Wall clock time and date at job start Mon Mar 30 2020 05:11:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35643 * 116.99597 * 2 1 4 4 C 1.41345 * 120.26808 * 74.62464 * 3 2 1 5 5 C 1.41166 * 120.28645 * 359.97438 * 4 3 2 6 6 H 1.07992 * 119.99856 * 23.84092 * 5 4 3 7 7 C 1.39933 * 119.99526 * 203.84387 * 5 4 3 8 8 N 1.30866 * 120.00479 * 20.64006 * 7 5 4 9 9 Si 1.86805 * 119.99430 * 200.64017 * 7 5 4 10 10 H 1.48496 * 109.47219 * 94.96373 * 9 7 5 11 11 H 1.48498 * 109.46739 * 214.95772 * 9 7 5 12 12 H 1.48494 * 109.47344 * 334.95863 * 9 7 5 13 13 C 1.40686 * 119.42340 * 180.02562 * 4 3 2 14 14 C 1.36524 * 119.93086 * 359.97438 * 13 4 3 15 15 C 1.38776 * 120.53350 * 0.28132 * 14 13 4 16 16 C 1.38347 * 120.59378 * 359.43928 * 15 14 13 17 17 C 1.50701 * 119.97801 * 180.28293 * 16 15 14 18 18 C 1.53004 * 109.47012 * 4.67772 * 17 16 15 19 19 C 1.53001 * 109.47432 * 124.67282 * 17 16 15 20 20 C 1.52998 * 109.46913 * 244.67844 * 17 16 15 21 21 H 1.08995 * 109.47063 * 293.17355 * 1 2 3 22 22 H 1.09004 * 109.47134 * 53.17740 * 1 2 3 23 23 H 1.09000 * 109.46808 * 173.17327 * 1 2 3 24 24 H 0.97001 * 120.00386 * 180.02562 * 8 7 5 25 25 H 1.08007 * 120.03769 * 180.02562 * 13 4 3 26 26 H 1.07999 * 119.73328 * 180.02562 * 14 13 4 27 27 H 1.08008 * 119.70288 * 179.70642 * 15 14 13 28 28 H 1.09000 * 109.47329 * 60.00044 * 18 17 16 29 29 H 1.08993 * 109.47484 * 180.02562 * 18 17 16 30 30 H 1.09005 * 109.46909 * 300.00040 * 18 17 16 31 31 H 1.09004 * 109.46595 * 60.00497 * 19 17 16 32 32 H 1.09002 * 109.46902 * 179.97438 * 19 17 16 33 33 H 1.09000 * 109.47300 * 300.00195 * 19 17 16 34 34 H 1.08997 * 109.47031 * 49.60115 * 20 17 16 35 35 H 1.09001 * 109.46890 * 169.59729 * 20 17 16 36 36 H 1.09001 * 109.46901 * 289.59566 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2086 0.0000 4 6 2.0797 1.9904 1.1771 5 6 1.4738 1.5202 2.3622 6 1 1.3278 0.4605 2.5103 7 6 1.0624 2.4274 3.3450 8 7 0.8567 3.6816 3.0331 9 14 0.8069 1.8480 5.1025 10 1 2.0407 2.0976 5.8903 11 1 -0.3264 2.5917 5.7089 12 1 0.5033 0.3945 5.1054 13 6 2.7227 3.2415 1.1569 14 6 3.3058 3.6893 0.0066 15 6 3.2655 2.9222 -1.1492 16 6 2.6441 1.6861 -1.1526 17 6 2.6141 0.8619 -2.4138 18 6 3.4342 1.5612 -3.4998 19 6 3.2101 -0.5194 -2.1348 20 6 1.1675 0.7070 -2.8875 21 1 -0.3633 0.4044 0.9447 22 1 -0.3633 0.6159 -0.8227 23 1 -0.3633 -1.0204 -0.1222 24 1 0.5719 4.3105 3.7144 25 1 2.7557 3.8469 2.0508 26 1 3.7989 4.6501 -0.0052 27 1 3.7271 3.2916 -2.0531 28 1 4.4648 1.6716 -3.1623 29 1 3.4122 0.9654 -4.4121 30 1 3.0096 2.5453 -3.6986 31 1 2.6258 -1.0176 -1.3612 32 1 3.1879 -1.1157 -3.0470 33 1 4.2407 -0.4090 -1.7974 34 1 0.6858 1.6845 -2.9092 35 1 1.1572 0.2746 -3.8879 36 1 0.6292 0.0517 -2.2027 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000215168985.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:11:31 Heat of formation + Delta-G solvation = -48.704923 kcal Electronic energy + Delta-G solvation = -17239.352642 eV Core-core repulsion = 14687.494159 eV Total energy + Delta-G solvation = -2551.858483 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 234.136 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.80164 -37.71729 -37.29045 -35.14653 -31.30397 -30.24209 -28.51521 -28.23671 -27.39498 -26.35864 -23.34770 -22.14375 -20.40892 -18.56803 -18.04366 -17.12931 -16.40122 -16.15071 -15.96268 -15.03611 -14.91191 -14.69202 -14.39562 -14.23765 -13.59872 -13.19636 -13.07599 -12.97746 -12.77626 -12.71307 -12.39139 -12.25892 -12.21964 -12.11967 -11.64485 -11.60303 -11.34484 -11.17662 -11.01182 -10.26003 -9.24619 -8.97933 -8.63471 -6.29766 0.91339 1.05699 1.35175 1.48102 1.50702 2.17939 2.68221 3.27708 3.80449 3.98825 4.16764 4.31660 4.58311 4.60785 4.67908 4.73146 4.83034 4.88633 4.90297 4.92612 5.02131 5.06324 5.11602 5.19512 5.20622 5.30692 5.34823 5.46969 5.59467 5.64881 5.70969 5.93758 6.12269 6.22727 6.38916 6.55066 6.85919 6.91130 7.35553 8.28772 Molecular weight = 234.14amu Principal moments of inertia in cm(-1) A = 0.033456 B = 0.008839 C = 0.007625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.722604 B = 3167.120989 C = 3671.192143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.327 6.327 3 C -0.036 4.036 4 C 0.059 3.941 5 C -0.480 4.480 6 H 0.071 0.929 7 C 0.038 3.962 8 N -0.818 5.818 9 Si 0.975 3.025 10 H -0.264 1.264 11 H -0.266 1.266 12 H -0.260 1.260 13 C -0.188 4.188 14 C -0.115 4.115 15 C -0.232 4.232 16 C -0.059 4.059 17 C -0.023 4.023 18 C -0.132 4.132 19 C -0.131 4.131 20 C -0.137 4.137 21 H 0.025 0.975 22 H 0.037 0.963 23 H 0.103 0.897 24 H 0.288 0.712 25 H 0.097 0.903 26 H 0.108 0.892 27 H 0.125 0.875 28 H 0.052 0.948 29 H 0.072 0.928 30 H 0.053 0.947 31 H 0.058 0.942 32 H 0.069 0.931 33 H 0.038 0.962 34 H 0.036 0.964 35 H 0.074 0.926 36 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.350 -3.940 -6.759 7.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.244 6.244 3 C -0.080 4.080 4 C 0.056 3.944 5 C -0.509 4.509 6 H 0.090 0.910 7 C -0.178 4.178 8 N -0.444 5.444 9 Si 0.796 3.204 10 H -0.188 1.188 11 H -0.190 1.190 12 H -0.184 1.184 13 C -0.207 4.207 14 C -0.133 4.133 15 C -0.251 4.251 16 C -0.060 4.060 17 C -0.023 4.023 18 C -0.189 4.189 19 C -0.188 4.188 20 C -0.194 4.194 21 H 0.044 0.956 22 H 0.056 0.944 23 H 0.121 0.879 24 H 0.099 0.901 25 H 0.115 0.885 26 H 0.126 0.874 27 H 0.143 0.857 28 H 0.071 0.929 29 H 0.091 0.909 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.093 0.907 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.335 -3.889 -6.674 7.731 hybrid contribution -0.382 0.476 1.230 1.373 sum -0.047 -3.412 -5.444 6.425 Atomic orbital electron populations 1.22934 0.81683 1.02208 0.99604 1.85844 1.18864 1.25921 1.93767 1.18623 1.06554 0.90454 0.92414 1.18281 0.91123 0.92317 0.92685 1.19553 1.35691 0.94500 1.01178 0.91039 1.26718 0.92044 0.94341 1.04650 1.69907 1.32430 1.05242 1.36816 0.85295 0.78877 0.79642 0.76576 1.18848 1.19041 1.18368 1.20882 1.02970 0.98802 0.98060 1.20723 0.99742 0.99028 0.93815 1.20651 1.10069 0.95982 0.98389 1.19893 0.98474 0.94257 0.93356 1.19394 0.96439 0.94711 0.91726 1.21869 0.99245 1.00238 0.97529 1.21857 0.99817 0.95389 1.01731 1.21958 0.95145 1.00942 1.01367 0.95616 0.94425 0.87922 0.90114 0.88466 0.87377 0.85710 0.92899 0.90945 0.92777 0.92305 0.91204 0.94310 0.94446 0.90726 0.92277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.19 9.54 113.37 1.08 2.27 16 2 O -0.33 -14.90 6.43 -89.58 -0.58 -15.48 16 3 C -0.04 -1.79 5.45 23.07 0.13 -1.66 16 4 C 0.06 3.23 5.56 -21.20 -0.12 3.11 16 5 C -0.48 -26.28 7.40 23.40 0.17 -26.10 16 6 H 0.07 3.92 7.50 -2.91 -0.02 3.90 16 7 C 0.04 1.95 5.08 85.25 0.43 2.38 16 8 N -0.82 -43.04 11.09 21.83 0.24 -42.80 16 9 Si 0.98 38.95 29.61 68.60 2.03 40.99 16 10 H -0.26 -10.28 7.11 99.48 0.71 -9.58 16 11 H -0.27 -10.00 7.11 99.48 0.71 -9.29 16 12 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 13 C -0.19 -10.09 8.65 22.47 0.19 -9.89 16 14 C -0.11 -5.43 9.97 22.00 0.22 -5.21 16 15 C -0.23 -10.10 9.00 22.42 0.20 -9.90 16 16 C -0.06 -2.60 4.74 -19.80 -0.09 -2.70 16 17 C -0.02 -0.78 0.75 -52.93 -0.04 -0.82 16 18 C -0.13 -3.73 7.12 71.98 0.51 -3.22 16 19 C -0.13 -4.29 8.19 71.98 0.59 -3.70 16 20 C -0.14 -4.33 7.83 71.98 0.56 -3.77 16 21 H 0.03 1.12 6.87 -2.39 -0.02 1.10 16 22 H 0.04 1.42 6.52 -2.39 -0.02 1.41 16 23 H 0.10 3.22 8.14 -2.39 -0.02 3.20 16 24 H 0.29 13.69 8.30 -92.71 -0.77 12.92 16 25 H 0.10 5.45 6.21 -2.91 -0.02 5.44 16 26 H 0.11 4.50 8.06 -2.91 -0.02 4.48 16 27 H 0.13 4.64 5.87 -2.91 -0.02 4.63 16 28 H 0.05 1.50 7.73 -2.39 -0.02 1.49 16 29 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.05 1.52 7.29 -2.38 -0.02 1.51 16 31 H 0.06 2.16 5.80 -2.38 -0.01 2.14 16 32 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.04 1.24 8.10 -2.39 -0.02 1.22 16 35 H 0.07 1.88 8.11 -2.39 -0.02 1.86 16 36 H 0.06 1.95 4.51 -2.39 -0.01 1.94 16 Total: -1.00 -59.54 281.16 6.60 -52.93 By element: Atomic # 1 Polarization: 22.50 SS G_CDS: 1.06 Total: 23.56 kcal Atomic # 6 Polarization: -63.04 SS G_CDS: 3.84 Total: -59.20 kcal Atomic # 7 Polarization: -43.04 SS G_CDS: 0.24 Total: -42.80 kcal Atomic # 8 Polarization: -14.90 SS G_CDS: -0.58 Total: -15.48 kcal Atomic # 14 Polarization: 38.95 SS G_CDS: 2.03 Total: 40.99 kcal Total: -59.54 6.60 -52.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215168985.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.229 kcal (2) G-P(sol) polarization free energy of solvation -59.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds