Wall clock time and date at job start Mon Mar 30 2020 05:08:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38253 * 120.00130 * 2 1 4 4 C 1.38213 * 120.00059 * 179.97438 * 3 2 1 5 5 C 1.38254 * 120.00068 * 359.97438 * 4 3 2 6 6 C 1.38217 * 119.99824 * 359.80968 * 5 4 3 7 7 C 1.38213 * 119.99941 * 180.02562 * 2 1 3 8 8 C 1.50710 * 119.99942 * 359.97438 * 7 2 1 9 9 H 1.09003 * 109.46844 * 325.00835 * 8 7 2 10 10 C 1.52997 * 109.46781 * 85.00240 * 8 7 2 11 11 C 1.50706 * 109.47367 * 61.10828 * 10 8 7 12 12 H 1.07998 * 119.99308 * 5.13666 * 11 10 8 13 13 C 1.37873 * 119.99958 * 185.13757 * 11 10 8 14 14 N 1.31516 * 119.99738 * 180.02562 * 13 11 10 15 15 Si 1.86800 * 120.00244 * 359.97438 * 13 11 10 16 16 H 1.48500 * 109.46710 * 90.00270 * 15 13 11 17 17 H 1.48498 * 109.47277 * 210.00002 * 15 13 11 18 18 H 1.48495 * 109.47237 * 330.00494 * 15 13 11 19 19 N 1.46892 * 109.47033 * 205.00322 * 8 7 2 20 20 C 1.46899 * 111.00515 * 67.18265 * 19 8 7 21 21 C 1.46902 * 110.99870 * 191.13995 * 19 8 7 22 22 H 1.09003 * 109.47024 * 269.98100 * 1 2 3 23 23 H 1.08998 * 109.46612 * 29.98043 * 1 2 3 24 24 H 1.08994 * 109.47153 * 149.97720 * 1 2 3 25 25 H 1.08007 * 119.99945 * 359.97438 * 3 2 1 26 26 H 1.07997 * 119.99792 * 180.02562 * 4 3 2 27 27 H 1.07995 * 120.00087 * 180.02562 * 5 4 3 28 28 H 1.08001 * 119.99839 * 180.22836 * 6 5 4 29 29 H 1.09005 * 109.47497 * 301.11283 * 10 8 7 30 30 H 1.08999 * 109.47320 * 181.11397 * 10 8 7 31 31 H 0.96996 * 120.00166 * 180.02562 * 14 13 11 32 32 H 1.09001 * 109.46991 * 63.94487 * 20 19 8 33 33 H 1.08995 * 109.47499 * 183.95182 * 20 19 8 34 34 H 1.09002 * 109.46574 * 303.95638 * 20 19 8 35 35 H 1.08990 * 109.47757 * 66.83965 * 21 19 8 36 36 H 1.09007 * 109.46913 * 186.84703 * 21 19 8 37 37 H 1.09005 * 109.46628 * 306.83847 * 21 19 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2718 0.0000 0.0016 6 6 3.5806 -1.1970 0.0061 7 6 2.1981 -1.1970 -0.0005 8 6 1.4446 -2.5021 -0.0005 9 1 0.5340 -2.3959 0.5892 10 6 1.0802 -2.8806 -1.4375 11 6 2.3400 -3.0539 -2.2462 12 1 3.3042 -2.9906 -1.7638 13 6 2.2616 -3.2933 -3.6017 14 7 3.3610 -3.4451 -4.3073 15 14 0.5938 -3.4035 -4.4358 16 1 0.1836 -2.0546 -4.9021 17 1 0.6814 -4.3235 -5.5982 18 1 -0.4094 -3.9198 -3.4703 19 7 2.2869 -3.5539 0.5843 20 6 2.5165 -3.3101 2.0146 21 6 1.6993 -4.8821 0.3643 22 1 -0.3633 -0.0003 1.0277 23 1 -0.3632 0.8902 -0.5135 24 1 -0.3633 -0.8897 -0.5142 25 1 1.6584 2.1327 -0.0004 26 1 4.1205 2.1326 0.0010 27 1 5.3517 -0.0001 0.0024 28 1 4.1206 -2.1323 0.0107 29 1 0.4715 -2.0909 -1.8781 30 1 0.5180 -3.8144 -1.4359 31 1 3.3059 -3.6132 -5.2610 32 1 1.5683 -3.3655 2.5494 33 1 3.1994 -4.0638 2.4066 34 1 2.9520 -2.3200 2.1490 35 1 1.7163 -5.1153 -0.7003 36 1 2.2761 -5.6294 0.9093 37 1 0.6692 -4.8872 0.7208 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259618120.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:08:21 Heat of formation + Delta-G solvation = 12.841136 kcal Electronic energy + Delta-G solvation = -17070.108597 eV Core-core repulsion = 14618.637613 eV Total energy + Delta-G solvation = -2451.470984 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 233.148 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.78697 -38.19357 -34.86060 -33.83949 -32.50387 -31.04615 -28.19508 -27.68058 -26.96026 -24.12066 -23.22489 -22.00106 -20.43619 -18.85806 -17.31021 -16.84183 -16.18885 -15.99597 -15.68388 -15.16670 -15.12561 -14.51101 -14.45187 -13.91328 -13.79714 -13.54389 -13.21212 -13.08568 -13.00365 -12.76566 -12.55018 -12.53415 -12.18838 -11.87129 -11.67706 -11.58513 -11.46619 -11.01096 -10.62684 -9.41301 -9.23348 -8.97724 -8.11695 -6.08931 0.65054 0.74722 1.35653 1.37151 1.46442 2.43548 3.03513 3.18267 3.27435 4.00633 4.13052 4.25165 4.36235 4.37641 4.49612 4.53025 4.57213 4.63089 4.78801 4.82084 4.84535 4.90820 4.99720 5.02994 5.05201 5.15426 5.27202 5.29707 5.45083 5.47474 5.75343 5.77053 5.84419 5.94650 6.32502 6.39393 6.42142 6.60084 7.03209 7.50745 9.04747 Molecular weight = 233.15amu Principal moments of inertia in cm(-1) A = 0.019560 B = 0.010972 C = 0.009406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.173248 B = 2551.318542 C = 2976.219521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.107 4.107 3 C -0.132 4.132 4 C -0.131 4.131 5 C -0.149 4.149 6 C -0.092 4.092 7 C -0.063 4.063 8 C 0.143 3.857 9 H 0.044 0.956 10 C -0.006 4.006 11 C -0.475 4.475 12 H 0.057 0.943 13 C 0.001 3.999 14 N -0.955 5.955 15 Si 0.928 3.072 16 H -0.276 1.276 17 H -0.292 1.292 18 H -0.249 1.249 19 N -0.546 5.546 20 C 0.028 3.972 21 C 0.034 3.966 22 H 0.082 0.918 23 H 0.078 0.922 24 H 0.056 0.944 25 H 0.142 0.858 26 H 0.142 0.858 27 H 0.125 0.875 28 H 0.109 0.891 29 H 0.017 0.983 30 H 0.022 0.978 31 H 0.258 0.742 32 H 0.028 0.972 33 H 0.075 0.925 34 H 0.060 0.940 35 H 0.056 0.944 36 H 0.074 0.926 37 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.440 5.879 12.194 14.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.107 4.107 3 C -0.150 4.150 4 C -0.148 4.148 5 C -0.167 4.167 6 C -0.110 4.110 7 C -0.063 4.063 8 C 0.035 3.965 9 H 0.061 0.939 10 C -0.043 4.043 11 C -0.513 4.513 12 H 0.075 0.925 13 C -0.194 4.194 14 N -0.598 5.598 15 Si 0.754 3.246 16 H -0.201 1.201 17 H -0.218 1.218 18 H -0.173 1.173 19 N -0.270 5.270 20 C -0.120 4.120 21 C -0.114 4.114 22 H 0.101 0.899 23 H 0.097 0.903 24 H 0.075 0.925 25 H 0.160 0.840 26 H 0.159 0.841 27 H 0.143 0.857 28 H 0.127 0.873 29 H 0.035 0.965 30 H 0.040 0.960 31 H 0.067 0.933 32 H 0.046 0.954 33 H 0.093 0.907 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.093 0.907 37 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -4.949 5.839 11.803 14.068 hybrid contribution -0.929 -0.392 -0.666 1.209 sum -5.879 5.447 11.138 13.721 Atomic orbital electron populations 1.20850 0.90388 1.02968 1.02788 1.20028 0.97063 0.92735 1.00894 1.21181 0.94475 0.97538 1.01835 1.21307 0.94601 0.98132 1.00801 1.21345 1.00287 0.92923 1.02111 1.21021 0.94333 0.97911 0.97755 1.19643 0.93986 0.93857 0.98860 1.20377 0.91978 0.88674 0.95460 0.93886 1.19702 0.96164 0.95893 0.92587 1.21264 0.93696 1.44312 0.92031 0.92518 1.25800 0.99061 0.95957 0.98532 1.70061 1.29351 1.53167 1.07234 0.85991 0.81977 0.78106 0.78544 1.20144 1.21788 1.17279 1.61696 1.48759 1.02291 1.14244 1.22409 1.00156 1.02242 0.87186 1.22281 0.96871 0.90059 1.02152 0.89909 0.90337 0.92521 0.84015 0.84070 0.85678 0.87275 0.96452 0.96029 0.93333 0.95387 0.90653 0.92116 0.92538 0.90734 0.95453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.16 9.22 71.24 0.66 -2.51 16 2 C -0.11 -3.64 5.88 -19.86 -0.12 -3.76 16 3 C -0.13 -4.02 9.70 22.27 0.22 -3.81 16 4 C -0.13 -3.99 10.05 22.27 0.22 -3.77 16 5 C -0.15 -5.23 10.05 22.27 0.22 -5.01 16 6 C -0.09 -3.72 6.86 22.27 0.15 -3.57 16 7 C -0.06 -2.46 3.83 -19.86 -0.08 -2.54 16 8 C 0.14 5.62 1.28 44.17 0.06 5.67 16 9 H 0.04 1.54 6.96 -2.39 -0.02 1.52 16 10 C -0.01 -0.28 3.05 29.85 0.09 -0.19 16 11 C -0.47 -26.60 7.98 25.60 0.20 -26.39 16 12 H 0.06 3.52 6.09 -2.91 -0.02 3.50 16 13 C 0.00 0.07 5.47 84.65 0.46 0.53 16 14 N -0.96 -60.75 13.96 21.45 0.30 -60.45 16 15 Si 0.93 44.98 27.37 68.60 1.88 46.86 16 16 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 17 H -0.29 -14.10 7.11 99.48 0.71 -13.40 16 18 H -0.25 -11.12 6.69 99.48 0.67 -10.46 16 19 N -0.55 -20.49 3.21 -927.73 -2.98 -23.47 16 20 C 0.03 0.84 9.14 127.69 1.17 2.00 16 21 C 0.03 1.20 8.62 127.69 1.10 2.30 16 22 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 23 H 0.08 1.88 8.09 -2.39 -0.02 1.86 16 24 H 0.06 1.74 5.44 -2.39 -0.01 1.73 16 25 H 0.14 3.34 8.06 -2.91 -0.02 3.32 16 26 H 0.14 3.35 8.06 -2.91 -0.02 3.33 16 27 H 0.13 3.90 8.06 -2.91 -0.02 3.87 16 28 H 0.11 4.86 6.64 -2.91 -0.02 4.84 16 29 H 0.02 0.80 6.07 -2.38 -0.01 0.79 16 30 H 0.02 0.99 5.95 -2.39 -0.01 0.97 16 31 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 32 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.07 2.00 8.12 -2.39 -0.02 1.98 16 34 H 0.06 1.87 6.38 -2.39 -0.02 1.85 16 35 H 0.06 2.34 6.21 -2.39 -0.01 2.33 16 36 H 0.07 2.25 8.05 -2.38 -0.02 2.23 16 37 H 0.03 0.85 8.11 -2.38 -0.02 0.83 16 Total: -1.00 -66.54 287.46 4.56 -61.98 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: 1.00 Total: 16.12 kcal Atomic # 6 Polarization: -45.40 SS G_CDS: 4.36 Total: -41.04 kcal Atomic # 7 Polarization: -81.24 SS G_CDS: -2.68 Total: -83.92 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 1.88 Total: 46.86 kcal Total: -66.54 4.56 -61.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259618120.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.822 kcal (2) G-P(sol) polarization free energy of solvation -66.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds