Wall clock time and date at job start Mon Mar 30 2020 05:44:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36969 * 125.07263 * 2 1 4 4 C 1.34189 * 109.92123 * 179.81274 * 3 2 1 5 5 C 1.50689 * 126.49740 * 180.19172 * 4 3 2 6 6 C 1.50702 * 109.47189 * 265.28910 * 5 4 3 7 7 H 1.08002 * 119.99545 * 359.97438 * 6 5 4 8 8 C 1.37877 * 120.00212 * 179.97438 * 6 5 4 9 9 N 1.31511 * 120.00261 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 119.99978 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47399 * 90.00207 * 10 8 6 12 12 H 1.48499 * 109.47225 * 210.00232 * 10 8 6 13 13 H 1.48509 * 109.47248 * 330.00290 * 10 8 6 14 14 C 1.46561 * 107.00496 * 0.42999 * 4 3 2 15 15 C 1.39654 * 133.93953 * 179.70910 * 14 4 3 16 16 C 1.36553 * 119.84281 * 180.02562 * 15 14 4 17 17 C 1.39281 * 120.47375 * 359.97438 * 16 15 14 18 18 O 1.35943 * 119.72861 * 180.02562 * 17 16 15 19 19 C 1.38206 * 120.54507 * 0.02562 * 17 16 15 20 20 C 1.37701 * 125.07152 * 180.29753 * 2 1 3 21 21 H 1.09002 * 109.47391 * 269.69892 * 1 2 3 22 22 H 1.09001 * 109.46813 * 149.69948 * 1 2 3 23 23 H 1.09004 * 109.47041 * 29.70075 * 1 2 3 24 24 H 1.08002 * 125.03377 * 359.97438 * 3 2 1 25 25 H 1.09006 * 109.47441 * 25.28330 * 5 4 3 26 26 H 1.09000 * 109.47615 * 145.29100 * 5 4 3 27 27 H 0.96997 * 120.00627 * 179.97438 * 9 8 6 28 28 H 1.07995 * 120.07546 * 0.05145 * 15 14 4 29 29 H 1.08001 * 119.76700 * 179.97438 * 16 15 14 30 30 H 0.96695 * 114.00416 * 269.98099 * 18 17 16 31 31 H 1.07999 * 120.12892 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2520 1.1210 0.0000 4 6 3.5473 0.7703 0.0041 5 6 4.7290 1.7053 0.0096 6 6 5.2004 1.9274 -1.4045 7 1 4.6949 1.4398 -2.2250 8 6 6.2768 2.7530 -1.6507 9 7 6.8926 3.3463 -0.6516 10 14 6.8615 3.0277 -3.4034 11 1 6.1506 4.1944 -3.9853 12 1 8.3233 3.2889 -3.4024 13 1 6.5754 1.8180 -4.2161 14 6 3.5947 -0.6946 -0.0035 15 6 4.6312 -1.6305 -0.0088 16 6 4.3416 -2.9650 -0.0162 17 6 3.0187 -3.4008 -0.0179 18 8 2.7478 -4.7329 -0.0247 19 6 1.9792 -2.4900 -0.0127 20 6 2.2562 -1.1270 -0.0059 21 1 -0.3634 -0.0054 1.0276 22 1 -0.3633 -0.8873 -0.5185 23 1 -0.3633 0.8927 -0.5092 24 1 1.8845 2.1366 -0.0004 25 1 4.4358 2.6589 0.4488 26 1 5.5361 1.2675 0.5970 27 1 7.6501 3.9269 -0.8247 28 1 5.6592 -1.2997 -0.0067 29 1 5.1441 -3.6878 -0.0207 30 1 2.6687 -5.1137 -0.9100 31 1 0.9559 -2.8353 -0.0145 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259556021.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:23 Heat of formation + Delta-G solvation = -10.142502 kcal Electronic energy + Delta-G solvation = -15357.301583 eV Core-core repulsion = 12796.312338 eV Total energy + Delta-G solvation = -2560.989245 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 231.100 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.16246 -39.40901 -36.41601 -35.63339 -33.73577 -31.25893 -30.41374 -28.76802 -26.79151 -24.61539 -23.54043 -22.32449 -20.36602 -18.86098 -18.44939 -17.63609 -17.04804 -16.48554 -16.28360 -15.96692 -15.27942 -14.94373 -14.39187 -14.33420 -13.98020 -13.60594 -13.45289 -13.17167 -12.81740 -12.78972 -12.48667 -12.09686 -11.89009 -11.68992 -11.49729 -11.29579 -10.55604 -10.28888 -8.95987 -8.42304 -8.05445 -6.26856 0.16901 0.65190 1.39776 1.41431 1.52604 1.87665 2.00729 2.44425 2.89479 3.15120 3.39249 3.86270 4.00858 4.08384 4.27127 4.38425 4.50845 4.64543 4.72959 4.75932 4.88725 5.04786 5.11366 5.37687 5.45159 5.57631 5.71243 5.80688 5.84240 6.00997 6.27852 6.33502 6.56164 6.85428 6.95295 7.41125 8.94414 Molecular weight = 231.10amu Principal moments of inertia in cm(-1) A = 0.027006 B = 0.007331 C = 0.006343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.565388 B = 3818.612753 C = 4412.935512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.489 5.489 3 C 0.030 3.970 4 C -0.157 4.157 5 C 0.094 3.906 6 C -0.520 4.520 7 H 0.048 0.952 8 C 0.004 3.996 9 N -0.932 5.932 10 Si 0.962 3.038 11 H -0.270 1.270 12 H -0.280 1.280 13 H -0.269 1.269 14 C -0.143 4.143 15 C -0.063 4.063 16 C -0.179 4.179 17 C 0.122 3.878 18 O -0.501 6.501 19 C -0.159 4.159 20 C 0.100 3.900 21 H 0.079 0.921 22 H 0.093 0.907 23 H 0.098 0.902 24 H 0.183 0.817 25 H 0.005 0.995 26 H -0.006 1.006 27 H 0.264 0.736 28 H 0.110 0.890 29 H 0.142 0.858 30 H 0.409 0.591 31 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.856 -11.051 -0.782 16.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.173 5.173 3 C -0.094 4.094 4 C -0.163 4.163 5 C 0.056 3.944 6 C -0.558 4.558 7 H 0.067 0.933 8 C -0.193 4.193 9 N -0.572 5.572 10 Si 0.786 3.214 11 H -0.195 1.195 12 H -0.205 1.205 13 H -0.194 1.194 14 C -0.148 4.148 15 C -0.082 4.082 16 C -0.199 4.199 17 C 0.076 3.924 18 O -0.313 6.313 19 C -0.180 4.180 20 C -0.008 4.008 21 H 0.098 0.902 22 H 0.112 0.888 23 H 0.116 0.884 24 H 0.200 0.800 25 H 0.023 0.977 26 H 0.012 0.988 27 H 0.073 0.927 28 H 0.129 0.871 29 H 0.160 0.840 30 H 0.268 0.732 31 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -13.095 -10.832 -0.138 16.995 hybrid contribution 0.801 0.538 -1.119 1.477 sum -12.294 -10.294 -1.256 16.084 Atomic orbital electron populations 1.22191 0.74633 1.05519 1.04030 1.43943 1.07059 1.02969 1.63349 1.21747 0.89484 0.91734 1.06389 1.20945 0.95312 0.92378 1.07709 1.17356 0.89778 0.91581 0.95676 1.21394 1.14101 1.27209 0.93100 0.93328 1.25885 0.96541 0.95486 1.01422 1.70077 1.22497 1.31740 1.32931 0.85500 0.77502 0.78706 0.79663 1.19514 1.20527 1.19398 1.19526 0.93520 0.93551 1.08212 1.20287 0.98132 0.92427 0.97355 1.20957 0.96976 0.95010 1.06913 1.17884 0.90839 0.83292 1.00343 1.84756 1.93217 1.18074 1.35280 1.20231 1.00413 0.88237 1.09154 1.18184 0.89668 0.88978 1.03948 0.90206 0.88843 0.88365 0.80024 0.97654 0.98764 0.92682 0.87146 0.83993 0.73244 0.83410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.46 11.03 127.77 1.41 2.87 16 2 N -0.49 -15.60 3.18 -539.21 -1.72 -17.31 16 3 C 0.03 1.13 11.21 82.97 0.93 2.06 16 4 C -0.16 -7.38 5.51 -18.62 -0.10 -7.48 16 5 C 0.09 5.22 5.50 29.10 0.16 5.38 16 6 C -0.52 -30.58 9.09 25.60 0.23 -30.35 16 7 H 0.05 2.85 7.74 -2.91 -0.02 2.83 16 8 C 0.00 0.25 5.46 84.66 0.46 0.71 16 9 N -0.93 -57.13 13.29 21.45 0.28 -56.84 16 10 Si 0.96 45.11 29.54 68.60 2.03 47.14 16 11 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 12 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 13 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 14 C -0.14 -6.19 6.35 -20.17 -0.13 -6.31 16 15 C -0.06 -2.55 10.05 22.22 0.22 -2.33 16 16 C -0.18 -5.83 9.91 22.13 0.22 -5.62 16 17 C 0.12 3.56 6.69 22.51 0.15 3.71 16 18 O -0.50 -11.37 13.49 -92.91 -1.25 -12.63 16 19 C -0.16 -4.68 9.89 22.47 0.22 -4.45 16 20 C 0.10 3.57 6.81 39.02 0.27 3.83 16 21 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 22 H 0.09 1.43 8.10 -2.39 -0.02 1.41 16 23 H 0.10 1.52 8.14 -2.38 -0.02 1.51 16 24 H 0.18 5.98 8.06 -2.91 -0.02 5.95 16 25 H 0.01 0.30 8.14 -2.38 -0.02 0.28 16 26 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 27 H 0.26 15.17 8.31 -92.71 -0.77 14.39 16 28 H 0.11 4.69 8.06 -2.91 -0.02 4.67 16 29 H 0.14 3.91 8.06 -2.91 -0.02 3.89 16 30 H 0.41 4.98 9.06 -74.06 -0.67 4.31 16 31 H 0.15 3.34 8.06 -2.91 -0.02 3.32 16 Total: -1.00 -73.09 276.31 3.85 -69.24 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: 0.47 Total: 8.39 kcal Atomic # 6 Polarization: -42.03 SS G_CDS: 4.04 Total: -37.98 kcal Atomic # 7 Polarization: -72.72 SS G_CDS: -1.43 Total: -74.16 kcal Atomic # 8 Polarization: -11.37 SS G_CDS: -1.25 Total: -12.63 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -73.09 3.85 -69.24 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259556021.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.095 kcal (2) G-P(sol) polarization free energy of solvation -73.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds