Wall clock time and date at job start Mon Mar 30 2020 06:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47753 * 2 1 4 4 C 1.52996 * 109.47153 * 239.99723 * 2 1 3 5 5 C 1.50702 * 109.47159 * 175.00123 * 4 2 1 6 6 H 1.08002 * 120.00299 * 0.02562 * 5 4 2 7 7 C 1.37884 * 119.99942 * 179.72211 * 5 4 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 4 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 4 10 10 H 1.48504 * 109.47196 * 60.00645 * 9 7 5 11 11 H 1.48504 * 109.46887 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47679 * 300.00280 * 9 7 5 13 13 N 1.46908 * 109.47004 * 120.00132 * 2 1 3 14 14 C 1.46901 * 110.99611 * 274.99818 * 13 2 1 15 15 H 1.08994 * 110.02325 * 325.69771 * 14 13 2 16 16 C 1.54269 * 110.02865 * 204.30784 * 14 13 2 17 17 C 1.54896 * 104.19696 * 217.10625 * 16 14 13 18 18 C 1.54891 * 102.74677 * 37.94369 * 17 16 14 19 19 C 1.53871 * 110.03246 * 87.09230 * 14 13 2 20 20 F 1.39897 * 110.03314 * 238.56562 * 19 14 13 21 21 F 1.39901 * 110.03346 * 359.97438 * 19 14 13 22 22 H 1.09000 * 109.46774 * 59.99989 * 1 2 3 23 23 H 1.08993 * 109.47136 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47101 * 300.00282 * 1 2 3 25 25 H 1.09004 * 109.47066 * 55.00326 * 4 2 1 26 26 H 1.08994 * 109.47405 * 295.00156 * 4 2 1 27 27 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 28 28 H 1.00903 * 110.99875 * 38.95027 * 13 2 1 29 29 H 1.09001 * 110.48691 * 335.78245 * 16 14 13 30 30 H 1.09001 * 110.48489 * 98.29635 * 16 14 13 31 31 H 1.09000 * 110.75608 * 156.26007 * 17 16 14 32 32 H 1.09001 * 110.75128 * 279.44815 * 17 16 14 33 33 H 1.09000 * 110.48628 * 80.73387 * 18 17 16 34 34 H 1.08998 * 110.48694 * 203.38468 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.6150 -1.3126 6 1 4.0790 -0.0862 -0.5391 7 6 4.2309 -1.1981 -2.3550 8 7 3.5768 -1.8423 -3.2967 9 14 6.0931 -1.0729 -2.4295 10 1 6.6802 -1.6981 -1.2172 11 1 6.5885 -1.7772 -3.6395 12 1 6.4912 0.3564 -2.4915 13 7 2.0196 -0.6926 1.1995 14 6 2.0824 0.2226 2.3469 15 1 2.3523 1.2239 2.0113 16 6 3.1153 -0.2870 3.3733 17 6 2.4834 0.0490 4.7470 18 6 0.9792 -0.2346 4.5098 19 6 0.7239 0.2569 3.0687 20 9 0.2246 1.5635 3.0885 21 9 -0.1822 -0.5929 2.4253 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.6054 -0.2618 -2.1369 26 1 1.7516 -1.7715 -1.2055 27 1 4.0615 -2.2523 -4.0302 28 1 1.4494 -1.4980 1.4101 29 1 3.2558 -1.3630 3.2710 30 1 4.0646 0.2343 3.2501 31 1 2.8814 -0.6025 5.5249 32 1 2.6465 1.0963 5.0013 33 1 0.7749 -1.3022 4.5910 34 1 0.3690 0.3266 5.2174 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709977837.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:05 Heat of formation + Delta-G solvation = -110.237146 kcal Electronic energy + Delta-G solvation = -17488.428657 eV Core-core repulsion = 14477.391069 eV Total energy + Delta-G solvation = -3011.037588 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 233.129 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -48.90330 -46.90628 -37.89460 -35.54122 -32.53480 -30.28301 -27.87911 -27.20025 -25.96065 -22.95924 -21.22087 -20.38450 -19.80919 -17.47464 -17.14073 -16.08883 -16.01534 -14.89405 -14.46420 -14.27696 -14.15882 -13.82063 -13.40782 -13.07317 -12.80057 -12.51314 -12.08819 -11.90419 -11.74210 -11.51723 -11.30798 -11.16721 -10.83724 -10.81351 -10.69215 -10.42472 -10.33640 -10.00980 -9.19672 -8.96485 -8.23089 -7.75622 -5.85275 -3.83229 3.41896 3.45721 3.48685 3.83955 4.02972 4.26751 4.38162 4.58281 4.79929 5.10929 5.20091 5.29460 5.41015 5.50132 5.53162 5.62545 5.77988 5.86270 5.92103 6.06085 6.11344 6.20419 6.31120 6.51216 6.75242 7.05197 7.50559 7.68078 7.98582 8.02495 8.16086 8.61794 9.21565 9.77726 11.26822 Molecular weight = 233.13amu Principal moments of inertia in cm(-1) A = 0.033903 B = 0.007425 C = 0.006478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.698462 B = 3770.026945 C = 4321.343733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.086 3.914 3 H 0.064 0.936 4 C 0.034 3.966 5 C -0.490 4.490 6 H 0.057 0.943 7 C 0.050 3.950 8 N -0.904 5.904 9 Si 0.891 3.109 10 H -0.278 1.278 11 H -0.291 1.291 12 H -0.280 1.280 13 N -0.645 5.645 14 C 0.052 3.948 15 H 0.101 0.899 16 C -0.110 4.110 17 C -0.124 4.124 18 C -0.159 4.159 19 C 0.241 3.759 20 F -0.202 7.202 21 F -0.192 7.192 22 H 0.050 0.950 23 H 0.052 0.948 24 H 0.050 0.950 25 H 0.019 0.981 26 H 0.017 0.983 27 H 0.258 0.742 28 H 0.341 0.659 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.095 0.905 34 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.485 3.483 15.688 16.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.023 4.023 3 H 0.082 0.918 4 C -0.003 4.003 5 C -0.529 4.529 6 H 0.076 0.924 7 C -0.150 4.150 8 N -0.545 5.545 9 Si 0.719 3.281 10 H -0.204 1.204 11 H -0.216 1.216 12 H -0.206 1.206 13 N -0.274 5.274 14 C -0.061 4.061 15 H 0.119 0.881 16 C -0.148 4.148 17 C -0.162 4.162 18 C -0.197 4.197 19 C 0.202 3.798 20 F -0.183 7.183 21 F -0.173 7.173 22 H 0.069 0.931 23 H 0.071 0.929 24 H 0.068 0.932 25 H 0.037 0.963 26 H 0.036 0.964 27 H 0.067 0.933 28 H 0.162 0.838 29 H 0.103 0.897 30 H 0.099 0.901 31 H 0.098 0.902 32 H 0.092 0.908 33 H 0.114 0.886 34 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -3.821 3.455 15.298 16.142 hybrid contribution -0.227 0.158 -0.026 0.278 sum -4.048 3.613 15.272 16.207 Atomic orbital electron populations 1.22855 0.98956 1.01537 1.01131 1.21926 0.90530 0.97915 0.91933 0.91774 1.19100 0.96168 0.95421 0.89626 1.21118 0.91866 1.32874 1.06997 0.92436 1.25015 0.98000 0.95911 0.96042 1.69960 1.35266 1.36809 1.12446 0.86688 0.86398 0.77906 0.77090 1.20394 1.21644 1.20580 1.60721 1.57433 1.07926 1.01355 1.23386 0.89938 1.00172 0.92626 0.88057 1.22372 0.97974 1.03021 0.91395 1.22493 0.93096 1.02237 0.98408 1.23320 0.99308 1.03581 0.93532 1.23023 0.88769 0.73172 0.94801 1.92979 1.89557 1.38479 1.97322 1.92937 1.70297 1.70827 1.83229 0.93059 0.92913 0.93164 0.96323 0.96436 0.93280 0.83771 0.89734 0.90053 0.90202 0.90790 0.88629 0.89594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.47 7.77 37.16 0.29 -3.18 16 2 C 0.09 1.80 2.53 -67.71 -0.17 1.63 16 3 H 0.06 1.37 7.44 -51.93 -0.39 0.98 16 4 C 0.03 0.89 4.65 -27.88 -0.13 0.76 16 5 C -0.49 -13.92 8.84 -34.44 -0.30 -14.22 16 6 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 7 C 0.05 1.45 5.46 -17.82 -0.10 1.35 16 8 N -0.90 -27.70 13.29 55.43 0.74 -26.96 16 9 Si 0.89 22.19 29.54 -169.99 -5.02 17.17 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 12 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 13 N -0.64 -12.08 5.72 -98.57 -0.56 -12.65 16 14 C 0.05 0.79 3.07 -66.59 -0.20 0.59 16 15 H 0.10 1.62 7.32 -51.93 -0.38 1.24 16 16 C -0.11 -1.36 6.54 -25.07 -0.16 -1.53 16 17 C -0.12 -1.19 6.91 -24.73 -0.17 -1.36 16 18 C -0.16 -1.68 6.41 -25.01 -0.16 -1.84 16 19 C 0.24 3.39 1.86 -25.55 -0.05 3.34 16 20 F -0.20 -3.09 16.73 2.25 0.04 -3.05 16 21 F -0.19 -3.01 11.84 2.25 0.03 -2.98 16 22 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 23 H 0.05 0.98 8.04 -51.93 -0.42 0.56 16 24 H 0.05 0.89 5.11 -51.93 -0.27 0.62 16 25 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 28 H 0.34 6.19 7.13 -39.29 -0.28 5.91 16 29 H 0.08 1.09 8.05 -51.93 -0.42 0.68 16 30 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.10 0.93 8.12 -51.93 -0.42 0.51 16 34 H 0.09 0.81 8.11 -51.93 -0.42 0.39 16 LS Contribution 276.69 15.07 4.17 4.17 Total: -1.00 -30.65 276.69 -6.84 -37.50 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: -5.07 Total: 1.26 kcal Atomic # 6 Polarization: -13.30 SS G_CDS: -1.16 Total: -14.46 kcal Atomic # 7 Polarization: -39.78 SS G_CDS: 0.17 Total: -39.61 kcal Atomic # 9 Polarization: -6.10 SS G_CDS: 0.06 Total: -6.03 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -30.65 -6.84 -37.50 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709977837.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.740 kcal (2) G-P(sol) polarization free energy of solvation -30.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds