Wall clock time and date at job start Mon Mar 30 2020 05:44:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36969 * 125.07263 * 2 1 4 4 C 1.34189 * 109.92123 * 179.81274 * 3 2 1 5 5 C 1.50689 * 126.49740 * 180.19172 * 4 3 2 6 6 C 1.50702 * 109.47189 * 265.28910 * 5 4 3 7 7 H 1.08002 * 119.99545 * 359.97438 * 6 5 4 8 8 C 1.37877 * 120.00212 * 179.97438 * 6 5 4 9 9 N 1.31511 * 120.00261 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 119.99978 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47399 * 90.00207 * 10 8 6 12 12 H 1.48499 * 109.47225 * 210.00232 * 10 8 6 13 13 H 1.48509 * 109.47248 * 330.00290 * 10 8 6 14 14 C 1.46561 * 107.00496 * 0.42999 * 4 3 2 15 15 C 1.39654 * 133.93953 * 179.70910 * 14 4 3 16 16 C 1.36553 * 119.84281 * 180.02562 * 15 14 4 17 17 C 1.39281 * 120.47375 * 359.97438 * 16 15 14 18 18 O 1.35943 * 119.72861 * 180.02562 * 17 16 15 19 19 C 1.38206 * 120.54507 * 0.02562 * 17 16 15 20 20 C 1.37701 * 125.07152 * 180.29753 * 2 1 3 21 21 H 1.09002 * 109.47391 * 269.69892 * 1 2 3 22 22 H 1.09001 * 109.46813 * 149.69948 * 1 2 3 23 23 H 1.09004 * 109.47041 * 29.70075 * 1 2 3 24 24 H 1.08002 * 125.03377 * 359.97438 * 3 2 1 25 25 H 1.09006 * 109.47441 * 25.28330 * 5 4 3 26 26 H 1.09000 * 109.47615 * 145.29100 * 5 4 3 27 27 H 0.96997 * 120.00627 * 179.97438 * 9 8 6 28 28 H 1.07995 * 120.07546 * 0.05145 * 15 14 4 29 29 H 1.08001 * 119.76700 * 179.97438 * 16 15 14 30 30 H 0.96695 * 114.00416 * 269.98099 * 18 17 16 31 31 H 1.07999 * 120.12892 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2520 1.1210 0.0000 4 6 3.5473 0.7703 0.0041 5 6 4.7290 1.7053 0.0096 6 6 5.2004 1.9274 -1.4045 7 1 4.6949 1.4398 -2.2250 8 6 6.2768 2.7530 -1.6507 9 7 6.8926 3.3463 -0.6516 10 14 6.8615 3.0277 -3.4034 11 1 6.1506 4.1944 -3.9853 12 1 8.3233 3.2889 -3.4024 13 1 6.5754 1.8180 -4.2161 14 6 3.5947 -0.6946 -0.0035 15 6 4.6312 -1.6305 -0.0088 16 6 4.3416 -2.9650 -0.0162 17 6 3.0187 -3.4008 -0.0179 18 8 2.7478 -4.7329 -0.0247 19 6 1.9792 -2.4900 -0.0127 20 6 2.2562 -1.1270 -0.0059 21 1 -0.3634 -0.0054 1.0276 22 1 -0.3633 -0.8873 -0.5185 23 1 -0.3633 0.8927 -0.5092 24 1 1.8845 2.1366 -0.0004 25 1 4.4358 2.6589 0.4488 26 1 5.5361 1.2675 0.5970 27 1 7.6501 3.9269 -0.8247 28 1 5.6592 -1.2997 -0.0067 29 1 5.1441 -3.6878 -0.0207 30 1 2.6687 -5.1137 -0.9100 31 1 0.9559 -2.8353 -0.0145 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259556021.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:24 Heat of formation + Delta-G solvation = 11.006646 kcal Electronic energy + Delta-G solvation = -15356.384487 eV Core-core repulsion = 12796.312338 eV Total energy + Delta-G solvation = -2560.072149 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 231.100 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.77961 -38.20777 -35.16882 -33.72201 -31.99885 -29.97919 -28.67777 -27.37918 -25.24108 -22.75333 -22.17605 -21.00047 -18.87854 -17.63806 -16.40579 -16.10570 -15.75203 -15.11427 -14.77537 -14.43076 -14.04853 -13.63413 -12.95651 -12.55877 -12.39701 -12.22619 -11.94440 -11.71231 -11.38034 -10.96770 -10.66258 -10.56536 -10.32367 -10.15472 -9.65953 -9.43011 -8.77549 -8.35936 -7.59099 -6.86948 -5.96309 -4.00201 1.52691 2.01143 3.24476 3.33073 3.36465 3.40473 3.46437 4.24059 4.50311 4.57788 4.96861 5.19681 5.31877 5.36056 5.44993 5.47641 5.54127 5.72764 5.98677 6.14133 6.23095 6.52855 6.68585 6.83775 6.98972 7.19436 7.41791 7.55741 7.65341 7.87112 7.90456 7.99606 8.01824 8.43831 9.05219 9.63142 11.12170 Molecular weight = 231.10amu Principal moments of inertia in cm(-1) A = 0.027006 B = 0.007331 C = 0.006343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.565388 B = 3818.612753 C = 4412.935512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.495 5.495 3 C 0.008 3.992 4 C -0.101 4.101 5 C 0.080 3.920 6 C -0.506 4.506 7 H 0.055 0.945 8 C 0.057 3.943 9 N -0.896 5.896 10 Si 0.892 3.108 11 H -0.281 1.281 12 H -0.286 1.286 13 H -0.274 1.274 14 C -0.107 4.107 15 C -0.034 4.034 16 C -0.186 4.186 17 C 0.112 3.888 18 O -0.502 6.502 19 C -0.167 4.167 20 C 0.108 3.892 21 H 0.061 0.939 22 H 0.072 0.928 23 H 0.078 0.922 24 H 0.163 0.837 25 H 0.026 0.974 26 H 0.028 0.972 27 H 0.261 0.739 28 H 0.131 0.869 29 H 0.122 0.878 30 H 0.382 0.618 31 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.607 -9.464 0.373 14.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.181 5.181 3 C -0.112 4.112 4 C -0.106 4.106 5 C 0.042 3.958 6 C -0.544 4.544 7 H 0.073 0.927 8 C -0.144 4.144 9 N -0.536 5.536 10 Si 0.719 3.281 11 H -0.207 1.207 12 H -0.212 1.212 13 H -0.199 1.199 14 C -0.113 4.113 15 C -0.052 4.052 16 C -0.206 4.206 17 C 0.067 3.933 18 O -0.311 6.311 19 C -0.188 4.188 20 C 0.001 3.999 21 H 0.079 0.921 22 H 0.090 0.910 23 H 0.097 0.903 24 H 0.180 0.820 25 H 0.045 0.955 26 H 0.047 0.953 27 H 0.070 0.930 28 H 0.148 0.852 29 H 0.140 0.860 30 H 0.237 0.763 31 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -10.804 -9.210 1.031 14.234 hybrid contribution 0.177 0.161 -1.525 1.544 sum -10.627 -9.049 -0.494 13.967 Atomic orbital electron populations 1.21771 0.78302 1.03409 1.02150 1.43681 1.05073 1.04330 1.64980 1.21573 0.90113 0.90200 1.09358 1.21257 0.95136 0.91623 1.02629 1.17733 0.88911 0.91880 0.97262 1.21124 1.13747 1.27237 0.92298 0.92653 1.24997 0.96538 0.95913 0.96934 1.69952 1.21972 1.31092 1.30585 0.86597 0.77837 0.78514 0.85106 1.20741 1.21222 1.19889 1.19337 0.91449 0.94099 1.06373 1.20292 0.99044 0.91057 0.94827 1.20742 0.95439 0.95959 1.08500 1.17893 0.91442 0.82105 1.01851 1.84812 1.93517 1.19813 1.32993 1.19938 0.98719 0.89484 1.10698 1.17983 0.90583 0.87654 1.03722 0.92051 0.90960 0.90319 0.82009 0.95530 0.95349 0.92962 0.85159 0.86041 0.76301 0.86675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.99 11.03 59.85 0.66 1.65 16 2 N -0.49 -8.40 3.18 -121.78 -0.39 -8.78 16 3 C 0.01 0.15 11.21 -16.68 -0.19 -0.03 16 4 C -0.10 -2.26 5.51 -102.70 -0.57 -2.82 16 5 C 0.08 2.07 5.50 -29.04 -0.16 1.91 16 6 C -0.51 -14.24 9.09 -34.44 -0.31 -14.55 16 7 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 8 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 9 N -0.90 -26.53 13.29 55.43 0.74 -25.79 16 10 Si 0.89 21.64 29.54 -169.99 -5.02 16.61 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 13 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 14 C -0.11 -2.26 6.35 -105.10 -0.67 -2.92 16 15 C -0.03 -0.65 10.05 -39.66 -0.40 -1.05 16 16 C -0.19 -3.12 9.91 -39.80 -0.39 -3.52 16 17 C 0.11 1.79 6.69 -39.21 -0.26 1.53 16 18 O -0.50 -6.73 13.49 -19.56 -0.26 -7.00 16 19 C -0.17 -2.72 9.89 -39.28 -0.39 -3.11 16 20 C 0.11 2.00 6.81 -84.00 -0.57 1.43 16 21 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 22 H 0.07 0.73 8.10 -51.93 -0.42 0.31 16 23 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.16 2.72 8.06 -52.49 -0.42 2.30 16 25 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 28 H 0.13 2.52 8.06 -52.49 -0.42 2.09 16 29 H 0.12 1.76 8.06 -52.49 -0.42 1.34 16 30 H 0.38 3.20 9.06 45.56 0.41 3.61 16 31 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 LS Contribution 276.31 15.07 4.16 4.16 Total: -1.00 -32.55 276.31 -7.05 -39.60 By element: Atomic # 1 Polarization: 4.09 SS G_CDS: -2.93 Total: 1.16 kcal Atomic # 6 Polarization: -16.62 SS G_CDS: -3.35 Total: -19.97 kcal Atomic # 7 Polarization: -34.92 SS G_CDS: 0.35 Total: -34.57 kcal Atomic # 8 Polarization: -6.73 SS G_CDS: -0.26 Total: -7.00 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -32.55 -7.05 -39.60 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259556021.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.608 kcal (2) G-P(sol) polarization free energy of solvation -32.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.602 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds