Wall clock time and date at job start Mon Mar 30 2020 06:26:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38173 * 119.92808 * 2 1 4 4 C 1.38954 * 120.07339 * 180.02562 * 3 2 1 5 5 N 1.39673 * 120.03627 * 179.97438 * 4 3 2 6 6 C 1.38797 * 119.92511 * 359.65825 * 4 3 2 7 7 C 1.38754 * 119.85054 * 0.63708 * 6 4 3 8 8 N 1.39668 * 120.03339 * 179.67987 * 7 6 4 9 9 C 1.46505 * 120.00054 * 5.16930 * 8 7 6 10 10 C 1.46495 * 119.99793 * 185.16730 * 8 7 6 11 11 H 1.09003 * 109.47327 * 356.79986 * 10 8 7 12 12 C 1.53007 * 109.47068 * 116.80051 * 10 8 7 13 13 C 1.50702 * 109.47373 * 236.79891 * 10 8 7 14 14 H 1.08002 * 119.99716 * 354.37749 * 13 10 8 15 15 C 1.37876 * 120.00192 * 174.37918 * 13 10 8 16 16 N 1.31516 * 120.00141 * 0.64435 * 15 13 10 17 17 Si 1.86804 * 120.00003 * 180.92357 * 15 13 10 18 18 H 1.48505 * 109.46876 * 264.72907 * 17 15 13 19 19 H 1.48491 * 109.46963 * 24.72915 * 17 15 13 20 20 H 1.48501 * 109.46823 * 144.73333 * 17 15 13 21 21 C 1.38140 * 119.92468 * 180.02562 * 2 1 3 22 22 H 1.09005 * 109.47192 * 269.97896 * 1 2 3 23 23 H 1.08997 * 109.47357 * 29.97713 * 1 2 3 24 24 H 1.08999 * 109.47260 * 149.98016 * 1 2 3 25 25 H 1.07994 * 119.96296 * 359.97438 * 3 2 1 26 26 H 0.96996 * 119.99456 * 0.02562 * 5 4 3 27 27 H 0.96999 * 119.99813 * 179.97438 * 5 4 3 28 28 H 1.07998 * 120.07354 * 180.31604 * 6 4 3 29 29 H 1.08990 * 109.47129 * 269.99680 * 9 8 7 30 30 H 1.08996 * 109.47260 * 30.00252 * 9 8 7 31 31 H 1.09002 * 109.46863 * 149.99749 * 9 8 7 32 32 H 1.09003 * 109.46723 * 187.16311 * 12 10 8 33 33 H 1.08999 * 109.46825 * 307.16564 * 12 10 8 34 34 H 1.08997 * 109.46897 * 67.16518 * 12 10 8 35 35 H 0.96998 * 120.00239 * 180.27247 * 16 15 13 36 36 H 1.08003 * 119.96329 * 0.02562 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1963 1.1975 0.0000 4 6 3.5858 1.2010 -0.0005 5 7 4.2819 2.4119 -0.0011 6 6 4.2813 -0.0001 0.0061 7 6 3.5859 -1.2009 -0.0001 8 7 4.2820 -2.4118 -0.0002 9 6 5.7420 -2.4175 0.1205 10 6 3.5520 -3.6761 -0.1211 11 1 2.4806 -3.4765 -0.1427 12 6 3.9654 -4.3822 -1.4140 13 6 3.8751 -4.5574 1.0579 14 1 4.6237 -4.2497 1.7730 15 6 3.2150 -5.7565 1.2237 16 7 2.3125 -6.1372 0.3461 17 14 3.5971 -6.8368 2.6991 18 1 4.6058 -7.8575 2.3172 19 1 4.1339 -5.9983 3.8007 20 1 2.3551 -7.5134 3.1519 21 6 2.1961 -1.1972 -0.0005 22 1 -0.3634 -0.0004 1.0277 23 1 -0.3634 0.8901 -0.5135 24 1 -0.3634 -0.8898 -0.5141 25 1 1.6546 2.1317 -0.0004 26 1 3.7953 3.2510 -0.0007 27 1 5.2519 2.4137 -0.0011 28 1 5.3613 -0.0002 0.0109 29 1 6.1889 -2.3701 -0.8724 30 1 6.0617 -1.5544 0.7044 31 1 6.0617 -3.3323 0.6196 32 1 3.3333 -5.2567 -1.5685 33 1 3.8506 -3.6977 -2.2544 34 1 5.0069 -4.6952 -1.3399 35 1 1.8453 -6.9789 0.4649 36 1 1.6542 -2.1315 -0.0014 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000166999473.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:35 Heat of formation + Delta-G solvation = 24.772560 kcal Electronic energy + Delta-G solvation = -16539.802956 eV Core-core repulsion = 14023.423447 eV Total energy + Delta-G solvation = -2516.379509 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 234.143 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.06691 -36.40354 -34.17525 -33.04995 -30.82638 -29.02647 -28.26324 -26.21546 -25.17033 -24.90743 -21.80450 -20.29793 -19.19279 -16.78174 -16.39858 -16.18339 -15.06188 -14.86471 -14.23877 -13.92314 -13.71455 -13.11508 -12.96418 -12.64714 -12.41481 -11.98813 -11.63052 -11.55025 -11.25943 -11.13730 -10.88733 -10.83177 -10.59355 -10.51005 -10.22353 -10.10674 -9.78852 -9.04371 -8.51719 -8.42214 -7.13135 -6.31549 -6.02336 -4.14617 2.24711 2.52015 3.26281 3.33788 3.37605 4.10846 4.34132 4.47187 4.65018 5.23799 5.44757 5.69645 5.82939 5.97717 6.04879 6.14229 6.19751 6.20871 6.24533 6.47310 6.51800 6.53342 6.76471 6.88437 6.94492 7.08165 7.18227 7.30782 7.42295 7.56682 7.66634 7.86096 7.98341 8.13671 8.20758 8.41229 8.70534 8.93601 9.51848 10.97783 Molecular weight = 234.14amu Principal moments of inertia in cm(-1) A = 0.028678 B = 0.007113 C = 0.006449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.134470 B = 3935.672635 C = 4340.504005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.003 4.003 3 C -0.274 4.274 4 C 0.252 3.748 5 N -0.885 5.885 6 C -0.296 4.296 7 C 0.278 3.722 8 N -0.606 5.606 9 C 0.100 3.900 10 C 0.263 3.737 11 H 0.059 0.941 12 C -0.143 4.143 13 C -0.525 4.525 14 H 0.060 0.940 15 C 0.065 3.935 16 N -0.890 5.890 17 Si 0.896 3.104 18 H -0.281 1.281 19 H -0.274 1.274 20 H -0.285 1.285 21 C -0.246 4.246 22 H 0.066 0.934 23 H 0.058 0.942 24 H 0.065 0.935 25 H 0.103 0.897 26 H 0.391 0.609 27 H 0.391 0.609 28 H 0.110 0.890 29 H 0.031 0.969 30 H 0.049 0.951 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.013 0.987 34 H 0.031 0.969 35 H 0.263 0.737 36 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.583 11.668 -1.336 11.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.005 4.005 3 C -0.299 4.299 4 C 0.148 3.852 5 N -0.425 5.425 6 C -0.324 4.324 7 C 0.169 3.831 8 N -0.310 5.310 9 C -0.044 4.044 10 C 0.162 3.838 11 H 0.076 0.924 12 C -0.202 4.202 13 C -0.563 4.563 14 H 0.078 0.922 15 C -0.137 4.137 16 N -0.529 5.529 17 Si 0.723 3.277 18 H -0.207 1.207 19 H -0.199 1.199 20 H -0.211 1.211 21 C -0.270 4.270 22 H 0.084 0.916 23 H 0.077 0.923 24 H 0.084 0.916 25 H 0.121 0.879 26 H 0.218 0.782 27 H 0.218 0.782 28 H 0.128 0.872 29 H 0.050 0.950 30 H 0.068 0.932 31 H 0.092 0.908 32 H 0.098 0.902 33 H 0.032 0.968 34 H 0.050 0.950 35 H 0.073 0.927 36 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 1.540 11.214 -1.375 11.402 hybrid contribution 0.518 -0.365 0.810 1.028 sum 2.057 10.848 -0.565 11.056 Atomic orbital electron populations 1.20753 0.92227 1.01988 1.01810 1.19262 0.94736 0.92231 0.94271 1.19907 0.91612 0.97065 1.21289 1.17344 0.90981 0.85405 0.91471 1.42377 1.08384 1.05142 1.86575 1.19863 0.98449 0.90201 1.23931 1.17639 0.91114 0.85613 0.88741 1.47186 1.04953 1.04213 1.74681 1.21413 0.81769 1.01897 0.99322 1.18931 0.92913 0.78519 0.93409 0.92377 1.22075 1.00521 1.00841 0.96718 1.21395 1.22436 1.03530 1.08983 0.92209 1.24893 0.94852 0.97584 0.96410 1.69911 1.25259 1.22514 1.35171 0.86520 0.77825 0.80457 0.82855 1.20735 1.19901 1.21078 1.20554 0.92428 0.97953 1.16016 0.91571 0.92328 0.91649 0.87881 0.78171 0.78168 0.87158 0.95006 0.93245 0.90837 0.90245 0.96790 0.94999 0.92745 0.85621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.62 10.01 36.00 0.36 -1.25 16 2 C 0.00 -0.06 5.87 -104.68 -0.61 -0.68 16 3 C -0.27 -4.57 9.54 -39.34 -0.38 -4.94 16 4 C 0.25 4.15 6.75 -83.81 -0.57 3.58 16 5 N -0.89 -10.73 9.09 32.40 0.29 -10.43 16 6 C -0.30 -5.46 9.01 -39.18 -0.35 -5.82 16 7 C 0.28 5.86 6.54 -83.82 -0.55 5.31 16 8 N -0.61 -13.40 2.89 -173.35 -0.50 -13.91 16 9 C 0.10 1.90 9.32 59.85 0.56 2.46 16 10 C 0.26 6.57 2.48 -69.08 -0.17 6.40 16 11 H 0.06 1.57 5.30 -51.93 -0.28 1.30 16 12 C -0.14 -3.42 8.90 37.16 0.33 -3.09 16 13 C -0.52 -14.11 8.00 -34.44 -0.28 -14.39 16 14 H 0.06 1.62 6.90 -52.49 -0.36 1.25 16 15 C 0.06 1.76 5.34 -17.82 -0.10 1.66 16 16 N -0.89 -24.82 11.79 55.43 0.65 -24.16 16 17 Si 0.90 21.05 29.54 -169.99 -5.02 16.02 16 18 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 19 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 20 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 21 C -0.25 -5.13 8.96 -39.34 -0.35 -5.49 16 22 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 23 H 0.06 0.73 8.08 -51.93 -0.42 0.31 16 24 H 0.06 0.95 8.08 -51.93 -0.42 0.53 16 25 H 0.10 1.48 8.06 -52.49 -0.42 1.06 16 26 H 0.39 3.85 8.84 -40.82 -0.36 3.49 16 27 H 0.39 4.06 8.84 -40.82 -0.36 3.70 16 28 H 0.11 1.87 6.29 -52.49 -0.33 1.54 16 29 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.05 0.84 6.43 -51.93 -0.33 0.50 16 31 H 0.07 1.46 6.68 -51.93 -0.35 1.11 16 32 H 0.08 2.05 6.69 -51.93 -0.35 1.70 16 33 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16 34 H 0.03 0.73 7.96 -51.93 -0.41 0.32 16 35 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 36 H 0.13 2.83 5.74 -52.48 -0.30 2.53 16 LS Contribution 291.96 15.07 4.40 4.40 Total: -1.00 -28.92 291.96 -7.37 -36.29 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: -5.10 Total: 8.03 kcal Atomic # 6 Polarization: -14.14 SS G_CDS: -2.10 Total: -16.24 kcal Atomic # 7 Polarization: -48.95 SS G_CDS: 0.45 Total: -48.50 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -28.92 -7.37 -36.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166999473.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.061 kcal (2) G-P(sol) polarization free energy of solvation -28.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.288 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds