Wall clock time and date at job start Mon Mar 30 2020 05:11:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35643 * 116.99597 * 2 1 4 4 C 1.41345 * 120.26808 * 74.62464 * 3 2 1 5 5 C 1.41166 * 120.28645 * 359.97438 * 4 3 2 6 6 H 1.07992 * 119.99856 * 23.84092 * 5 4 3 7 7 C 1.39933 * 119.99526 * 203.84387 * 5 4 3 8 8 N 1.30866 * 120.00479 * 20.64006 * 7 5 4 9 9 Si 1.86805 * 119.99430 * 200.64017 * 7 5 4 10 10 H 1.48496 * 109.47219 * 94.96373 * 9 7 5 11 11 H 1.48498 * 109.46739 * 214.95772 * 9 7 5 12 12 H 1.48494 * 109.47344 * 334.95863 * 9 7 5 13 13 C 1.40686 * 119.42340 * 180.02562 * 4 3 2 14 14 C 1.36524 * 119.93086 * 359.97438 * 13 4 3 15 15 C 1.38776 * 120.53350 * 0.28132 * 14 13 4 16 16 C 1.38347 * 120.59378 * 359.43928 * 15 14 13 17 17 C 1.50701 * 119.97801 * 180.28293 * 16 15 14 18 18 C 1.53004 * 109.47012 * 4.67772 * 17 16 15 19 19 C 1.53001 * 109.47432 * 124.67282 * 17 16 15 20 20 C 1.52998 * 109.46913 * 244.67844 * 17 16 15 21 21 H 1.08995 * 109.47063 * 293.17355 * 1 2 3 22 22 H 1.09004 * 109.47134 * 53.17740 * 1 2 3 23 23 H 1.09000 * 109.46808 * 173.17327 * 1 2 3 24 24 H 0.97001 * 120.00386 * 180.02562 * 8 7 5 25 25 H 1.08007 * 120.03769 * 180.02562 * 13 4 3 26 26 H 1.07999 * 119.73328 * 180.02562 * 14 13 4 27 27 H 1.08008 * 119.70288 * 179.70642 * 15 14 13 28 28 H 1.09000 * 109.47329 * 60.00044 * 18 17 16 29 29 H 1.08993 * 109.47484 * 180.02562 * 18 17 16 30 30 H 1.09005 * 109.46909 * 300.00040 * 18 17 16 31 31 H 1.09004 * 109.46595 * 60.00497 * 19 17 16 32 32 H 1.09002 * 109.46902 * 179.97438 * 19 17 16 33 33 H 1.09000 * 109.47300 * 300.00195 * 19 17 16 34 34 H 1.08997 * 109.47031 * 49.60115 * 20 17 16 35 35 H 1.09001 * 109.46890 * 169.59729 * 20 17 16 36 36 H 1.09001 * 109.46901 * 289.59566 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2086 0.0000 4 6 2.0797 1.9904 1.1771 5 6 1.4738 1.5202 2.3622 6 1 1.3278 0.4605 2.5103 7 6 1.0624 2.4274 3.3450 8 7 0.8567 3.6816 3.0331 9 14 0.8069 1.8480 5.1025 10 1 2.0407 2.0976 5.8903 11 1 -0.3264 2.5917 5.7089 12 1 0.5033 0.3945 5.1054 13 6 2.7227 3.2415 1.1569 14 6 3.3058 3.6893 0.0066 15 6 3.2655 2.9222 -1.1492 16 6 2.6441 1.6861 -1.1526 17 6 2.6141 0.8619 -2.4138 18 6 3.4342 1.5612 -3.4998 19 6 3.2101 -0.5194 -2.1348 20 6 1.1675 0.7070 -2.8875 21 1 -0.3633 0.4044 0.9447 22 1 -0.3633 0.6159 -0.8227 23 1 -0.3633 -1.0204 -0.1222 24 1 0.5719 4.3105 3.7144 25 1 2.7557 3.8469 2.0508 26 1 3.7989 4.6501 -0.0052 27 1 3.7271 3.2916 -2.0531 28 1 4.4648 1.6716 -3.1623 29 1 3.4122 0.9654 -4.4121 30 1 3.0096 2.5453 -3.6986 31 1 2.6258 -1.0176 -1.3612 32 1 3.1879 -1.1157 -3.0470 33 1 4.2407 -0.4090 -1.7974 34 1 0.6858 1.6845 -2.9092 35 1 1.1572 0.2746 -3.8879 36 1 0.6292 0.0517 -2.2027 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000215168985.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:11:31 Heat of formation + Delta-G solvation = -35.424243 kcal Electronic energy + Delta-G solvation = -17238.776748 eV Core-core repulsion = 14687.494159 eV Total energy + Delta-G solvation = -2551.282590 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 234.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.07892 -36.05864 -35.56197 -33.32626 -29.43925 -28.48833 -27.05271 -26.81610 -25.81107 -24.56580 -21.59643 -20.32615 -18.75444 -16.80606 -16.21850 -15.34157 -14.68147 -14.53004 -14.26760 -13.59820 -13.28230 -13.03215 -12.77899 -12.60226 -11.88761 -11.74019 -11.52678 -11.34982 -11.21680 -11.05306 -10.99505 -10.62988 -10.52479 -10.47148 -10.15556 -10.05138 -9.71473 -9.47279 -9.15560 -8.49519 -7.34970 -7.14502 -6.78395 -4.34135 2.72497 2.88656 3.05492 3.09872 3.21264 3.90455 4.54146 5.03846 5.42348 5.53332 5.56799 5.81016 6.07817 6.10924 6.17140 6.23037 6.26826 6.29846 6.35915 6.44720 6.47753 6.57624 6.66492 6.67470 6.72601 6.92846 7.03312 7.06174 7.27767 7.27951 7.46327 7.78937 7.98450 8.11746 8.25128 8.45043 8.75936 8.83747 9.19820 10.12016 Molecular weight = 234.14amu Principal moments of inertia in cm(-1) A = 0.033456 B = 0.008839 C = 0.007625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.722604 B = 3167.120989 C = 3671.192143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.322 6.322 3 C -0.026 4.026 4 C 0.093 3.907 5 C -0.451 4.451 6 H 0.083 0.917 7 C 0.076 3.924 8 N -0.788 5.788 9 Si 0.905 3.095 10 H -0.268 1.268 11 H -0.278 1.278 12 H -0.261 1.261 13 C -0.159 4.159 14 C -0.109 4.109 15 C -0.233 4.233 16 C -0.054 4.054 17 C -0.018 4.018 18 C -0.136 4.136 19 C -0.136 4.136 20 C -0.140 4.140 21 H 0.049 0.951 22 H 0.032 0.968 23 H 0.065 0.935 24 H 0.281 0.719 25 H 0.115 0.885 26 H 0.087 0.913 27 H 0.096 0.904 28 H 0.053 0.947 29 H 0.043 0.957 30 H 0.053 0.947 31 H 0.078 0.922 32 H 0.038 0.962 33 H 0.045 0.955 34 H 0.048 0.952 35 H 0.042 0.958 36 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.253 -3.142 -5.282 6.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.239 6.239 3 C -0.070 4.070 4 C 0.090 3.910 5 C -0.480 4.480 6 H 0.101 0.899 7 C -0.142 4.142 8 N -0.413 5.413 9 Si 0.730 3.270 10 H -0.193 1.193 11 H -0.203 1.203 12 H -0.184 1.184 13 C -0.179 4.179 14 C -0.127 4.127 15 C -0.252 4.252 16 C -0.054 4.054 17 C -0.018 4.018 18 C -0.193 4.193 19 C -0.193 4.193 20 C -0.197 4.197 21 H 0.068 0.932 22 H 0.051 0.949 23 H 0.084 0.916 24 H 0.092 0.908 25 H 0.133 0.867 26 H 0.105 0.895 27 H 0.114 0.886 28 H 0.072 0.928 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.096 0.904 32 H 0.057 0.943 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.061 0.939 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.237 -3.093 -5.182 6.039 hybrid contribution -0.363 0.247 0.896 0.998 sum -0.126 -2.846 -4.286 5.146 Atomic orbital electron populations 1.22837 0.83210 0.99947 1.00719 1.85882 1.17507 1.26650 1.93811 1.18361 1.06159 0.90281 0.92207 1.17881 0.90261 0.91357 0.91489 1.19495 1.33909 0.94806 0.99780 0.89881 1.25954 0.92808 0.94423 1.01022 1.69868 1.31836 1.04216 1.35345 0.86340 0.78641 0.80222 0.81832 1.19273 1.20344 1.18438 1.20919 1.00933 0.98439 0.97575 1.20427 1.00243 0.97965 0.94083 1.20251 1.10939 0.96133 0.97908 1.19384 1.00056 0.93846 0.92162 1.19256 0.94910 0.94749 0.92894 1.21910 0.99988 0.99998 0.97390 1.21924 1.00840 0.95637 1.00871 1.21995 0.96395 1.01492 0.99837 0.93202 0.94924 0.91614 0.90839 0.86691 0.89518 0.88614 0.92778 0.93793 0.92803 0.90360 0.94321 0.93558 0.93323 0.93875 0.91451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 9.54 101.05 0.96 1.51 16 2 O -0.32 -7.30 6.43 -18.63 -0.12 -7.42 16 3 C -0.03 -0.63 5.45 -38.34 -0.21 -0.84 16 4 C 0.09 2.47 5.56 -106.68 -0.59 1.88 16 5 C -0.45 -11.86 7.40 -37.84 -0.28 -12.14 16 6 H 0.08 2.18 7.50 -52.49 -0.39 1.79 16 7 C 0.08 1.90 5.08 -17.33 -0.09 1.81 16 8 N -0.79 -20.08 11.09 55.55 0.62 -19.46 16 9 Si 0.91 18.64 29.61 -169.99 -5.03 13.60 16 10 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 11 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 12 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 13 C -0.16 -4.14 8.65 -39.28 -0.34 -4.48 16 14 C -0.11 -2.56 9.97 -40.00 -0.40 -2.96 16 15 C -0.23 -5.21 9.00 -39.34 -0.35 -5.57 16 16 C -0.05 -1.21 4.74 -104.52 -0.50 -1.70 16 17 C -0.02 -0.33 0.75 -155.66 -0.12 -0.45 16 18 C -0.14 -2.18 7.12 37.16 0.26 -1.91 16 19 C -0.14 -2.39 8.19 37.16 0.30 -2.09 16 20 C -0.14 -2.41 7.83 37.16 0.29 -2.12 16 21 H 0.05 1.07 6.87 -51.93 -0.36 0.71 16 22 H 0.03 0.62 6.52 -51.93 -0.34 0.28 16 23 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 24 H 0.28 6.51 8.30 -40.82 -0.34 6.17 16 25 H 0.12 3.07 6.21 -52.48 -0.33 2.74 16 26 H 0.09 1.83 8.06 -52.49 -0.42 1.40 16 27 H 0.10 1.91 5.87 -52.48 -0.31 1.60 16 28 H 0.05 0.86 7.73 -51.93 -0.40 0.46 16 29 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.05 0.86 7.29 -51.93 -0.38 0.48 16 31 H 0.08 1.50 5.80 -51.93 -0.30 1.20 16 32 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.05 0.86 8.10 -51.93 -0.42 0.44 16 35 H 0.04 0.63 8.11 -51.93 -0.42 0.21 16 36 H 0.07 1.18 4.51 -51.93 -0.23 0.95 16 LS Contribution 281.16 15.07 4.24 4.24 Total: -1.00 -26.97 281.16 -6.48 -33.45 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -5.13 Total: 4.65 kcal Atomic # 6 Polarization: -28.00 SS G_CDS: -1.05 Total: -29.05 kcal Atomic # 7 Polarization: -20.08 SS G_CDS: 0.62 Total: -19.46 kcal Atomic # 8 Polarization: -7.30 SS G_CDS: -0.12 Total: -7.42 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -5.03 Total: 13.60 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -26.97 -6.48 -33.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215168985.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.977 kcal (2) G-P(sol) polarization free energy of solvation -26.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds