Wall clock time and date at job start Mon Mar 30 2020 06:06:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86805 * 119.99522 * 2 1 4 4 H 1.48493 * 109.46986 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47039 * 300.00084 * 3 2 1 6 6 H 1.48500 * 109.47086 * 59.99894 * 3 2 1 7 7 C 1.37868 * 120.00234 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99930 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00338 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47304 * 179.97438 * 9 7 2 11 11 N 1.46497 * 109.46972 * 179.97438 * 10 9 7 12 12 C 1.36658 * 125.60119 * 269.97286 * 11 10 9 13 13 C 1.33975 * 108.05634 * 179.97438 * 12 11 10 14 14 C 1.41450 * 107.54483 * 0.13853 * 13 12 11 15 15 C 1.33982 * 107.54813 * 359.82177 * 14 13 12 16 16 C 1.50798 * 123.50697 * 179.67350 * 14 13 12 17 17 H 1.08999 * 109.73240 * 103.11708 * 16 14 13 18 18 N 1.46904 * 109.73188 * 223.76108 * 16 14 13 19 19 C 1.53451 * 108.06783 * 343.41707 * 16 14 13 20 20 C 1.53006 * 109.80421 * 50.76045 * 19 16 14 21 21 C 1.50794 * 128.95146 * 180.20879 * 13 12 11 22 22 H 0.97001 * 120.00258 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.47104 * 59.99671 * 9 7 2 24 24 H 1.09004 * 109.46590 * 299.99911 * 9 7 2 25 25 H 1.09000 * 109.47252 * 59.99831 * 10 9 7 26 26 H 1.08998 * 109.47220 * 299.99979 * 10 9 7 27 27 H 1.08004 * 125.96953 * 0.02562 * 12 11 10 28 28 H 1.07999 * 125.97654 * 180.12358 * 15 14 13 29 29 H 1.00901 * 111.00134 * 180.02562 * 18 16 14 30 30 H 1.00899 * 110.99773 * 303.95053 * 18 16 14 31 31 H 1.09005 * 109.47859 * 290.62469 * 19 16 14 32 32 H 1.09005 * 109.36756 * 170.82870 * 19 16 14 33 33 H 1.09002 * 109.41371 * 167.88155 * 20 19 16 34 34 H 1.09001 * 109.40920 * 48.03012 * 20 19 16 35 35 H 1.09004 * 109.73386 * 43.75005 * 21 13 12 36 36 H 1.09002 * 109.73238 * 283.06626 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.7090 1.3466 0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1939 0.0005 8 1 3.0847 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2455 -3.6619 0.0005 11 7 1.5131 -4.9307 0.0012 12 6 1.1162 -5.6196 1.1126 13 6 0.4767 -6.7256 0.7093 14 6 0.4782 -6.7272 -0.7052 15 6 1.1150 -5.6200 -1.1097 16 6 -0.1446 -7.8199 -1.5371 17 1 -1.1003 -7.4796 -1.9358 18 7 0.7553 -8.1758 -2.6423 19 6 -0.3636 -9.0402 -0.6329 20 6 -1.0997 -8.6169 0.6399 21 6 -0.1552 -7.8123 1.5422 22 1 -0.4850 0.8400 -0.0004 23 1 0.6249 -2.5571 -0.8897 24 1 0.6243 -2.5566 0.8904 25 1 2.8722 -3.6042 0.8905 26 1 2.8722 -3.6042 -0.8894 27 1 1.2873 -5.3236 2.1371 28 1 1.2845 -5.3241 -2.1345 29 1 0.3564 -8.9064 -3.2125 30 1 0.9816 -7.3656 -3.1995 31 1 0.6007 -9.4731 -0.3667 32 1 -0.9582 -9.7826 -1.1654 33 1 -1.4415 -9.5042 1.1729 34 1 -1.9587 -8.0009 0.3737 35 1 -0.7196 -7.3669 2.3615 36 1 0.6192 -8.4673 1.9414 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135467168.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:06:36 Heat of formation + Delta-G solvation = 24.708325 kcal Electronic energy + Delta-G solvation = -16171.794119 eV Core-core repulsion = 13655.411824 eV Total energy + Delta-G solvation = -2516.382295 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 234.143 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.91565 -36.91688 -33.90542 -33.40578 -31.75288 -28.97413 -28.50567 -26.65593 -25.01015 -22.57277 -21.31346 -20.75078 -19.40525 -17.99905 -16.78462 -15.97594 -15.30942 -14.86522 -14.63672 -14.21153 -13.93675 -13.71942 -13.43927 -12.71077 -12.42606 -12.37966 -12.10446 -11.75776 -11.71440 -11.22754 -11.06542 -10.79779 -10.64382 -10.38931 -10.31730 -10.09585 -9.80871 -9.34532 -8.64171 -8.50431 -7.60336 -7.50557 -6.14059 -4.19670 2.93366 3.23169 3.30831 3.34288 3.39292 3.71127 4.35938 4.69282 5.01989 5.06573 5.22028 5.31152 5.53034 5.62188 5.66468 5.68010 5.75237 5.88752 5.97131 6.08749 6.14153 6.17735 6.20018 6.26157 6.51782 6.53472 6.73090 7.01355 7.28722 7.46790 7.49869 7.52097 7.60759 7.79201 7.91177 8.04692 8.22462 8.86847 9.45832 10.96999 Molecular weight = 234.14amu Principal moments of inertia in cm(-1) A = 0.045057 B = 0.004961 C = 0.004778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.290800 B = 5642.955876 C = 5859.352184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.897 3.103 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.528 4.528 8 H 0.059 0.941 9 C 0.013 3.987 10 C 0.106 3.894 11 N -0.436 5.436 12 C -0.001 4.001 13 C -0.177 4.177 14 C -0.174 4.174 15 C 0.009 3.991 16 C 0.168 3.832 17 H 0.033 0.967 18 N -0.843 5.843 19 C -0.105 4.105 20 C -0.111 4.111 21 C -0.040 4.040 22 H 0.262 0.738 23 H 0.022 0.978 24 H 0.023 0.977 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.153 0.847 28 H 0.149 0.851 29 H 0.334 0.666 30 H 0.340 0.660 31 H 0.070 0.930 32 H 0.052 0.948 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.062 0.938 36 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.469 -15.151 -1.116 15.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.142 4.142 3 Si 0.724 3.276 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.567 4.567 8 H 0.077 0.923 9 C -0.025 4.025 10 C -0.015 4.015 11 N -0.109 5.109 12 C -0.132 4.132 13 C -0.184 4.184 14 C -0.181 4.181 15 C -0.123 4.123 16 C 0.057 3.943 17 H 0.051 0.949 18 N -0.373 5.373 19 C -0.143 4.143 20 C -0.150 4.150 21 C -0.078 4.078 22 H 0.072 0.928 23 H 0.040 0.960 24 H 0.041 0.959 25 H 0.094 0.906 26 H 0.094 0.906 27 H 0.171 0.829 28 H 0.167 0.833 29 H 0.145 0.855 30 H 0.153 0.847 31 H 0.089 0.911 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.099 -14.894 -0.542 14.904 hybrid contribution -0.361 1.485 -0.675 1.670 sum -0.262 -13.409 -1.217 13.467 Atomic orbital electron populations 1.69988 1.06158 1.26857 1.49822 1.25010 0.94857 0.99445 0.94844 0.86465 0.80041 0.83363 0.77734 1.19601 1.20857 1.20849 1.21080 0.93093 0.90475 1.52066 0.92268 1.19437 0.94082 0.90628 0.98333 1.22286 0.95601 0.81165 1.02419 1.44585 1.42688 1.18492 1.05162 1.21208 1.05456 0.94745 0.91781 1.19132 1.07607 0.98194 0.93515 1.18957 1.08362 0.97202 0.93563 1.21072 1.05134 0.94468 0.91647 1.19629 0.92004 0.92597 0.90036 0.94895 1.58750 1.48965 1.14417 1.15148 1.21519 1.00751 0.96393 0.95603 1.21481 0.98386 0.99216 0.95868 1.19928 0.97127 0.94567 0.96186 0.92784 0.95973 0.95890 0.90582 0.90617 0.82930 0.83310 0.85466 0.84707 0.91125 0.92957 0.92277 0.92094 0.91950 0.92082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.41 13.29 55.43 0.74 -25.68 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 3 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 4 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.53 -14.45 9.11 -34.44 -0.31 -14.77 16 8 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 9 C 0.01 0.33 5.30 -27.89 -0.15 0.18 16 10 C 0.11 2.15 6.03 -4.05 -0.02 2.13 16 11 N -0.44 -8.42 2.76 -117.43 -0.32 -8.74 16 12 C 0.00 -0.02 11.41 -16.90 -0.19 -0.21 16 13 C -0.18 -3.00 5.92 -104.85 -0.62 -3.62 16 14 C -0.17 -2.94 5.60 -104.85 -0.59 -3.52 16 15 C 0.01 0.16 10.93 -16.90 -0.18 -0.03 16 16 C 0.17 2.33 3.62 -68.58 -0.25 2.08 16 17 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 18 N -0.84 -10.23 9.23 -5.41 -0.05 -10.28 16 19 C -0.10 -1.28 5.46 -26.49 -0.14 -1.43 16 20 C -0.11 -1.34 5.86 -26.51 -0.16 -1.50 16 21 C -0.04 -0.55 6.29 -27.62 -0.17 -0.72 16 22 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 23 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 24 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 26 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 27 H 0.15 2.49 8.06 -52.48 -0.42 2.07 16 28 H 0.15 2.42 7.87 -52.49 -0.41 2.01 16 29 H 0.33 3.23 9.05 -39.29 -0.36 2.87 16 30 H 0.34 3.94 8.43 -39.29 -0.33 3.61 16 31 H 0.07 0.94 8.10 -51.93 -0.42 0.52 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.77 8.10 -51.93 -0.42 0.35 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 296.05 15.07 4.46 4.46 Total: -1.00 -30.30 296.05 -8.80 -39.10 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: -5.71 Total: 4.86 kcal Atomic # 6 Polarization: -16.91 SS G_CDS: -2.89 Total: -19.80 kcal Atomic # 7 Polarization: -45.06 SS G_CDS: 0.36 Total: -44.69 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -30.30 -8.80 -39.10 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135467168.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.807 kcal (2) G-P(sol) polarization free energy of solvation -30.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds