 14 N -0.562 5.562 15 C -0.272 4.272 16 H 0.064 0.936 17 C -0.015 4.015 18 N -0.891 5.891 19 Si 0.938 3.062 20 H -0.295 1.295 21 H -0.295 1.295 22 H -0.271 1.271 23 C 0.218 3.782 24 C 0.214 3.786 25 N -0.498 5.498 26 H 0.062 0.938 27 H 0.035 0.965 28 H 0.051 0.949 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.335 0.665 32 H 0.335 0.665 33 H 0.170 0.830 34 H 0.076 0.924 35 H 0.087 0.913 36 H 0.116 0.884 37 H 0.201 0.799 38 H 0.255 0.745 39 H 0.098 0.902 40 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.296 -14.263 2.327 15.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.143 4.143 3 C -0.020 4.020 4 H 0.070 0.930 5 N -0.370 5.370 6 C 0.107 3.893 7 H 0.086 0.914 8 C -0.253 4.253 9 C -0.129 4.129 10 N -0.165 5.165 11 N -0.166 5.166 12 C -0.044 4.044 13 C -0.092 4.092 14 N -0.281 5.281 15 C -0.402 4.402 16 H 0.081 0.919 17 C -0.215 4.215 18 N -0.533 5.533 19 Si 0.768 3.232 20 H -0.223 1.223 21 H -0.222 1.222 22 H -0.196 1.196 23 C 0.088 3.912 24 C -0.104 4.104 25 N -0.179 5.179 26 H 0.081 0.919 27 H 0.055 0.945 28 H 0.070 0.930 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.149 0.851 32 H 0.147 0.853 33 H 0.187 0.813 34 H 0.095 0.905 35 H 0.106 0.894 36 H 0.135 0.865 37 H 0.218 0.782 38 H 0.065 0.935 39 H 0.115 0.885 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -5.784 -13.883 3.148 15.365 hybrid contribution 2.029 1.262 -1.232 2.688 sum -3.755 -12.621 1.916 13.306 Atomic orbital electron populations 1.21596 0.95577 1.01047 1.01178 1.21501 0.96171 0.94172 1.02460 1.21745 0.92366 0.95872 0.92052 0.93034 1.59247 1.66572 1.07057 1.04076 1.19841 0.93526 0.83748 0.92193 0.91415 1.20905 1.13672 0.93113 0.97641 1.23855 0.98128 0.99054 0.91847 1.77215 1.26435 0.89786 1.23035 1.48731 1.53432 1.06677 1.07809 1.22100 1.02963 0.79190 1.00102 1.22621 1.00895 0.97830 0.87877 1.43701 1.37715 1.02995 1.43669 1.19167 1.04031 1.22761 0.94252 0.91864 1.25521 0.96850 1.02555 0.96553 1.70093 1.33442 1.34520 1.15260 0.85718 0.77340 0.79601 0.80536 1.22264 1.22194 1.19601 1.18860 0.88542 0.92903 0.90931 1.31817 0.93660 0.92013 0.92898 1.80959 1.13834 1.12255 1.10878 0.91905 0.94532 0.93008 0.91094 0.90834 0.85111 0.85281 0.81287 0.90507 0.89448 0.86525 0.78179 0.93517 0.88475 0.87189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.24 9.80 71.98 0.71 -2.53 16 2 C -0.10 -2.53 5.25 30.60 0.16 -2.37 16 3 C 0.09 2.89 1.78 44.92 0.08 2.97 16 4 H 0.05 1.82 6.91 -2.39 -0.02 1.80 16 5 N -0.84 -27.94 8.67 -168.67 -1.46 -29.40 16 6 C 0.22 7.47 2.34 44.24 0.10 7.57 16 7 H 0.07 2.38 7.91 -2.39 -0.02 2.36 16 8 C -0.24 -8.04 4.64 -20.14 -0.09 -8.14 16 9 C 0.06 2.10 10.58 85.23 0.90 3.00 16 10 N -0.34 -12.34 12.58 -57.03 -0.72 -13.06 16 11 N -0.38 -10.61 4.01 -369.56 -1.48 -12.09 16 12 C 0.10 1.58 11.47 127.77 1.47 3.04 16 13 C 0.05 1.46 9.51 83.54 0.79 2.26 16 14 N -0.56 -23.28 1.71 -692.69 -1.19 -24.47 16 15 C -0.27 -12.96 9.34 84.03 0.78 -12.17 16 16 H 0.06 3.03 7.96 -2.91 -0.02 3.01 16 17 C -0.01 -0.73 4.86 84.86 0.41 -0.31 16 18 N -0.89 -45.86 11.59 21.65 0.25 -45.61 16 19 Si 0.94 41.75 29.63 68.60 2.03 43.79 16 20 H -0.30 -13.55 7.11 99.48 0.71 -12.85 16 21 H -0.30 -13.29 7.11 99.48 0.71 -12.58 16 22 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 23 C 0.22 8.90 4.05 84.57 0.34 9.24 16 24 C 0.21 8.96 12.53 89.45 1.12 10.08 16 25 N -0.50 -21.82 17.93 20.00 0.36 -21.46 16 26 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 27 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.05 1.35 7.75 -2.38 -0.02 1.33 16 29 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.07 1.69 5.78 -2.39 -0.01 1.67 16 31 H 0.33 12.99 5.34 -89.69 -0.48 12.52 16 32 H 0.34 10.13 8.98 -89.69 -0.81 9.33 16 33 H 0.17 6.70 5.38 -2.91 -0.02 6.69 16 34 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.20 3.68 8.05 -2.91 -0.02 3.66 16 38 H 0.26 12.95 8.31 -92.71 -0.77 12.18 16 39 H 0.10 3.60 5.06 -2.39 -0.01 3.59 16 40 H 0.11 5.07 5.52 -2.39 -0.01 5.06 16 Total: -1.00 -60.19 325.39 4.36 -55.82 By element: Atomic # 1 Polarization: 34.05 SS G_CDS: -0.21 Total: 33.85 kcal Atomic # 6 Polarization: 5.86 SS G_CDS: 6.78 Total: 12.64 kcal Atomic # 7 Polarization: -141.86 SS G_CDS: -4.24 Total: -146.10 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 2.03 Total: 43.79 kcal Total: -60.19 4.36 -55.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043126708.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.865 kcal (2) G-P(sol) polarization free energy of solvation -60.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds