Wall clock time and date at job start Mon Mar 30 2020 06:06:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 C 1.53001 * 109.46598 * 233.10732 * 3 2 1 5 5 N 1.46905 * 109.46740 * 174.24668 * 4 3 2 6 6 C 1.46900 * 110.99796 * 191.42365 * 5 4 3 7 7 C 1.53008 * 109.47002 * 162.70364 * 6 5 4 8 8 C 1.50700 * 115.54736 * 305.19898 * 7 6 5 9 9 H 1.08006 * 119.99682 * 114.84157 * 8 7 6 10 10 C 1.37873 * 120.00150 * 294.83550 * 8 7 6 11 11 N 1.31516 * 120.00126 * 1.05216 * 10 8 7 12 12 Si 1.86802 * 120.00008 * 181.04724 * 10 8 7 13 13 H 1.48498 * 109.47071 * 180.02562 * 12 10 8 14 14 H 1.48499 * 109.47096 * 300.00253 * 12 10 8 15 15 H 1.48499 * 109.46803 * 60.00305 * 12 10 8 16 16 C 1.52995 * 117.49513 * 90.86981 * 7 6 5 17 17 C 1.52989 * 117.49770 * 159.53029 * 7 6 5 18 18 C 1.46898 * 110.99832 * 67.47447 * 5 4 3 19 19 C 1.52994 * 117.49952 * 267.54492 * 18 5 4 20 20 C 1.52999 * 117.49987 * 198.91956 * 18 5 4 21 21 H 1.08999 * 109.47080 * 113.11087 * 3 2 1 22 22 H 1.08997 * 109.47188 * 353.10853 * 3 2 1 23 23 H 1.09003 * 109.47229 * 54.25099 * 4 3 2 24 24 H 1.08998 * 109.47525 * 294.24737 * 4 3 2 25 25 H 1.09008 * 109.47054 * 42.70740 * 6 5 4 26 26 H 1.08996 * 109.47791 * 282.70564 * 6 5 4 27 27 H 0.97003 * 120.00014 * 174.99783 * 11 10 8 28 28 H 1.09007 * 117.49470 * 215.00242 * 16 7 6 29 29 H 1.09000 * 117.50300 * 0.02562 * 16 7 6 30 30 H 1.09004 * 117.50538 * 359.97387 * 17 7 6 31 31 H 1.09002 * 117.50008 * 144.99948 * 17 7 6 32 32 H 1.09005 * 115.55283 * 53.25678 * 18 5 4 33 33 H 1.09006 * 117.50183 * 359.97438 * 19 18 5 34 34 H 1.09002 * 117.49990 * 145.02491 * 19 18 5 35 35 H 1.08999 * 117.50463 * 214.98303 * 20 18 5 36 36 H 1.09000 * 117.49857 * 0.02562 * 20 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1175 0.8669 1.1537 5 7 4.5800 0.7579 1.2389 6 6 5.0802 1.3506 2.4865 7 6 6.5029 0.8543 2.7524 8 6 6.6746 -0.6427 2.7798 9 1 7.2765 -1.1310 2.0277 10 6 6.0633 -1.3887 3.7650 11 7 5.3136 -0.7964 4.6687 12 14 6.2998 -3.2410 3.8161 13 1 5.5429 -3.8052 4.9624 14 1 5.8009 -3.8388 2.5517 15 1 7.7433 -3.5514 3.9747 16 6 7.6578 1.6878 2.1935 17 6 7.3749 1.6828 3.6979 18 6 5.2227 1.3723 0.0696 19 6 5.5335 0.4660 -1.1232 20 6 6.6688 0.9742 -0.2323 21 1 2.9712 0.4042 -0.9452 22 1 2.9718 -1.0194 0.1233 23 1 2.6727 0.5254 2.0884 24 1 2.8403 1.9062 0.9777 25 1 4.4328 1.0576 3.3131 26 1 5.0853 2.4368 2.3964 27 1 4.8254 -1.3272 5.3175 28 1 8.5419 1.1533 1.8456 29 1 7.4041 2.5899 1.6368 30 1 6.9354 2.5817 4.1302 31 1 8.0729 1.1451 4.3397 32 1 4.9292 2.4005 -0.1422 33 1 5.2615 -0.5863 -1.0402 34 1 5.4443 0.8978 -2.1201 35 1 7.3266 1.7402 -0.6430 36 1 7.1432 0.2560 0.4365 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088255480.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:06:39 Heat of formation + Delta-G solvation = 71.109655 kcal Electronic energy + Delta-G solvation = -16907.617572 eV Core-core repulsion = 14393.247390 eV Total energy + Delta-G solvation = -2514.370182 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 234.143 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.93197 -37.89665 -37.13444 -35.06185 -33.82667 -31.80321 -27.58500 -26.28877 -24.11373 -23.75132 -21.99589 -21.18803 -20.66296 -18.42019 -17.67425 -16.77672 -16.39480 -16.33838 -15.54640 -15.27953 -15.08481 -14.80382 -14.54050 -13.67192 -13.55196 -13.40454 -13.20785 -12.99203 -12.72715 -12.47307 -12.36010 -12.18708 -11.97997 -11.83043 -11.75449 -11.22569 -10.95063 -10.65111 -10.56948 -10.16369 -9.73167 -8.83538 -7.89559 -5.93655 1.50554 1.52687 1.57112 1.75200 1.83200 2.57196 2.87151 3.23420 3.36654 3.50122 3.77178 4.16384 4.25339 4.38767 4.46784 4.49394 4.63087 4.67047 4.71375 4.85452 4.92959 5.10355 5.11106 5.13634 5.15245 5.17676 5.27905 5.40015 5.50509 5.70845 5.75884 5.85672 6.05504 6.48352 6.57281 6.62132 6.74952 7.07500 7.69994 9.18049 Molecular weight = 234.14amu Principal moments of inertia in cm(-1) A = 0.017906 B = 0.010144 C = 0.008019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.320232 B = 2759.639524 C = 3490.745790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C 0.242 3.758 3 C -0.011 4.011 4 C 0.069 3.931 5 N -0.495 5.495 6 C 0.120 3.880 7 C 0.048 3.952 8 C -0.459 4.459 9 H 0.050 0.950 10 C 0.032 3.968 11 N -0.913 5.913 12 Si 0.932 3.068 13 H -0.297 1.297 14 H -0.270 1.270 15 H -0.281 1.281 16 C -0.168 4.168 17 C -0.204 4.204 18 C -0.003 4.003 19 C -0.155 4.155 20 C -0.169 4.169 21 H 0.136 0.864 22 H 0.122 0.878 23 H 0.057 0.943 24 H 0.042 0.958 25 H 0.057 0.943 26 H 0.004 0.996 27 H 0.252 0.748 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.065 0.935 31 H 0.056 0.944 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.113 0.887 35 H 0.096 0.904 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.668 4.061 -10.507 11.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.178 5.178 2 C -0.074 4.074 3 C -0.051 4.051 4 C -0.061 4.061 5 N -0.219 5.219 6 C -0.007 4.007 7 C 0.048 3.952 8 C -0.497 4.497 9 H 0.068 0.932 10 C -0.167 4.167 11 N -0.553 5.553 12 Si 0.760 3.240 13 H -0.224 1.224 14 H -0.196 1.196 15 H -0.207 1.207 16 C -0.205 4.205 17 C -0.242 4.242 18 C -0.111 4.111 19 C -0.193 4.193 20 C -0.206 4.206 21 H 0.154 0.846 22 H 0.140 0.860 23 H 0.076 0.924 24 H 0.061 0.939 25 H 0.076 0.924 26 H 0.022 0.978 27 H 0.061 0.939 28 H 0.094 0.906 29 H 0.104 0.896 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.102 0.898 33 H 0.112 0.888 34 H 0.132 0.868 35 H 0.114 0.886 36 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -0.976 3.515 -10.304 10.930 hybrid contribution 0.258 -0.191 0.856 0.914 sum -0.718 3.324 -9.447 10.041 Atomic orbital electron populations 1.81197 1.14616 1.11111 1.10872 1.29618 0.95509 0.91134 0.91181 1.19369 0.78853 1.04756 1.02117 1.21836 0.88816 0.97786 0.97665 1.61411 1.02824 1.56674 1.00975 1.21271 0.97096 0.92029 0.90337 1.18803 0.87689 0.91758 0.96986 1.20414 1.29139 0.90673 1.09437 0.93236 1.25362 0.95726 1.00426 0.95184 1.70019 1.31135 1.35557 1.18557 0.86031 0.77534 0.83242 0.77172 1.22383 1.19561 1.20706 1.22912 1.01498 1.01921 0.94207 1.22813 1.06430 1.02033 0.92943 1.22356 0.99465 0.95768 0.93519 1.23136 1.02283 0.99789 0.94072 1.23152 0.90980 1.03823 1.02633 0.84634 0.86048 0.92403 0.93944 0.92448 0.97757 0.93901 0.90584 0.89632 0.91657 0.92497 0.89849 0.88819 0.86838 0.88571 0.88899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -16.05 18.54 20.01 0.37 -15.68 16 2 C 0.24 6.43 15.43 89.44 1.38 7.81 16 3 C -0.01 -0.24 5.29 28.79 0.15 -0.09 16 4 C 0.07 1.97 4.91 86.30 0.42 2.39 16 5 N -0.50 -16.81 4.26 -870.96 -3.71 -20.52 16 6 C 0.12 4.94 4.70 86.31 0.41 5.34 16 7 C 0.05 2.14 0.67 -52.93 -0.04 2.10 16 8 C -0.46 -22.81 7.84 25.60 0.20 -22.61 16 9 H 0.05 2.48 7.17 -2.91 -0.02 2.46 16 10 C 0.03 1.64 5.42 84.65 0.46 2.10 16 11 N -0.91 -49.94 12.14 21.45 0.26 -49.68 16 12 Si 0.93 42.24 29.54 68.60 2.03 44.27 16 13 H -0.30 -13.71 7.11 99.48 0.71 -13.01 16 14 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 15 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 16 C -0.17 -6.38 6.63 30.62 0.20 -6.18 16 17 C -0.20 -8.93 9.96 30.61 0.30 -8.62 16 18 C 0.00 -0.07 4.28 44.91 0.19 0.12 16 19 C -0.16 -3.51 8.96 30.59 0.27 -3.23 16 20 C -0.17 -4.74 7.25 30.59 0.22 -4.52 16 21 H 0.14 2.27 6.72 -2.39 -0.02 2.26 16 22 H 0.12 2.74 8.14 -2.39 -0.02 2.72 16 23 H 0.06 1.92 7.81 -2.39 -0.02 1.91 16 24 H 0.04 1.11 8.11 -2.39 -0.02 1.09 16 25 H 0.06 2.75 6.70 -2.38 -0.02 2.73 16 26 H 0.00 0.17 7.98 -2.39 -0.02 0.15 16 27 H 0.25 13.58 8.32 -92.71 -0.77 12.80 16 28 H 0.08 2.85 7.98 -2.38 -0.02 2.84 16 29 H 0.09 2.87 7.71 -2.39 -0.02 2.85 16 30 H 0.06 2.73 8.14 -2.39 -0.02 2.71 16 31 H 0.06 2.68 8.14 -2.39 -0.02 2.66 16 32 H 0.08 2.08 8.14 -2.38 -0.02 2.06 16 33 H 0.09 2.25 8.14 -2.38 -0.02 2.23 16 34 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 36 H 0.09 3.30 4.80 -2.39 -0.01 3.29 16 Total: -1.00 -58.36 297.41 4.18 -54.18 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: 1.05 Total: 12.83 kcal Atomic # 6 Polarization: -29.57 SS G_CDS: 4.18 Total: -25.39 kcal Atomic # 7 Polarization: -82.80 SS G_CDS: -3.08 Total: -85.89 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.27 kcal Total: -58.36 4.18 -54.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088255480.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.288 kcal (2) G-P(sol) polarization free energy of solvation -58.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.178 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds