Wall clock time and date at job start Mon Mar 30 2020 04:54:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36944 * 122.48610 * 2 1 4 4 C 1.39925 * 124.82791 * 359.97438 * 3 2 1 5 5 H 1.08005 * 119.99896 * 0.02562 * 4 3 2 6 6 C 1.40186 * 120.00296 * 179.72622 * 4 3 2 7 7 N 1.30757 * 119.99793 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 120.00097 * 179.97438 * 6 4 3 9 9 H 1.48493 * 109.47004 * 60.00533 * 8 6 4 10 10 H 1.48505 * 109.46860 * 180.02562 * 8 6 4 11 11 H 1.48491 * 109.47090 * 299.99819 * 8 6 4 12 12 S 1.75457 * 110.34465 * 180.26534 * 3 2 1 13 13 C 1.75976 * 91.78591 * 359.67890 * 12 3 2 14 14 C 1.39645 * 130.26192 * 180.02562 * 13 12 3 15 15 C 1.37663 * 120.27912 * 180.25373 * 14 13 12 16 16 C 1.38972 * 120.23753 * 0.06114 * 15 14 13 17 17 C 1.50701 * 119.67419 * 179.97438 * 16 15 14 18 18 C 1.35921 * 120.65334 * 359.95761 * 16 15 14 19 19 C 1.39792 * 122.49026 * 180.02562 * 2 1 3 20 20 H 1.09000 * 109.47039 * 89.97679 * 1 2 3 21 21 H 1.08998 * 109.47184 * 209.97920 * 1 2 3 22 22 H 1.09003 * 109.47094 * 329.97495 * 1 2 3 23 23 H 0.97004 * 120.00354 * 179.97438 * 7 6 4 24 24 H 1.07998 * 119.86335 * 0.28843 * 14 13 12 25 25 H 1.08000 * 119.88221 * 180.02562 * 15 14 13 26 26 H 1.09000 * 109.47369 * 269.97398 * 17 16 15 27 27 H 1.09001 * 109.47167 * 29.97944 * 17 16 15 28 28 H 1.09005 * 109.47179 * 149.97864 * 17 16 15 29 29 H 1.07997 * 119.76319 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2425 1.1552 0.0000 4 6 1.7028 2.4461 -0.0005 5 1 0.6316 2.5836 -0.0005 6 6 2.5525 3.5611 0.0053 7 7 3.8495 3.3947 0.0108 8 14 1.8320 5.2846 0.0039 9 1 0.9892 5.4696 1.2124 10 1 2.9329 6.2813 0.0103 11 1 1.0016 5.4729 -1.2126 12 16 3.9578 0.7861 -0.0076 13 6 3.6415 -0.9450 -0.0008 14 6 4.5276 -2.0243 -0.0016 15 6 4.0491 -3.3151 -0.0007 16 6 2.6801 -3.5540 -0.0003 17 6 2.1702 -4.9722 0.0002 18 6 1.7964 -2.5213 0.0002 19 6 2.2579 -1.1791 -0.0005 20 1 -0.3633 0.0004 -1.0277 21 1 -0.3633 -0.8902 0.5135 22 1 -0.3633 0.8898 0.5142 23 1 4.4375 4.1661 0.0144 24 1 5.5927 -1.8457 -0.0024 25 1 4.7402 -4.1451 -0.0009 26 1 2.0466 -5.3142 -1.0274 27 1 2.8852 -5.6152 0.5136 28 1 1.2101 -5.0130 0.5147 29 1 0.7355 -2.7235 0.0009 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261263713.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:49 Heat of formation + Delta-G solvation = -1.319761 kcal Electronic energy + Delta-G solvation = -13418.117726 eV Core-core repulsion = 11202.545273 eV Total energy + Delta-G solvation = -2215.572453 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 232.062 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.37253 -35.42787 -33.68472 -31.34953 -29.23187 -27.64104 -26.47262 -24.43287 -21.58912 -20.59352 -18.33132 -17.42861 -16.04895 -15.32889 -14.30553 -14.12745 -13.48637 -13.25318 -12.94478 -12.62480 -12.60257 -11.86678 -11.68375 -11.59635 -11.44141 -11.29616 -11.27633 -10.78501 -10.40519 -10.15293 -9.95512 -9.69579 -9.13706 -9.01553 -8.24889 -7.31886 -7.15886 -6.26738 -4.62215 2.12635 2.45178 2.84121 2.84704 2.88707 3.33234 3.56728 3.58928 3.89565 4.65425 5.05987 5.64825 5.66163 5.98121 6.06660 6.11750 6.28550 6.43364 6.49873 6.66154 6.74951 6.77923 6.82401 7.03671 7.19344 7.26907 7.35940 7.57928 7.65237 7.80245 7.95427 8.14866 8.38974 8.47779 9.66839 Molecular weight = 232.06amu Principal moments of inertia in cm(-1) A = 0.047755 B = 0.007801 C = 0.006738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.181947 B = 3588.538017 C = 4154.262051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 C -0.340 4.340 3 C 0.060 3.940 4 C -0.382 4.382 5 H 0.100 0.900 6 C 0.053 3.947 7 N -0.776 5.776 8 Si 0.937 3.063 9 H -0.259 1.259 10 H -0.273 1.273 11 H -0.259 1.259 12 S 0.130 5.870 13 C -0.268 4.268 14 C -0.052 4.052 15 C -0.196 4.196 16 C -0.083 4.083 17 C -0.104 4.104 18 C -0.150 4.150 19 C 0.027 3.973 20 H 0.030 0.970 21 H 0.033 0.967 22 H 0.044 0.956 23 H 0.301 0.699 24 H 0.100 0.900 25 H 0.101 0.899 26 H 0.058 0.942 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.913 -2.562 0.015 2.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.347 4.347 3 C -0.060 4.060 4 C -0.416 4.416 5 H 0.118 0.882 6 C -0.168 4.168 7 N -0.403 5.403 8 Si 0.760 3.240 9 H -0.184 1.184 10 H -0.198 1.198 11 H -0.183 1.183 12 S 0.392 5.608 13 C -0.382 4.382 14 C -0.074 4.074 15 C -0.217 4.217 16 C -0.085 4.085 17 C -0.160 4.160 18 C -0.170 4.170 19 C 0.019 3.981 20 H 0.049 0.951 21 H 0.052 0.948 22 H 0.063 0.937 23 H 0.114 0.886 24 H 0.118 0.882 25 H 0.119 0.881 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 0.610 -1.538 0.009 1.654 hybrid contribution -1.416 -0.141 -0.004 1.423 sum -0.806 -1.679 0.006 1.862 Atomic orbital electron populations 1.19805 0.92485 0.99285 0.98659 1.18330 0.94881 0.90238 1.31243 1.21246 0.94275 0.95757 0.94692 1.19311 0.95690 0.88555 1.38023 0.88221 1.26321 0.94501 1.03547 0.92469 1.68652 1.04073 1.34773 1.32770 0.85826 0.79512 0.78182 0.80457 1.18352 1.19752 1.18344 1.84759 1.06517 0.90740 1.78757 1.23636 0.96863 1.01774 1.15951 1.20158 0.97006 0.91353 0.98885 1.20320 0.94215 0.95414 1.11707 1.19039 0.93624 0.94317 1.01531 1.20682 1.00424 0.93880 1.01058 1.20369 0.97675 0.91203 1.07725 1.17830 0.91689 0.92850 0.95752 0.95109 0.94762 0.93679 0.88596 0.88169 0.88050 0.92370 0.92595 0.92573 0.88169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.95 9.59 36.00 0.35 -0.60 15 2 C -0.34 -8.63 5.95 -104.51 -0.62 -9.25 15 3 C 0.06 1.56 6.11 -39.42 -0.24 1.32 15 4 C -0.38 -9.45 8.83 -38.22 -0.34 -9.79 15 5 H 0.10 2.32 6.67 -52.48 -0.35 1.97 15 6 C 0.05 1.21 5.50 -17.28 -0.10 1.12 15 7 N -0.78 -18.27 10.58 55.56 0.59 -17.68 15 8 Si 0.94 17.00 29.56 -169.99 -5.03 11.98 15 9 H -0.26 -4.65 7.11 56.52 0.40 -4.25 15 10 H -0.27 -4.79 7.11 56.52 0.40 -4.39 15 11 H -0.26 -4.66 7.11 56.52 0.40 -4.26 15 12 S 0.13 3.27 20.13 -107.50 -2.16 1.11 15 13 C -0.27 -6.63 6.47 -38.27 -0.25 -6.88 15 14 C -0.05 -1.14 10.07 -39.27 -0.40 -1.53 15 15 C -0.20 -3.95 9.68 -39.52 -0.38 -4.34 15 16 C -0.08 -1.66 5.83 -105.18 -0.61 -2.27 15 17 C -0.10 -1.59 9.99 36.01 0.36 -1.23 15 18 C -0.15 -3.33 9.24 -39.00 -0.36 -3.69 15 19 C 0.03 0.67 5.84 -107.12 -0.63 0.04 15 20 H 0.03 0.64 8.14 -51.93 -0.42 0.21 15 21 H 0.03 0.68 7.33 -51.93 -0.38 0.30 15 22 H 0.04 0.94 6.89 -51.93 -0.36 0.58 15 23 H 0.30 6.35 8.30 -40.82 -0.34 6.01 15 24 H 0.10 1.98 8.06 -52.49 -0.42 1.55 15 25 H 0.10 1.74 8.06 -52.49 -0.42 1.32 15 26 H 0.06 0.82 8.14 -51.93 -0.42 0.39 15 27 H 0.06 0.76 8.08 -51.93 -0.42 0.34 15 28 H 0.06 0.80 8.07 -51.93 -0.42 0.38 15 29 H 0.10 2.05 7.40 -52.49 -0.39 1.66 15 LS Contribution 259.83 15.07 3.92 3.92 Total: -1.00 -26.90 259.83 -9.04 -35.94 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: -3.14 Total: 1.83 kcal Atomic # 6 Polarization: -33.88 SS G_CDS: -3.21 Total: -37.09 kcal Atomic # 7 Polarization: -18.27 SS G_CDS: 0.59 Total: -17.68 kcal Atomic # 14 Polarization: 17.00 SS G_CDS: -5.03 Total: 11.98 kcal Atomic # 16 Polarization: 3.27 SS G_CDS: -2.16 Total: 1.11 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -26.90 -9.04 -35.94 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261263713.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.619 kcal (2) G-P(sol) polarization free energy of solvation -26.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds