Wall clock time and date at job start Mon Mar 30 2020 06:26:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38173 * 119.92808 * 2 1 4 4 C 1.38954 * 120.07339 * 180.02562 * 3 2 1 5 5 N 1.39673 * 120.03627 * 179.97438 * 4 3 2 6 6 C 1.38797 * 119.92511 * 359.65825 * 4 3 2 7 7 C 1.38754 * 119.85054 * 0.63708 * 6 4 3 8 8 N 1.39668 * 120.03339 * 179.67987 * 7 6 4 9 9 C 1.46505 * 120.00054 * 5.16930 * 8 7 6 10 10 C 1.46495 * 119.99793 * 185.16730 * 8 7 6 11 11 H 1.09003 * 109.47327 * 356.79986 * 10 8 7 12 12 C 1.53007 * 109.47068 * 116.80051 * 10 8 7 13 13 C 1.50702 * 109.47373 * 236.79891 * 10 8 7 14 14 H 1.08002 * 119.99716 * 354.37749 * 13 10 8 15 15 C 1.37876 * 120.00192 * 174.37918 * 13 10 8 16 16 N 1.31516 * 120.00141 * 0.64435 * 15 13 10 17 17 Si 1.86804 * 120.00003 * 180.92357 * 15 13 10 18 18 H 1.48505 * 109.46876 * 264.72907 * 17 15 13 19 19 H 1.48491 * 109.46963 * 24.72915 * 17 15 13 20 20 H 1.48501 * 109.46823 * 144.73333 * 17 15 13 21 21 C 1.38140 * 119.92468 * 180.02562 * 2 1 3 22 22 H 1.09005 * 109.47192 * 269.97896 * 1 2 3 23 23 H 1.08997 * 109.47357 * 29.97713 * 1 2 3 24 24 H 1.08999 * 109.47260 * 149.98016 * 1 2 3 25 25 H 1.07994 * 119.96296 * 359.97438 * 3 2 1 26 26 H 0.96996 * 119.99456 * 0.02562 * 5 4 3 27 27 H 0.96999 * 119.99813 * 179.97438 * 5 4 3 28 28 H 1.07998 * 120.07354 * 180.31604 * 6 4 3 29 29 H 1.08990 * 109.47129 * 269.99680 * 9 8 7 30 30 H 1.08996 * 109.47260 * 30.00252 * 9 8 7 31 31 H 1.09002 * 109.46863 * 149.99749 * 9 8 7 32 32 H 1.09003 * 109.46723 * 187.16311 * 12 10 8 33 33 H 1.08999 * 109.46825 * 307.16564 * 12 10 8 34 34 H 1.08997 * 109.46897 * 67.16518 * 12 10 8 35 35 H 0.96998 * 120.00239 * 180.27247 * 16 15 13 36 36 H 1.08003 * 119.96329 * 0.02562 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1963 1.1975 0.0000 4 6 3.5858 1.2010 -0.0005 5 7 4.2819 2.4119 -0.0011 6 6 4.2813 -0.0001 0.0061 7 6 3.5859 -1.2009 -0.0001 8 7 4.2820 -2.4118 -0.0002 9 6 5.7420 -2.4175 0.1205 10 6 3.5520 -3.6761 -0.1211 11 1 2.4806 -3.4765 -0.1427 12 6 3.9654 -4.3822 -1.4140 13 6 3.8751 -4.5574 1.0579 14 1 4.6237 -4.2497 1.7730 15 6 3.2150 -5.7565 1.2237 16 7 2.3125 -6.1372 0.3461 17 14 3.5971 -6.8368 2.6991 18 1 4.6058 -7.8575 2.3172 19 1 4.1339 -5.9983 3.8007 20 1 2.3551 -7.5134 3.1519 21 6 2.1961 -1.1972 -0.0005 22 1 -0.3634 -0.0004 1.0277 23 1 -0.3634 0.8901 -0.5135 24 1 -0.3634 -0.8898 -0.5141 25 1 1.6546 2.1317 -0.0004 26 1 3.7953 3.2510 -0.0007 27 1 5.2519 2.4137 -0.0011 28 1 5.3613 -0.0002 0.0109 29 1 6.1889 -2.3701 -0.8724 30 1 6.0617 -1.5544 0.7044 31 1 6.0617 -3.3323 0.6196 32 1 3.3333 -5.2567 -1.5685 33 1 3.8506 -3.6977 -2.2544 34 1 5.0069 -4.6952 -1.3399 35 1 1.8453 -6.9789 0.4649 36 1 1.6542 -2.1315 -0.0014 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000166999473.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:35 Heat of formation + Delta-G solvation = 7.512585 kcal Electronic energy + Delta-G solvation = -16540.551405 eV Core-core repulsion = 14023.423447 eV Total energy + Delta-G solvation = -2517.127958 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 234.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.51055 -38.00549 -35.45112 -34.92605 -32.46957 -30.68949 -29.60703 -27.59664 -27.23032 -26.42025 -23.44742 -21.70268 -20.82782 -18.54821 -17.95064 -17.57491 -16.79113 -16.32711 -15.77610 -15.48785 -15.29823 -14.53274 -14.41260 -14.18973 -14.02126 -13.50239 -13.22736 -13.07044 -12.86654 -12.81855 -12.65757 -12.51323 -12.40480 -12.17656 -11.90780 -11.68526 -11.42230 -10.94602 -10.51147 -9.95585 -8.45375 -8.18844 -7.75105 -6.27756 0.83878 1.08315 1.39744 1.41295 1.51540 2.37753 2.67189 3.13938 3.22390 3.22565 4.12105 4.35967 4.55316 4.57319 4.63865 4.74716 4.77587 4.86296 4.90341 4.91434 4.98410 5.02058 5.12167 5.20813 5.26701 5.47150 5.55713 5.64826 5.67885 5.85468 6.04734 6.08498 6.20951 6.59993 6.76177 6.95077 7.07718 7.20861 7.43291 8.90978 Molecular weight = 234.14amu Principal moments of inertia in cm(-1) A = 0.028678 B = 0.007113 C = 0.006449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.134470 B = 3935.672635 C = 4340.504005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.006 4.006 3 C -0.272 4.272 4 C 0.259 3.741 5 N -0.865 5.865 6 C -0.304 4.304 7 C 0.252 3.748 8 N -0.621 5.621 9 C 0.102 3.898 10 C 0.269 3.731 11 H 0.029 0.971 12 C -0.128 4.128 13 C -0.537 4.537 14 H 0.053 0.947 15 C 0.019 3.981 16 N -0.917 5.917 17 Si 0.958 3.042 18 H -0.273 1.273 19 H -0.273 1.273 20 H -0.282 1.282 21 C -0.283 4.283 22 H 0.075 0.925 23 H 0.086 0.914 24 H 0.056 0.944 25 H 0.134 0.866 26 H 0.407 0.593 27 H 0.403 0.597 28 H 0.124 0.876 29 H 0.045 0.955 30 H 0.070 0.930 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.023 0.977 34 H 0.034 0.966 35 H 0.264 0.736 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.224 13.922 -0.868 14.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.007 4.007 3 C -0.297 4.297 4 C 0.152 3.848 5 N -0.405 5.405 6 C -0.332 4.332 7 C 0.146 3.854 8 N -0.327 5.327 9 C -0.041 4.041 10 C 0.166 3.834 11 H 0.047 0.953 12 C -0.187 4.187 13 C -0.576 4.576 14 H 0.072 0.928 15 C -0.181 4.181 16 N -0.556 5.556 17 Si 0.784 3.216 18 H -0.198 1.198 19 H -0.198 1.198 20 H -0.208 1.208 21 C -0.307 4.307 22 H 0.094 0.906 23 H 0.105 0.895 24 H 0.075 0.925 25 H 0.152 0.848 26 H 0.236 0.764 27 H 0.232 0.768 28 H 0.142 0.858 29 H 0.063 0.937 30 H 0.088 0.912 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.042 0.958 34 H 0.054 0.946 35 H 0.073 0.927 36 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 2.205 13.539 -0.910 13.748 hybrid contribution 0.293 -0.891 0.645 1.138 sum 2.498 12.648 -0.265 12.895 Atomic orbital electron populations 1.20803 0.90125 1.02979 1.02714 1.19620 0.96463 0.91699 0.92930 1.20263 0.91961 0.97636 1.19822 1.17447 0.91264 0.86251 0.89818 1.42303 1.09141 1.04303 1.84773 1.19996 0.99179 0.89905 1.24094 1.17930 0.91384 0.86101 0.90024 1.47044 1.05875 1.03616 1.76212 1.21472 0.80227 1.02090 1.00288 1.18591 0.91820 0.79849 0.93121 0.95318 1.21876 0.99991 0.99965 0.96847 1.21642 1.22286 1.04127 1.09560 0.92830 1.25646 0.94721 0.98832 0.98914 1.70029 1.26018 1.22913 1.36648 0.85545 0.77728 0.78742 0.79620 1.19845 1.19783 1.20775 1.20508 0.92856 0.97950 1.19401 0.90601 0.89501 0.92495 0.84770 0.76361 0.76795 0.85769 0.93687 0.91168 0.92256 0.92524 0.95827 0.94640 0.92669 0.88892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.06 10.01 71.23 0.71 -2.34 16 2 C -0.01 -0.20 5.87 -19.90 -0.12 -0.31 16 3 C -0.27 -8.29 9.54 22.43 0.21 -8.07 16 4 C 0.26 7.77 6.75 38.20 0.26 8.03 16 5 N -0.87 -17.39 9.09 -51.41 -0.47 -17.86 16 6 C -0.30 -10.71 9.01 22.53 0.20 -10.51 16 7 C 0.25 10.77 6.54 38.20 0.25 11.02 16 8 N -0.62 -28.06 2.89 -702.35 -2.03 -30.09 16 9 C 0.10 3.86 9.32 127.77 1.19 5.05 16 10 C 0.27 13.97 2.48 44.25 0.11 14.08 16 11 H 0.03 1.67 5.30 -2.39 -0.01 1.66 16 12 C -0.13 -6.34 8.90 71.98 0.64 -5.70 16 13 C -0.54 -29.75 8.00 25.60 0.20 -29.54 16 14 H 0.05 2.96 6.90 -2.91 -0.02 2.94 16 15 C 0.02 1.02 5.34 84.65 0.45 1.47 16 16 N -0.92 -52.66 11.79 21.45 0.25 -52.41 16 17 Si 0.96 43.74 29.54 68.60 2.03 45.76 16 18 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 19 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 20 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 21 C -0.28 -12.23 8.96 22.43 0.20 -12.03 16 22 H 0.08 1.97 8.14 -2.38 -0.02 1.95 16 23 H 0.09 1.91 8.08 -2.39 -0.02 1.89 16 24 H 0.06 1.66 8.08 -2.39 -0.02 1.64 16 25 H 0.13 3.23 8.06 -2.91 -0.02 3.20 16 26 H 0.41 6.09 8.84 -92.71 -0.82 5.27 16 27 H 0.40 6.69 8.84 -92.71 -0.82 5.87 16 28 H 0.12 3.92 6.29 -2.91 -0.02 3.90 16 29 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.07 2.30 6.43 -2.39 -0.02 2.28 16 31 H 0.06 2.36 6.68 -2.39 -0.02 2.35 16 32 H 0.06 3.03 6.69 -2.39 -0.02 3.01 16 33 H 0.02 1.06 8.14 -2.39 -0.02 1.05 16 34 H 0.03 1.67 7.96 -2.39 -0.02 1.65 16 35 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 36 H 0.09 4.55 5.74 -2.91 -0.02 4.53 16 Total: -1.00 -63.55 291.96 3.56 -59.99 By element: Atomic # 1 Polarization: 24.00 SS G_CDS: -0.54 Total: 23.46 kcal Atomic # 6 Polarization: -33.17 SS G_CDS: 4.32 Total: -28.85 kcal Atomic # 7 Polarization: -98.11 SS G_CDS: -2.24 Total: -100.35 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.76 kcal Total: -63.55 3.56 -59.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166999473.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.499 kcal (2) G-P(sol) polarization free energy of solvation -63.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.987 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds