Wall clock time and date at job start Mon Mar 30 2020 06:06:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86805 * 119.99522 * 2 1 4 4 H 1.48493 * 109.46986 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47039 * 300.00084 * 3 2 1 6 6 H 1.48500 * 109.47086 * 59.99894 * 3 2 1 7 7 C 1.37868 * 120.00234 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99930 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00338 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47304 * 179.97438 * 9 7 2 11 11 N 1.46497 * 109.46972 * 179.97438 * 10 9 7 12 12 C 1.36658 * 125.60119 * 269.97286 * 11 10 9 13 13 C 1.33975 * 108.05634 * 179.97438 * 12 11 10 14 14 C 1.41450 * 107.54483 * 0.13853 * 13 12 11 15 15 C 1.33982 * 107.54813 * 359.82177 * 14 13 12 16 16 C 1.50798 * 123.50697 * 179.67350 * 14 13 12 17 17 H 1.08999 * 109.73240 * 103.11708 * 16 14 13 18 18 N 1.46904 * 109.73188 * 223.76108 * 16 14 13 19 19 C 1.53451 * 108.06783 * 343.41707 * 16 14 13 20 20 C 1.53006 * 109.80421 * 50.76045 * 19 16 14 21 21 C 1.50794 * 128.95146 * 180.20879 * 13 12 11 22 22 H 0.97001 * 120.00258 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.47104 * 59.99671 * 9 7 2 24 24 H 1.09004 * 109.46590 * 299.99911 * 9 7 2 25 25 H 1.09000 * 109.47252 * 59.99831 * 10 9 7 26 26 H 1.08998 * 109.47220 * 299.99979 * 10 9 7 27 27 H 1.08004 * 125.96953 * 0.02562 * 12 11 10 28 28 H 1.07999 * 125.97654 * 180.12358 * 15 14 13 29 29 H 1.00901 * 111.00134 * 180.02562 * 18 16 14 30 30 H 1.00899 * 110.99773 * 303.95053 * 18 16 14 31 31 H 1.09005 * 109.47859 * 290.62469 * 19 16 14 32 32 H 1.09005 * 109.36756 * 170.82870 * 19 16 14 33 33 H 1.09002 * 109.41371 * 167.88155 * 20 19 16 34 34 H 1.09001 * 109.40920 * 48.03012 * 20 19 16 35 35 H 1.09004 * 109.73386 * 43.75005 * 21 13 12 36 36 H 1.09002 * 109.73238 * 283.06626 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.7090 1.3466 0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1939 0.0005 8 1 3.0847 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2455 -3.6619 0.0005 11 7 1.5131 -4.9307 0.0012 12 6 1.1162 -5.6196 1.1126 13 6 0.4767 -6.7256 0.7093 14 6 0.4782 -6.7272 -0.7052 15 6 1.1150 -5.6200 -1.1097 16 6 -0.1446 -7.8199 -1.5371 17 1 -1.1003 -7.4796 -1.9358 18 7 0.7553 -8.1758 -2.6423 19 6 -0.3636 -9.0402 -0.6329 20 6 -1.0997 -8.6169 0.6399 21 6 -0.1552 -7.8123 1.5422 22 1 -0.4850 0.8400 -0.0004 23 1 0.6249 -2.5571 -0.8897 24 1 0.6243 -2.5566 0.8904 25 1 2.8722 -3.6042 0.8905 26 1 2.8722 -3.6042 -0.8894 27 1 1.2873 -5.3236 2.1371 28 1 1.2845 -5.3241 -2.1345 29 1 0.3564 -8.9064 -3.2125 30 1 0.9816 -7.3656 -3.1995 31 1 0.6007 -9.4731 -0.3667 32 1 -0.9582 -9.7826 -1.1654 33 1 -1.4415 -9.5042 1.1729 34 1 -1.9587 -8.0009 0.3737 35 1 -0.7196 -7.3669 2.3615 36 1 0.6192 -8.4673 1.9414 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000135467168.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:06:36 Heat of formation + Delta-G solvation = 6.592650 kcal Electronic energy + Delta-G solvation = -16172.579674 eV Core-core repulsion = 13655.411824 eV Total energy + Delta-G solvation = -2517.167849 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 234.143 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.26524 -38.09216 -35.76501 -34.55831 -33.50931 -30.36752 -29.98288 -27.84937 -26.76153 -24.14790 -22.44241 -22.30628 -20.77681 -19.21470 -18.76041 -17.44349 -16.65731 -16.42677 -15.89986 -15.47624 -15.26565 -15.11038 -14.77087 -14.32238 -14.23569 -13.60819 -13.48273 -13.09553 -12.93707 -12.91594 -12.78117 -12.43745 -12.08808 -11.84291 -11.64142 -11.41375 -11.38802 -11.30721 -10.66252 -9.67044 -8.97561 -8.87966 -8.28131 -6.42465 1.39045 1.39202 1.50173 1.53739 2.08756 2.22250 2.41278 3.06020 3.72310 3.90453 4.05163 4.13298 4.23328 4.27858 4.41729 4.46947 4.55884 4.65217 4.69601 4.75099 4.91408 5.00173 5.11078 5.13997 5.25410 5.33301 5.38482 5.46772 5.54604 5.68486 5.76610 6.03369 6.25038 6.30309 6.50486 6.62703 6.71798 6.75786 7.28758 8.84033 Molecular weight = 234.14amu Principal moments of inertia in cm(-1) A = 0.045057 B = 0.004961 C = 0.004778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.290800 B = 5642.955876 C = 5859.352184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.002 3.998 3 Si 0.972 3.028 4 H -0.257 1.257 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.545 4.545 8 H 0.072 0.928 9 C 0.024 3.976 10 C 0.122 3.878 11 N -0.451 5.451 12 C -0.027 4.027 13 C -0.181 4.181 14 C -0.176 4.176 15 C -0.015 4.015 16 C 0.167 3.833 17 H 0.032 0.968 18 N -0.846 5.846 19 C -0.100 4.100 20 C -0.109 4.109 21 C -0.042 4.042 22 H 0.265 0.735 23 H -0.011 1.011 24 H -0.010 1.010 25 H 0.088 0.912 26 H 0.087 0.913 27 H 0.163 0.837 28 H 0.159 0.841 29 H 0.349 0.651 30 H 0.342 0.658 31 H 0.062 0.938 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.053 0.947 35 H 0.068 0.932 36 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.208 -16.158 -1.167 16.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.196 4.196 3 Si 0.796 3.204 4 H -0.180 1.180 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.583 4.583 8 H 0.090 0.910 9 C -0.014 4.014 10 C 0.001 3.999 11 N -0.125 5.125 12 C -0.157 4.157 13 C -0.188 4.188 14 C -0.184 4.184 15 C -0.146 4.146 16 C 0.056 3.944 17 H 0.050 0.950 18 N -0.377 5.377 19 C -0.138 4.138 20 C -0.147 4.147 21 C -0.080 4.080 22 H 0.074 0.926 23 H 0.008 0.992 24 H 0.008 0.992 25 H 0.106 0.894 26 H 0.105 0.895 27 H 0.180 0.820 28 H 0.176 0.824 29 H 0.163 0.837 30 H 0.155 0.845 31 H 0.081 0.919 32 H 0.095 0.905 33 H 0.105 0.895 34 H 0.071 0.929 35 H 0.087 0.913 36 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.781 -15.938 -0.601 15.968 hybrid contribution -0.621 1.733 -0.669 1.959 sum 0.160 -14.205 -1.270 14.262 Atomic orbital electron populations 1.70130 1.08115 1.28024 1.51030 1.26019 0.95697 1.03670 0.94233 0.85294 0.79186 0.78182 0.77753 1.18037 1.20420 1.20432 1.21536 0.93891 0.91358 1.51526 0.91018 1.19230 0.94297 0.92762 0.95110 1.21926 0.94265 0.80182 1.03526 1.44541 1.43696 1.18297 1.05974 1.21618 1.06423 0.95518 0.92151 1.19658 1.06563 0.98423 0.94174 1.19442 1.07270 0.97449 0.94197 1.21455 1.06011 0.95159 0.91970 1.19684 0.91763 0.92450 0.90530 0.95020 1.58705 1.48674 1.15012 1.15284 1.21503 1.00793 0.95969 0.95569 1.21495 0.97560 0.99912 0.95758 1.20055 0.97734 0.93941 0.96259 0.92606 0.99219 0.99167 0.89406 0.89455 0.81974 0.82400 0.83700 0.84504 0.91931 0.90544 0.89533 0.92867 0.91309 0.90880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.68 13.29 21.44 0.28 -56.39 16 2 C 0.00 0.12 5.46 84.65 0.46 0.59 16 3 Si 0.97 43.20 29.54 68.60 2.03 45.23 16 4 H -0.26 -10.70 7.11 99.48 0.71 -10.00 16 5 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 6 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 7 C -0.54 -30.08 9.11 25.60 0.23 -29.84 16 8 H 0.07 3.69 7.74 -2.91 -0.02 3.67 16 9 C 0.02 1.25 5.30 29.85 0.16 1.41 16 10 C 0.12 5.03 6.03 86.38 0.52 5.55 16 11 N -0.45 -17.65 2.76 -525.44 -1.45 -19.10 16 12 C -0.03 -1.00 11.41 82.97 0.95 -0.06 16 13 C -0.18 -6.03 5.92 -20.01 -0.12 -6.15 16 14 C -0.18 -5.87 5.60 -20.01 -0.11 -5.98 16 15 C -0.02 -0.56 10.93 82.97 0.91 0.35 16 16 C 0.17 4.37 3.62 44.35 0.16 4.53 16 17 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 18 N -0.85 -19.13 9.23 -171.03 -1.58 -20.71 16 19 C -0.10 -2.20 5.46 30.75 0.17 -2.04 16 20 C -0.11 -2.35 5.86 30.74 0.18 -2.17 16 21 C -0.04 -1.07 6.29 30.02 0.19 -0.88 16 22 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 23 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 24 H -0.01 -0.59 8.14 -2.38 -0.02 -0.61 16 25 H 0.09 3.38 8.14 -2.39 -0.02 3.36 16 26 H 0.09 3.36 8.14 -2.39 -0.02 3.34 16 27 H 0.16 5.36 8.06 -2.91 -0.02 5.34 16 28 H 0.16 5.22 7.87 -2.91 -0.02 5.20 16 29 H 0.35 6.00 9.05 -89.69 -0.81 5.19 16 30 H 0.34 7.55 8.43 -89.69 -0.76 6.79 16 31 H 0.06 1.50 8.10 -2.38 -0.02 1.48 16 32 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 33 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.05 1.23 8.10 -2.39 -0.02 1.21 16 35 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -65.53 296.05 2.47 -63.06 By element: Atomic # 1 Polarization: 23.10 SS G_CDS: -0.50 Total: 22.60 kcal Atomic # 6 Polarization: -38.39 SS G_CDS: 3.69 Total: -34.69 kcal Atomic # 7 Polarization: -93.45 SS G_CDS: -2.75 Total: -96.20 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Total: -65.53 2.47 -63.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135467168.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.653 kcal (2) G-P(sol) polarization free energy of solvation -65.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds