Wall clock time and date at job start Mon Mar 30 2020 06:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47753 * 2 1 4 4 C 1.52996 * 109.47153 * 239.99723 * 2 1 3 5 5 C 1.50702 * 109.47159 * 175.00123 * 4 2 1 6 6 H 1.08002 * 120.00299 * 0.02562 * 5 4 2 7 7 C 1.37884 * 119.99942 * 179.72211 * 5 4 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 4 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 4 10 10 H 1.48504 * 109.47196 * 60.00645 * 9 7 5 11 11 H 1.48504 * 109.46887 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47679 * 300.00280 * 9 7 5 13 13 N 1.46908 * 109.47004 * 120.00132 * 2 1 3 14 14 C 1.46901 * 110.99611 * 274.99818 * 13 2 1 15 15 H 1.08994 * 110.02325 * 325.69771 * 14 13 2 16 16 C 1.54269 * 110.02865 * 204.30784 * 14 13 2 17 17 C 1.54896 * 104.19696 * 217.10625 * 16 14 13 18 18 C 1.54891 * 102.74677 * 37.94369 * 17 16 14 19 19 C 1.53871 * 110.03246 * 87.09230 * 14 13 2 20 20 F 1.39897 * 110.03314 * 238.56562 * 19 14 13 21 21 F 1.39901 * 110.03346 * 359.97438 * 19 14 13 22 22 H 1.09000 * 109.46774 * 59.99989 * 1 2 3 23 23 H 1.08993 * 109.47136 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47101 * 300.00282 * 1 2 3 25 25 H 1.09004 * 109.47066 * 55.00326 * 4 2 1 26 26 H 1.08994 * 109.47405 * 295.00156 * 4 2 1 27 27 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 28 28 H 1.00903 * 110.99875 * 38.95027 * 13 2 1 29 29 H 1.09001 * 110.48691 * 335.78245 * 16 14 13 30 30 H 1.09001 * 110.48489 * 98.29635 * 16 14 13 31 31 H 1.09000 * 110.75608 * 156.26007 * 17 16 14 32 32 H 1.09001 * 110.75128 * 279.44815 * 17 16 14 33 33 H 1.09000 * 110.48628 * 80.73387 * 18 17 16 34 34 H 1.08998 * 110.48694 * 203.38468 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.6150 -1.3126 6 1 4.0790 -0.0862 -0.5391 7 6 4.2309 -1.1981 -2.3550 8 7 3.5768 -1.8423 -3.2967 9 14 6.0931 -1.0729 -2.4295 10 1 6.6802 -1.6981 -1.2172 11 1 6.5885 -1.7772 -3.6395 12 1 6.4912 0.3564 -2.4915 13 7 2.0196 -0.6926 1.1995 14 6 2.0824 0.2226 2.3469 15 1 2.3523 1.2239 2.0113 16 6 3.1153 -0.2870 3.3733 17 6 2.4834 0.0490 4.7470 18 6 0.9792 -0.2346 4.5098 19 6 0.7239 0.2569 3.0687 20 9 0.2246 1.5635 3.0885 21 9 -0.1822 -0.5929 2.4253 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.6054 -0.2618 -2.1369 26 1 1.7516 -1.7715 -1.2055 27 1 4.0615 -2.2523 -4.0302 28 1 1.4494 -1.4980 1.4101 29 1 3.2558 -1.3630 3.2710 30 1 4.0646 0.2343 3.2501 31 1 2.8814 -0.6025 5.5249 32 1 2.6465 1.0963 5.0013 33 1 0.7749 -1.3022 4.5910 34 1 0.3690 0.3266 5.2174 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709977837.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:05 Heat of formation + Delta-G solvation = -129.416106 kcal Electronic energy + Delta-G solvation = -17489.260319 eV Core-core repulsion = 14477.391069 eV Total energy + Delta-G solvation = -3011.869250 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 233.129 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -50.06627 -48.07902 -39.14672 -36.97659 -34.62527 -31.79702 -29.20967 -28.83205 -27.19760 -25.02336 -22.16946 -21.59167 -21.46814 -18.67031 -18.51853 -18.09306 -17.13989 -16.50663 -16.18781 -15.43158 -15.27178 -15.20657 -14.72210 -14.40970 -14.24383 -14.01177 -13.81953 -13.28033 -13.19062 -12.89440 -12.80275 -12.57684 -12.48678 -12.15852 -12.11337 -11.92927 -11.73712 -11.59386 -11.11287 -11.02670 -10.48508 -9.24728 -8.09338 -6.15221 1.42655 1.46048 1.53429 2.48147 2.77686 2.97598 3.12142 3.26142 3.31288 3.65375 4.11532 4.17078 4.29533 4.31375 4.37194 4.42847 4.51337 4.60505 4.81974 4.86462 4.97070 5.10582 5.15497 5.20662 5.24149 5.36062 5.48430 5.63086 5.88514 6.22278 6.39347 6.54664 6.97947 7.50479 9.02931 Molecular weight = 233.13amu Principal moments of inertia in cm(-1) A = 0.033903 B = 0.007425 C = 0.006478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.698462 B = 3770.026945 C = 4321.343733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.098 3.902 3 H 0.058 0.942 4 C 0.040 3.960 5 C -0.501 4.501 6 H 0.060 0.940 7 C -0.008 4.008 8 N -0.942 5.942 9 Si 0.962 3.038 10 H -0.268 1.268 11 H -0.288 1.288 12 H -0.270 1.270 13 N -0.659 5.659 14 C 0.047 3.953 15 H 0.090 0.910 16 C -0.108 4.108 17 C -0.112 4.112 18 C -0.151 4.151 19 C 0.235 3.765 20 F -0.210 7.210 21 F -0.203 7.203 22 H 0.049 0.951 23 H 0.051 0.949 24 H 0.063 0.937 25 H -0.009 1.009 26 H -0.009 1.009 27 H 0.259 0.741 28 H 0.343 0.657 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.106 0.894 32 H 0.084 0.916 33 H 0.106 0.894 34 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.614 3.859 17.895 18.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.012 4.012 3 H 0.076 0.924 4 C 0.003 3.997 5 C -0.540 4.540 6 H 0.078 0.922 7 C -0.204 4.204 8 N -0.584 5.584 9 Si 0.787 3.213 10 H -0.193 1.193 11 H -0.214 1.214 12 H -0.195 1.195 13 N -0.289 5.289 14 C -0.066 4.066 15 H 0.108 0.892 16 C -0.146 4.146 17 C -0.149 4.149 18 C -0.189 4.189 19 C 0.196 3.804 20 F -0.191 7.191 21 F -0.184 7.184 22 H 0.068 0.932 23 H 0.070 0.930 24 H 0.082 0.918 25 H 0.009 0.991 26 H 0.009 0.991 27 H 0.068 0.932 28 H 0.164 0.836 29 H 0.097 0.903 30 H 0.101 0.899 31 H 0.125 0.875 32 H 0.102 0.898 33 H 0.124 0.876 34 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -2.955 3.844 17.532 18.190 hybrid contribution -0.530 0.056 -0.731 0.904 sum -3.485 3.899 16.801 17.596 Atomic orbital electron populations 1.22724 0.97193 1.01645 1.01702 1.21568 0.91829 0.96762 0.91046 0.92366 1.18960 0.95448 0.94084 0.91255 1.21448 0.93035 1.32543 1.06956 0.92221 1.25928 1.03296 0.95529 0.95651 1.70105 1.37328 1.37828 1.13159 0.85555 0.80064 0.78340 0.77338 1.19326 1.21372 1.19515 1.60583 1.57610 1.08724 1.01976 1.23483 0.91917 0.98972 0.92215 0.89176 1.22367 0.97346 1.02551 0.92305 1.22491 0.91884 1.03527 0.97037 1.23358 1.00272 1.04368 0.90896 1.23272 0.87456 0.72826 0.96808 1.92964 1.89575 1.39148 1.97448 1.92909 1.70630 1.71121 1.83778 0.93178 0.93029 0.91788 0.99092 0.99091 0.93237 0.83571 0.90253 0.89913 0.87549 0.89770 0.87569 0.87845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.52 7.77 71.98 0.56 -5.96 16 2 C 0.10 4.15 2.53 44.91 0.11 4.27 16 3 H 0.06 2.53 7.44 -2.39 -0.02 2.51 16 4 C 0.04 2.16 4.65 29.85 0.14 2.30 16 5 C -0.50 -28.91 8.84 25.60 0.23 -28.69 16 6 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 7 C -0.01 -0.48 5.46 84.66 0.46 -0.02 16 8 N -0.94 -58.87 13.29 21.45 0.28 -58.58 16 9 Si 0.96 45.58 29.54 68.60 2.03 47.60 16 10 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 11 H -0.29 -13.44 7.11 99.48 0.71 -12.74 16 12 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 13 N -0.66 -24.66 5.72 -465.77 -2.66 -27.33 16 14 C 0.05 1.37 3.07 45.64 0.14 1.51 16 15 H 0.09 2.83 7.32 -2.39 -0.02 2.81 16 16 C -0.11 -2.45 6.54 31.67 0.21 -2.24 16 17 C -0.11 -1.73 6.91 31.89 0.22 -1.51 16 18 C -0.15 -2.69 6.41 31.71 0.20 -2.49 16 19 C 0.23 6.19 1.86 31.36 0.06 6.25 16 20 F -0.21 -6.07 16.73 44.97 0.75 -5.32 16 21 F -0.20 -6.13 11.84 44.97 0.53 -5.59 16 22 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 23 H 0.05 1.92 8.04 -2.39 -0.02 1.90 16 24 H 0.06 2.22 5.11 -2.39 -0.01 2.21 16 25 H -0.01 -0.54 8.14 -2.38 -0.02 -0.56 16 26 H -0.01 -0.55 8.14 -2.39 -0.02 -0.56 16 27 H 0.26 15.32 8.31 -92.70 -0.77 14.55 16 28 H 0.34 12.44 7.13 -89.69 -0.64 11.81 16 29 H 0.08 1.90 8.05 -2.39 -0.02 1.88 16 30 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.11 1.71 8.12 -2.39 -0.02 1.69 16 34 H 0.10 1.54 8.11 -2.39 -0.02 1.52 16 Total: -1.00 -66.27 276.69 3.71 -62.56 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: 0.45 Total: 13.23 kcal Atomic # 6 Polarization: -28.91 SS G_CDS: 2.33 Total: -26.58 kcal Atomic # 7 Polarization: -83.53 SS G_CDS: -2.38 Total: -85.91 kcal Atomic # 9 Polarization: -12.19 SS G_CDS: 1.28 Total: -10.91 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.60 kcal Total: -66.27 3.71 -62.56 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709977837.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.852 kcal (2) G-P(sol) polarization free energy of solvation -66.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds