Wall clock time and date at job start Mon Mar 30 2020 04:54:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36944 * 122.48610 * 2 1 4 4 C 1.39925 * 124.82791 * 359.97438 * 3 2 1 5 5 H 1.08005 * 119.99896 * 0.02562 * 4 3 2 6 6 C 1.40186 * 120.00296 * 179.72622 * 4 3 2 7 7 N 1.30757 * 119.99793 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 120.00097 * 179.97438 * 6 4 3 9 9 H 1.48493 * 109.47004 * 60.00533 * 8 6 4 10 10 H 1.48505 * 109.46860 * 180.02562 * 8 6 4 11 11 H 1.48491 * 109.47090 * 299.99819 * 8 6 4 12 12 S 1.75457 * 110.34465 * 180.26534 * 3 2 1 13 13 C 1.75976 * 91.78591 * 359.67890 * 12 3 2 14 14 C 1.39645 * 130.26192 * 180.02562 * 13 12 3 15 15 C 1.37663 * 120.27912 * 180.25373 * 14 13 12 16 16 C 1.38972 * 120.23753 * 0.06114 * 15 14 13 17 17 C 1.50701 * 119.67419 * 179.97438 * 16 15 14 18 18 C 1.35921 * 120.65334 * 359.95761 * 16 15 14 19 19 C 1.39792 * 122.49026 * 180.02562 * 2 1 3 20 20 H 1.09000 * 109.47039 * 89.97679 * 1 2 3 21 21 H 1.08998 * 109.47184 * 209.97920 * 1 2 3 22 22 H 1.09003 * 109.47094 * 329.97495 * 1 2 3 23 23 H 0.97004 * 120.00354 * 179.97438 * 7 6 4 24 24 H 1.07998 * 119.86335 * 0.28843 * 14 13 12 25 25 H 1.08000 * 119.88221 * 180.02562 * 15 14 13 26 26 H 1.09000 * 109.47369 * 269.97398 * 17 16 15 27 27 H 1.09001 * 109.47167 * 29.97944 * 17 16 15 28 28 H 1.09005 * 109.47179 * 149.97864 * 17 16 15 29 29 H 1.07997 * 119.76319 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2425 1.1552 0.0000 4 6 1.7028 2.4461 -0.0005 5 1 0.6316 2.5836 -0.0005 6 6 2.5525 3.5611 0.0053 7 7 3.8495 3.3947 0.0108 8 14 1.8320 5.2846 0.0039 9 1 0.9892 5.4696 1.2124 10 1 2.9329 6.2813 0.0103 11 1 1.0016 5.4729 -1.2126 12 16 3.9578 0.7861 -0.0076 13 6 3.6415 -0.9450 -0.0008 14 6 4.5276 -2.0243 -0.0016 15 6 4.0491 -3.3151 -0.0007 16 6 2.6801 -3.5540 -0.0003 17 6 2.1702 -4.9722 0.0002 18 6 1.7964 -2.5213 0.0002 19 6 2.2579 -1.1791 -0.0005 20 1 -0.3633 0.0004 -1.0277 21 1 -0.3633 -0.8902 0.5135 22 1 -0.3633 0.8898 0.5142 23 1 4.4375 4.1661 0.0144 24 1 5.5927 -1.8457 -0.0024 25 1 4.7402 -4.1451 -0.0009 26 1 2.0466 -5.3142 -1.0274 27 1 2.8852 -5.6152 0.5136 28 1 1.2101 -5.0130 0.5147 29 1 0.7355 -2.7235 0.0009 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261263713.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:49 Heat of formation + Delta-G solvation = -13.664091 kcal Electronic energy + Delta-G solvation = -13418.653017 eV Core-core repulsion = 11202.545273 eV Total energy + Delta-G solvation = -2216.107744 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 232.062 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.07702 -37.17107 -35.40694 -32.94302 -30.98954 -29.38885 -28.00944 -26.12519 -23.32873 -22.26133 -20.08104 -19.24447 -17.81320 -16.95016 -16.00004 -15.76009 -15.11532 -14.82479 -14.55874 -14.32753 -14.09954 -13.47297 -13.35262 -13.17932 -12.98832 -12.90714 -12.74405 -12.30728 -12.03890 -11.76778 -11.65047 -11.42739 -10.88953 -10.84205 -9.98928 -9.11689 -8.88110 -8.13134 -6.46514 0.37571 0.74134 1.34793 1.35002 1.48946 1.51112 1.87279 1.95112 2.15162 2.89333 3.28463 4.15022 4.20934 4.47753 4.67732 4.73426 4.82948 4.90750 4.92584 4.98685 5.07934 5.08529 5.14032 5.38937 5.47638 5.55971 5.62921 5.82456 5.95197 6.02673 6.17568 6.42436 6.60254 6.65029 7.97911 Molecular weight = 232.06amu Principal moments of inertia in cm(-1) A = 0.047755 B = 0.007801 C = 0.006738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.181947 B = 3588.538017 C = 4154.262051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 C -0.370 4.370 3 C 0.029 3.971 4 C -0.411 4.411 5 H 0.105 0.895 6 C 0.016 3.984 7 N -0.802 5.802 8 Si 1.011 2.989 9 H -0.254 1.254 10 H -0.261 1.261 11 H -0.255 1.255 12 S 0.100 5.900 13 C -0.295 4.295 14 C -0.067 4.067 15 C -0.187 4.187 16 C -0.080 4.080 17 C -0.100 4.100 18 C -0.166 4.166 19 C -0.002 4.002 20 H 0.035 0.965 21 H 0.046 0.954 22 H 0.045 0.955 23 H 0.310 0.690 24 H 0.117 0.883 25 H 0.139 0.861 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.067 0.933 29 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.277 -3.601 0.029 3.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.377 4.377 3 C -0.090 4.090 4 C -0.444 4.444 5 H 0.123 0.877 6 C -0.203 4.203 7 N -0.428 5.428 8 Si 0.829 3.171 9 H -0.178 1.178 10 H -0.185 1.185 11 H -0.179 1.179 12 S 0.361 5.639 13 C -0.409 4.409 14 C -0.089 4.089 15 C -0.208 4.208 16 C -0.083 4.083 17 C -0.157 4.157 18 C -0.186 4.186 19 C -0.010 4.010 20 H 0.054 0.946 21 H 0.065 0.935 22 H 0.064 0.936 23 H 0.124 0.876 24 H 0.134 0.866 25 H 0.157 0.843 26 H 0.094 0.906 27 H 0.097 0.903 28 H 0.086 0.914 29 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 0.252 -2.606 0.023 2.618 hybrid contribution -1.236 0.001 -0.010 1.236 sum -0.985 -2.605 0.013 2.785 Atomic orbital electron populations 1.19760 0.90684 0.99919 0.99094 1.18807 0.96538 0.90439 1.31917 1.21625 0.94540 0.96877 0.95917 1.19639 0.96399 0.89051 1.39322 0.87687 1.27298 0.94591 1.07218 0.91183 1.68708 1.05281 1.36357 1.32470 0.84766 0.78941 0.72840 0.80555 1.17824 1.18504 1.17854 1.84534 1.07211 0.92327 1.79790 1.23876 0.97656 1.01777 1.17606 1.20515 0.97709 0.91660 0.99063 1.20830 0.95182 0.95607 1.09141 1.19628 0.93412 0.96386 0.98833 1.20744 1.01473 0.90760 1.02696 1.20647 0.98975 0.90656 1.08313 1.18203 0.91987 0.94108 0.96677 0.94649 0.93479 0.93556 0.87646 0.86550 0.84296 0.90617 0.90317 0.91426 0.86877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -1.58 9.59 71.24 0.68 -0.89 15 2 C -0.37 -19.31 5.95 -19.79 -0.12 -19.42 15 3 C 0.03 1.60 6.11 22.37 0.14 1.74 15 4 C -0.41 -20.90 8.83 23.15 0.20 -20.70 15 5 H 0.11 5.02 6.67 -2.91 -0.02 5.00 15 6 C 0.02 0.72 5.50 85.33 0.47 1.19 15 7 N -0.80 -38.50 10.58 21.87 0.23 -38.27 15 8 Si 1.01 34.42 29.56 68.60 2.03 36.45 15 9 H -0.25 -8.40 7.11 99.48 0.71 -7.70 15 10 H -0.26 -8.31 7.11 99.48 0.71 -7.60 15 11 H -0.25 -8.43 7.11 99.48 0.71 -7.72 15 12 S 0.10 5.24 20.13 -56.49 -1.14 4.10 15 13 C -0.29 -14.89 6.47 23.12 0.15 -14.74 15 14 C -0.07 -2.91 10.07 22.47 0.23 -2.68 15 15 C -0.19 -7.04 9.68 22.31 0.22 -6.82 15 16 C -0.08 -3.00 5.83 -20.23 -0.12 -3.12 15 17 C -0.10 -2.63 9.99 71.24 0.71 -1.92 15 18 C -0.17 -7.21 9.24 22.65 0.21 -7.00 15 19 C 0.00 -0.11 5.84 -21.48 -0.13 -0.23 15 20 H 0.03 1.48 8.14 -2.39 -0.02 1.46 15 21 H 0.05 1.88 7.33 -2.39 -0.02 1.87 15 22 H 0.05 1.96 6.89 -2.39 -0.02 1.95 15 23 H 0.31 13.21 8.30 -92.71 -0.77 12.44 15 24 H 0.12 4.51 8.06 -2.91 -0.02 4.48 15 25 H 0.14 4.14 8.06 -2.91 -0.02 4.12 15 26 H 0.08 1.78 8.14 -2.39 -0.02 1.76 15 27 H 0.08 1.74 8.08 -2.39 -0.02 1.72 15 28 H 0.07 1.65 8.07 -2.38 -0.02 1.63 15 29 H 0.11 4.47 7.40 -2.91 -0.02 4.45 15 Total: -1.00 -59.39 259.83 4.92 -54.46 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: 1.15 Total: 17.86 kcal Atomic # 6 Polarization: -77.25 SS G_CDS: 2.65 Total: -74.60 kcal Atomic # 7 Polarization: -38.50 SS G_CDS: 0.23 Total: -38.27 kcal Atomic # 14 Polarization: 34.42 SS G_CDS: 2.03 Total: 36.45 kcal Atomic # 16 Polarization: 5.24 SS G_CDS: -1.14 Total: 4.10 kcal Total: -59.39 4.92 -54.46 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261263713.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.801 kcal (2) G-P(sol) polarization free energy of solvation -59.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds