Wall clock time and date at job start Mon Mar 30 2020 06:15:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30756 * 1 3 3 Si 1.86798 * 120.00294 * 2 1 4 4 H 1.48495 * 109.47195 * 269.99808 * 3 2 1 5 5 H 1.48493 * 109.46967 * 30.00255 * 3 2 1 6 6 H 1.48504 * 109.47154 * 150.00043 * 3 2 1 7 7 C 1.40175 * 119.99642 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99550 * 180.02562 * 7 2 1 9 9 C 1.40238 * 119.99971 * 359.97438 * 7 2 1 10 10 C 1.39802 * 126.66126 * 0.17850 * 9 7 2 11 11 C 1.38699 * 107.53419 * 180.26438 * 10 9 7 12 12 N 1.31231 * 109.08130 * 359.74031 * 11 10 9 13 13 N 1.37454 * 126.65926 * 180.02562 * 9 7 2 14 14 C 1.46510 * 126.20344 * 359.97438 * 13 9 7 15 15 C 1.52996 * 109.47178 * 269.71909 * 14 13 9 16 16 C 1.53002 * 109.46891 * 175.00152 * 15 14 13 17 17 C 1.52996 * 109.46891 * 179.97438 * 16 15 14 18 18 C 1.53000 * 109.47328 * 299.99597 * 17 16 15 19 19 C 1.52997 * 109.47060 * 60.00126 * 18 17 16 20 20 C 1.52997 * 109.46975 * 294.99744 * 15 14 13 21 21 H 0.97001 * 119.99974 * 0.02562 * 1 2 3 22 22 H 1.08003 * 126.23156 * 359.97438 * 10 9 7 23 23 H 1.07999 * 125.46100 * 179.72765 * 11 10 9 24 24 H 1.08998 * 109.46730 * 149.71515 * 14 13 9 25 25 H 1.09001 * 109.46782 * 29.71788 * 14 13 9 26 26 H 1.09001 * 109.47372 * 55.00116 * 15 14 13 27 27 H 1.08992 * 109.47056 * 59.99654 * 16 15 14 28 28 H 1.09004 * 109.47006 * 299.99770 * 16 15 14 29 29 H 1.09004 * 109.47368 * 179.97438 * 17 16 15 30 30 H 1.09001 * 109.47372 * 59.99964 * 17 16 15 31 31 H 1.09002 * 109.47398 * 180.02562 * 18 17 16 32 32 H 1.09001 * 109.47194 * 300.00476 * 18 17 16 33 33 H 1.08998 * 109.47533 * 59.99948 * 19 18 17 34 34 H 1.08996 * 109.47853 * 180.02562 * 19 18 17 35 35 H 1.09001 * 109.47375 * 300.00370 * 20 15 14 36 36 H 1.09000 * 109.47140 * 60.00388 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3076 0.0000 0.0000 3 14 2.2416 1.6177 0.0000 4 1 2.4892 2.0463 -1.4000 5 1 1.4392 2.6526 0.7001 6 1 3.5392 1.4400 0.7000 7 6 2.0084 -1.2140 -0.0005 8 1 3.0883 -1.2140 -0.0001 9 6 1.3071 -2.4284 -0.0005 10 6 -0.0815 -2.5905 -0.0035 11 6 -0.3432 -3.9526 0.0038 12 7 0.7937 -4.6079 0.0053 13 7 1.8516 -3.6905 -0.0005 14 6 3.2799 -4.0168 -0.0011 15 6 3.7749 -4.1375 -1.4437 16 6 5.2895 -4.3545 -1.4466 17 6 5.7844 -4.4759 -2.8892 18 6 5.0977 -5.6640 -3.5658 19 6 3.5832 -5.4470 -3.5629 20 6 3.0882 -5.3253 -2.1208 21 1 -0.4850 0.8401 -0.0004 22 1 -0.8165 -1.7992 -0.0059 23 1 -1.3253 -4.4019 0.0078 24 1 3.4366 -4.9627 0.5173 25 1 3.8330 -3.2275 0.5080 26 1 3.5379 -3.2227 -1.9870 27 1 5.5265 -5.2692 -0.9034 28 1 5.7787 -3.5083 -0.9642 29 1 6.8635 -4.6301 -2.8915 30 1 5.5474 -3.5614 -3.4329 31 1 5.4507 -5.7507 -4.5935 32 1 5.3348 -6.5785 -3.0222 33 1 3.3460 -4.5325 -4.1065 34 1 3.0938 -6.2936 -4.0444 35 1 3.3253 -6.2401 -1.5775 36 1 2.0093 -5.1707 -2.1187 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214474136.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:50 Heat of formation + Delta-G solvation = 18.218339 kcal Electronic energy + Delta-G solvation = -16787.806114 eV Core-core repulsion = 14271.142392 eV Total energy + Delta-G solvation = -2516.663722 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 234.143 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.94192 -39.32414 -35.56921 -34.47127 -31.64839 -31.37155 -30.22004 -27.09722 -26.38726 -23.46486 -22.54565 -21.56650 -20.75814 -20.54060 -18.69373 -17.37846 -16.52291 -15.94397 -15.59802 -15.18538 -14.98211 -14.66923 -14.37678 -14.12854 -13.80790 -13.44606 -13.10437 -13.05501 -13.01968 -12.80303 -12.44990 -12.17254 -12.01137 -11.85610 -11.71681 -11.37266 -11.28398 -11.09907 -10.88779 -10.65551 -9.66579 -8.74210 -8.51273 -6.46841 1.27307 1.40468 1.55315 1.79703 2.17114 2.45378 2.57781 3.36756 3.70675 3.83844 3.89494 4.11353 4.31283 4.40645 4.45608 4.51878 4.62463 4.64584 4.68245 4.78221 4.84306 5.04762 5.12291 5.17523 5.24150 5.28285 5.31266 5.36929 5.43575 5.51261 5.56632 5.62239 5.92500 6.10512 6.52718 6.76030 6.87291 7.28578 7.70501 8.40445 Molecular weight = 234.14amu Principal moments of inertia in cm(-1) A = 0.023443 B = 0.008388 C = 0.006773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.089798 B = 3337.378074 C = 4132.852815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.032 3.968 3 Si 0.999 3.001 4 H -0.262 1.262 5 H -0.267 1.267 6 H -0.255 1.255 7 C -0.475 4.475 8 H 0.081 0.919 9 C 0.227 3.773 10 C -0.397 4.397 11 C 0.028 3.972 12 N -0.398 5.398 13 N -0.428 5.428 14 C 0.153 3.847 15 C -0.093 4.093 16 C -0.105 4.105 17 C -0.115 4.115 18 C -0.112 4.112 19 C -0.116 4.116 20 C -0.101 4.101 21 H 0.286 0.714 22 H 0.142 0.858 23 H 0.171 0.829 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.044 0.956 27 H 0.075 0.925 28 H 0.068 0.932 29 H 0.084 0.916 30 H 0.052 0.948 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.045 0.955 34 H 0.064 0.936 35 H 0.060 0.940 36 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.708 -3.757 -4.619 12.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C -0.184 4.184 3 Si 0.818 3.182 4 H -0.187 1.187 5 H -0.191 1.191 6 H -0.178 1.178 7 C -0.511 4.511 8 H 0.099 0.901 9 C 0.107 3.893 10 C -0.428 4.428 11 C -0.153 4.153 12 N -0.220 5.220 13 N -0.216 5.216 14 C 0.031 3.969 15 C -0.112 4.112 16 C -0.143 4.143 17 C -0.153 4.153 18 C -0.149 4.149 19 C -0.154 4.154 20 C -0.139 4.139 21 H 0.097 0.903 22 H 0.159 0.841 23 H 0.188 0.812 24 H 0.097 0.903 25 H 0.095 0.905 26 H 0.063 0.937 27 H 0.093 0.907 28 H 0.087 0.913 29 H 0.103 0.897 30 H 0.071 0.929 31 H 0.093 0.907 32 H 0.088 0.912 33 H 0.064 0.936 34 H 0.083 0.917 35 H 0.079 0.921 36 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 11.133 -4.872 -4.598 12.993 hybrid contribution -0.846 1.529 0.138 1.753 sum 10.287 -3.342 -4.460 11.700 Atomic orbital electron populations 1.69826 1.09038 1.29911 1.35656 1.26804 0.95719 1.04460 0.91432 0.84953 0.78747 0.74994 0.79466 1.18720 1.19114 1.17816 1.18950 0.94534 0.89305 1.48324 0.90084 1.19134 0.92664 0.85214 0.92278 1.22199 0.95651 0.95303 1.29686 1.23498 0.96917 0.94177 1.00686 1.76738 0.94228 1.16829 1.34227 1.48776 1.04726 1.03128 1.64976 1.21432 0.76676 1.01066 0.97740 1.21462 0.96863 0.98222 0.94688 1.21502 0.92151 1.02494 0.98181 1.21515 1.00552 0.98379 0.94827 1.21511 0.93531 0.98639 1.01227 1.21513 0.97401 1.00990 0.95489 1.21374 0.98700 0.97373 0.96409 0.90300 0.84090 0.81213 0.90340 0.90479 0.93735 0.90667 0.91314 0.89745 0.92924 0.90706 0.91211 0.93625 0.91711 0.92118 0.95031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.42 10.30 21.87 0.23 -43.20 16 2 C 0.03 1.63 5.50 85.32 0.47 2.10 16 3 Si 1.00 37.77 29.56 68.60 2.03 39.80 16 4 H -0.26 -9.59 7.11 99.48 0.71 -8.88 16 5 H -0.27 -9.61 7.11 99.48 0.71 -8.90 16 6 H -0.25 -9.20 7.11 99.48 0.71 -8.49 16 7 C -0.48 -25.62 9.02 23.23 0.21 -25.41 16 8 H 0.08 4.07 7.20 -2.91 -0.02 4.05 16 9 C 0.23 12.89 6.75 39.13 0.26 13.16 16 10 C -0.40 -22.96 9.77 22.76 0.22 -22.74 16 11 C 0.03 1.48 11.93 84.89 1.01 2.49 16 12 N -0.40 -20.81 11.61 -57.58 -0.67 -21.48 16 13 N -0.43 -21.85 3.29 -339.36 -1.12 -22.97 16 14 C 0.15 6.18 5.64 86.38 0.49 6.67 16 15 C -0.09 -3.24 2.40 -10.80 -0.03 -3.27 16 16 C -0.11 -2.69 5.20 30.59 0.16 -2.53 16 17 C -0.12 -2.53 5.92 30.59 0.18 -2.35 16 18 C -0.11 -2.41 5.92 30.59 0.18 -2.23 16 19 C -0.12 -3.27 5.92 30.58 0.18 -3.09 16 20 C -0.10 -3.50 5.05 30.58 0.15 -3.35 16 21 H 0.29 13.64 8.29 -92.71 -0.77 12.87 16 22 H 0.14 8.47 5.73 -2.91 -0.02 8.45 16 23 H 0.17 7.57 8.06 -2.91 -0.02 7.55 16 24 H 0.08 2.94 8.14 -2.39 -0.02 2.92 16 25 H 0.08 3.01 7.39 -2.39 -0.02 2.99 16 26 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 27 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 29 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.03 1.36 6.95 -2.39 -0.02 1.34 16 Total: -1.00 -63.98 288.31 5.01 -58.97 By element: Atomic # 1 Polarization: 28.37 SS G_CDS: 1.04 Total: 29.42 kcal Atomic # 6 Polarization: -44.04 SS G_CDS: 3.50 Total: -40.54 kcal Atomic # 7 Polarization: -86.09 SS G_CDS: -1.56 Total: -87.64 kcal Atomic # 14 Polarization: 37.77 SS G_CDS: 2.03 Total: 39.80 kcal Total: -63.98 5.01 -58.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214474136.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.188 kcal (2) G-P(sol) polarization free energy of solvation -63.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.970 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds