Wall clock time and date at job start Mon Mar 30 2020 05:52:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 110.80377 * 2 1 4 4 C 1.50695 * 109.47501 * 308.31273 * 3 2 1 5 5 H 1.08000 * 120.00122 * 0.02562 * 4 3 2 6 6 C 1.37873 * 120.00178 * 179.97438 * 4 3 2 7 7 N 1.31520 * 120.00234 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 120.00231 * 179.97438 * 6 4 3 9 9 H 1.48504 * 109.47075 * 89.99759 * 8 6 4 10 10 H 1.48495 * 109.47642 * 209.99968 * 8 6 4 11 11 H 1.48493 * 109.47151 * 330.00334 * 8 6 4 12 12 C 1.54700 * 110.75187 * 123.31144 * 2 1 3 13 13 C 1.51662 * 101.93870 * 92.92364 * 12 2 1 14 14 C 1.37789 * 132.10690 * 195.77307 * 13 12 2 15 15 C 1.38254 * 120.05306 * 179.60552 * 14 13 12 16 16 C 1.38799 * 119.70515 * 359.97438 * 15 14 13 17 17 O 1.35890 * 119.88171 * 180.17466 * 16 15 14 18 18 C 1.38637 * 120.26064 * 0.17665 * 16 15 14 19 19 C 1.39027 * 106.97042 * 15.73227 * 13 12 2 20 20 O 1.36147 * 111.25400 * 0.58924 * 19 13 12 21 21 H 1.08996 * 109.47162 * 296.68290 * 1 2 3 22 22 H 1.08998 * 109.47115 * 56.69097 * 1 2 3 23 23 H 1.09006 * 109.46574 * 176.68763 * 1 2 3 24 24 H 1.09008 * 109.46795 * 68.31090 * 3 2 1 25 25 H 1.08999 * 109.47170 * 188.31002 * 3 2 1 26 26 H 0.96997 * 120.00404 * 179.97438 * 7 6 4 27 27 H 1.09002 * 110.94589 * 211.09640 * 12 2 1 28 28 H 1.08997 * 110.94135 * 334.75507 * 12 2 1 29 29 H 1.08009 * 119.97598 * 359.62588 * 14 13 12 30 30 H 1.07991 * 120.14853 * 180.02562 * 15 14 13 31 31 H 0.96695 * 114.00723 * 89.99990 * 17 16 15 32 32 H 1.07999 * 119.96144 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0734 1.4303 0.0000 4 6 1.4285 2.2128 -1.1148 5 1 0.7032 1.7377 -1.7587 6 6 1.7636 3.5355 -1.3121 7 7 2.6457 4.1146 -0.5271 8 14 0.9647 4.5053 -2.6944 9 1 -0.2748 5.1519 -2.1933 10 1 1.9063 5.5473 -3.1767 11 1 0.6270 3.5877 -3.8119 12 6 2.0781 -0.7945 1.2090 13 6 2.2601 -2.1793 0.6179 14 6 2.4427 -3.4152 1.1991 15 6 2.5765 -4.5401 0.4065 16 6 2.5253 -4.4180 -0.9752 17 8 2.6528 -5.5217 -1.7576 18 6 2.3447 -3.1742 -1.5604 19 6 2.2144 -2.0396 -0.7646 20 8 2.0393 -0.7381 -1.1236 21 1 -0.3633 0.4615 0.9182 22 1 -0.3633 0.5643 -0.8588 23 1 -0.3633 -1.0260 -0.0594 24 1 1.8474 1.9048 0.9550 25 1 3.1530 1.4088 -0.1485 26 1 2.8817 5.0451 -0.6661 27 1 3.0313 -0.3856 1.5441 28 1 1.3551 -0.8109 2.0245 29 1 2.4811 -3.5054 2.2747 30 1 2.7193 -5.5095 0.8603 31 1 1.8145 -5.9580 -1.9620 32 1 2.3052 -3.0848 -2.6360 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261050815.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:00 Heat of formation + Delta-G solvation = -79.559845 kcal Electronic energy + Delta-G solvation = -16195.430472 eV Core-core repulsion = 13506.400925 eV Total energy + Delta-G solvation = -2689.029547 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 234.104 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.22052 -39.73226 -36.98790 -35.62774 -34.00788 -31.69249 -31.04520 -28.92520 -27.49480 -25.18514 -23.51410 -22.64210 -21.43378 -19.25520 -18.48667 -17.52082 -17.17950 -16.90319 -16.52957 -15.81541 -15.46680 -15.09111 -14.73714 -14.45796 -14.22644 -13.66645 -13.40655 -13.11546 -12.94997 -12.86732 -12.70238 -12.56345 -12.33850 -12.11559 -11.93200 -11.53337 -11.18531 -10.99550 -10.59085 -9.73954 -9.00752 -8.20879 -6.28961 0.20569 0.38872 1.38698 1.40361 1.51199 2.28879 2.40714 2.67077 3.13723 3.37388 3.56380 3.71522 3.99181 4.09735 4.23560 4.28175 4.37388 4.61946 4.71749 4.80138 4.91299 4.97833 5.13594 5.25209 5.27287 5.35653 5.40136 5.48393 5.53107 5.70551 5.79433 6.17149 6.38990 6.81744 6.85819 7.38306 8.91190 Molecular weight = 234.10amu Principal moments of inertia in cm(-1) A = 0.043293 B = 0.006116 C = 0.005718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.596010 B = 4576.730508 C = 4895.787931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.109 3.891 3 C 0.038 3.962 4 C -0.526 4.526 5 H 0.061 0.939 6 C 0.002 3.998 7 N -0.932 5.932 8 Si 0.960 3.040 9 H -0.267 1.267 10 H -0.283 1.283 11 H -0.270 1.270 12 C -0.097 4.097 13 C -0.193 4.193 14 C -0.049 4.049 15 C -0.174 4.174 16 C 0.141 3.859 17 O -0.502 6.502 18 C -0.194 4.194 19 C 0.100 3.900 20 O -0.318 6.318 21 H 0.082 0.918 22 H 0.058 0.942 23 H 0.059 0.941 24 H 0.029 0.971 25 H -0.008 1.008 26 H 0.264 0.736 27 H 0.080 0.920 28 H 0.112 0.888 29 H 0.159 0.841 30 H 0.163 0.837 31 H 0.413 0.587 32 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.964 -16.960 3.555 17.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.073 3.927 3 C 0.001 3.999 4 C -0.564 4.564 5 H 0.079 0.921 6 C -0.195 4.195 7 N -0.573 5.573 8 Si 0.785 3.215 9 H -0.192 1.192 10 H -0.209 1.209 11 H -0.195 1.195 12 C -0.134 4.134 13 C -0.194 4.194 14 C -0.067 4.067 15 C -0.192 4.192 16 C 0.096 3.904 17 O -0.315 6.315 18 C -0.214 4.214 19 C 0.054 3.946 20 O -0.233 6.233 21 H 0.101 0.899 22 H 0.077 0.923 23 H 0.078 0.922 24 H 0.047 0.953 25 H 0.010 0.990 26 H 0.072 0.928 27 H 0.098 0.902 28 H 0.130 0.870 29 H 0.177 0.823 30 H 0.180 0.820 31 H 0.273 0.727 32 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -3.267 -16.544 3.391 17.201 hybrid contribution -0.481 0.988 -0.879 1.407 sum -3.748 -15.556 2.511 16.197 Atomic orbital electron populations 1.22011 0.92807 1.01381 1.03632 1.23013 0.95015 0.92619 0.82091 1.19066 0.94872 0.88795 0.97193 1.21515 1.23928 0.95903 1.15040 0.92101 1.25873 0.95757 0.99039 0.98877 1.70071 1.34029 1.12922 1.40269 0.85519 0.78478 0.78180 0.79338 1.19226 1.20895 1.19497 1.21883 1.02719 0.90359 0.98419 1.21105 1.08349 0.96482 0.93416 1.20504 0.95777 0.88994 1.01430 1.21512 1.05487 1.00342 0.91893 1.18026 0.97547 0.85154 0.89645 1.84750 1.37133 1.39506 1.70138 1.20647 1.10248 0.90134 1.00333 1.19911 0.95399 0.85397 0.93928 1.86980 1.79678 1.16543 1.40101 0.89921 0.92335 0.92216 0.95321 0.98994 0.92763 0.90159 0.86959 0.82296 0.81952 0.72683 0.85577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.29 8.55 71.98 0.62 -4.68 16 2 C 0.11 4.66 0.89 -10.21 -0.01 4.66 16 3 C 0.04 1.99 4.33 29.85 0.13 2.12 16 4 C -0.53 -29.98 8.34 25.60 0.21 -29.77 16 5 H 0.06 3.41 6.19 -2.91 -0.02 3.40 16 6 C 0.00 0.13 5.46 84.65 0.46 0.59 16 7 N -0.93 -56.53 13.29 21.45 0.28 -56.25 16 8 Si 0.96 44.91 29.54 68.60 2.03 46.93 16 9 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 10 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 11 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 12 C -0.10 -3.32 6.18 30.73 0.19 -3.13 16 13 C -0.19 -6.20 6.27 -19.47 -0.12 -6.33 16 14 C -0.05 -1.18 10.03 22.17 0.22 -0.96 16 15 C -0.17 -3.82 10.00 22.41 0.22 -3.60 16 16 C 0.14 3.61 6.70 22.50 0.15 3.76 16 17 O -0.50 -10.35 13.49 -92.31 -1.25 -11.59 16 18 C -0.19 -6.28 10.01 22.60 0.23 -6.05 16 19 C 0.10 3.76 6.91 22.69 0.16 3.92 16 20 O -0.32 -14.65 10.45 -95.22 -1.00 -15.65 16 21 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 22 H 0.06 2.42 6.15 -2.39 -0.01 2.41 16 23 H 0.06 1.96 8.08 -2.38 -0.02 1.94 16 24 H 0.03 1.54 8.14 -2.38 -0.02 1.52 16 25 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 26 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 27 H 0.08 2.85 7.93 -2.39 -0.02 2.83 16 28 H 0.11 3.14 7.92 -2.39 -0.02 3.12 16 29 H 0.16 2.72 8.06 -2.91 -0.02 2.70 16 30 H 0.16 2.47 8.06 -2.91 -0.02 2.45 16 31 H 0.41 4.04 9.06 -74.06 -0.67 3.37 16 32 H 0.13 3.99 8.06 -2.91 -0.02 3.97 16 Total: -1.00 -69.97 273.99 2.99 -66.98 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: 0.46 Total: 9.05 kcal Atomic # 6 Polarization: -41.94 SS G_CDS: 2.46 Total: -39.48 kcal Atomic # 7 Polarization: -56.53 SS G_CDS: 0.28 Total: -56.25 kcal Atomic # 8 Polarization: -25.00 SS G_CDS: -2.24 Total: -27.24 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.93 kcal Total: -69.97 2.99 -66.98 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261050815.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.580 kcal (2) G-P(sol) polarization free energy of solvation -69.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds