Wall clock time and date at job start Mon Mar 30 2020 05:07:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42899 * 114.00391 * 2 1 4 4 C 1.52999 * 109.47144 * 59.99716 * 3 2 1 5 5 C 1.53003 * 109.46829 * 299.99899 * 3 2 1 6 6 C 1.52991 * 109.47330 * 180.02562 * 3 2 1 7 7 C 1.50701 * 109.47447 * 64.99787 * 6 3 2 8 8 C 1.38642 * 119.74797 * 269.72765 * 7 6 3 9 9 C 1.37620 * 120.24431 * 179.71713 * 8 7 6 10 10 C 1.40718 * 119.74652 * 0.57430 * 9 8 7 11 11 C 1.41396 * 120.23993 * 179.68010 * 10 9 8 12 12 H 1.08004 * 119.99239 * 204.39578 * 11 10 9 13 13 C 1.39940 * 120.00236 * 24.40455 * 11 10 9 14 14 N 1.30817 * 120.00276 * 17.85366 * 13 11 10 15 15 Si 1.86802 * 119.99819 * 197.85728 * 13 11 10 16 16 H 1.48502 * 109.47125 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47458 * 119.99550 * 15 13 11 18 18 H 1.48504 * 109.46760 * 239.99865 * 15 13 11 19 19 C 1.40710 * 119.50910 * 359.69919 * 10 9 8 20 20 C 1.37618 * 119.74999 * 0.02562 * 19 10 9 21 21 H 1.09002 * 109.47285 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.47013 * 299.99843 * 1 2 3 23 23 H 1.08996 * 109.47144 * 60.00083 * 1 2 3 24 24 H 1.09001 * 109.47333 * 300.00179 * 4 3 2 25 25 H 1.08998 * 109.46924 * 60.00314 * 4 3 2 26 26 H 1.09000 * 109.47063 * 180.02562 * 4 3 2 27 27 H 1.08992 * 109.47188 * 179.97438 * 5 3 2 28 28 H 1.09001 * 109.46957 * 300.00194 * 5 3 2 29 29 H 1.09003 * 109.46710 * 59.99851 * 5 3 2 30 30 H 1.09000 * 109.47372 * 184.99596 * 6 3 2 31 31 H 1.09003 * 109.47428 * 304.99524 * 6 3 2 32 32 H 1.07996 * 119.87536 * 359.97438 * 8 7 6 33 33 H 1.08000 * 120.12425 * 180.27540 * 9 8 7 34 34 H 0.97000 * 120.00303 * 180.02562 * 14 13 11 35 35 H 1.08002 * 120.12261 * 179.97438 * 19 10 9 36 36 H 1.07999 * 119.88037 * 180.02562 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.5588 2.0647 1.2492 5 6 1.5588 2.0647 -1.2493 6 6 3.5354 1.1846 -0.0006 7 6 3.9883 0.5465 -1.2886 8 6 4.1145 -0.8320 -1.3662 9 6 4.5217 -1.4259 -2.5390 10 6 4.8219 -0.6276 -3.6583 11 6 5.2477 -1.2263 -4.8664 12 1 5.8385 -0.6596 -5.5709 13 6 4.9034 -2.5528 -5.1493 14 7 3.9238 -3.1272 -4.4997 15 14 5.8427 -3.5036 -6.4544 16 1 6.8954 -2.6342 -7.0386 17 1 6.4728 -4.6990 -5.8387 18 1 4.9062 -3.9331 -7.5239 19 6 4.6957 0.7708 -3.5661 20 6 4.2814 1.3427 -2.3850 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 0.4722 2.1509 1.2492 25 1 1.8804 1.5238 2.1392 26 1 2.0019 3.0606 1.2489 27 1 2.0018 3.0605 -1.2491 28 1 1.8804 1.5236 -2.1392 29 1 0.4722 2.1507 -1.2492 30 1 3.9785 2.1764 0.0888 31 1 3.8515 0.5682 0.8410 32 1 3.8885 -1.4423 -0.5044 33 1 4.6151 -2.5002 -2.5987 34 1 3.6854 -4.0468 -4.6956 35 1 4.9240 1.3930 -4.4189 36 1 4.1834 2.4158 -2.3120 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259274578.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:07:59 Heat of formation + Delta-G solvation = -42.875873 kcal Electronic energy + Delta-G solvation = -16625.073908 eV Core-core repulsion = 14073.468192 eV Total energy + Delta-G solvation = -2551.605717 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 234.136 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.91801 -37.16553 -34.07678 -32.73307 -30.14304 -29.14548 -27.39928 -27.01499 -26.13643 -23.68498 -20.83966 -20.19826 -19.19726 -17.18878 -16.02792 -15.16079 -15.13020 -14.89580 -14.19848 -13.72886 -13.45350 -13.09339 -12.85678 -12.36559 -12.17420 -11.82211 -11.68438 -11.51793 -11.40494 -11.32226 -11.09929 -10.95276 -10.71971 -10.41659 -10.21453 -10.07402 -9.44687 -9.26999 -9.07202 -9.00778 -7.30589 -7.15052 -6.66475 -4.24517 2.83912 3.11678 3.17201 3.18843 3.27107 3.99615 4.21861 4.68190 5.18570 5.23819 5.43302 5.56359 5.66378 5.73961 5.82771 5.87049 5.94301 6.06251 6.10940 6.18986 6.31156 6.41856 6.49914 6.55108 6.62093 6.80514 7.07624 7.16711 7.41860 7.48346 7.71885 7.74686 7.98737 8.16364 8.28036 8.41286 8.75942 9.00026 9.09339 10.27871 Molecular weight = 234.14amu Principal moments of inertia in cm(-1) A = 0.040984 B = 0.006331 C = 0.005922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.026484 B = 4421.708602 C = 4727.100735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.364 6.364 3 C 0.116 3.884 4 C -0.177 4.177 5 C -0.175 4.175 6 C -0.042 4.042 7 C -0.201 4.201 8 C -0.080 4.080 9 C -0.167 4.167 10 C 0.108 3.892 11 C -0.466 4.466 12 H 0.075 0.925 13 C 0.076 3.924 14 N -0.794 5.794 15 Si 0.904 3.096 16 H -0.261 1.261 17 H -0.273 1.273 18 H -0.276 1.276 19 C -0.229 4.229 20 C -0.089 4.089 21 H 0.078 0.922 22 H 0.034 0.966 23 H 0.040 0.960 24 H 0.053 0.947 25 H 0.059 0.941 26 H 0.062 0.938 27 H 0.057 0.943 28 H 0.082 0.918 29 H 0.046 0.954 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.087 0.913 33 H 0.115 0.885 34 H 0.278 0.722 35 H 0.088 0.912 36 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.406 5.466 6.832 9.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.283 6.283 3 C 0.077 3.923 4 C -0.235 4.235 5 C -0.232 4.232 6 C -0.079 4.079 7 C -0.203 4.203 8 C -0.099 4.099 9 C -0.186 4.186 10 C 0.106 3.894 11 C -0.495 4.495 12 H 0.093 0.907 13 C -0.141 4.141 14 N -0.419 5.419 15 Si 0.729 3.271 16 H -0.185 1.185 17 H -0.198 1.198 18 H -0.201 1.201 19 C -0.248 4.248 20 C -0.107 4.107 21 H 0.097 0.903 22 H 0.053 0.947 23 H 0.058 0.942 24 H 0.072 0.928 25 H 0.078 0.922 26 H 0.081 0.919 27 H 0.076 0.924 28 H 0.100 0.900 29 H 0.064 0.936 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.105 0.895 33 H 0.133 0.867 34 H 0.089 0.911 35 H 0.106 0.894 36 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -4.429 5.082 6.833 9.598 hybrid contribution -0.036 -0.265 -0.656 0.708 sum -4.466 4.817 6.177 9.017 Atomic orbital electron populations 1.22698 0.82966 1.02015 0.99330 1.88083 1.18131 1.27279 1.94791 1.21544 0.94787 0.82976 0.93037 1.22449 1.01187 1.00825 0.98996 1.22449 0.99990 1.00610 1.00198 1.20252 0.90794 0.99757 0.97101 1.18875 1.13051 0.93579 0.94747 1.20511 0.99072 0.93384 0.96912 1.21301 1.05641 0.99794 0.91869 1.17608 0.88328 0.90851 0.92592 1.19588 1.30070 0.96336 1.03556 0.90661 1.25881 0.93556 0.97884 0.96795 1.69851 1.21466 1.13495 1.37128 0.86333 0.80468 0.79749 0.80551 1.18493 1.19780 1.20123 1.20920 1.11831 0.95189 0.96906 1.20344 1.00331 0.96484 0.93570 0.90317 0.94739 0.94159 0.92762 0.92162 0.91888 0.92365 0.89961 0.93550 0.91684 0.92185 0.89513 0.86687 0.91103 0.89369 0.89857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.21 101.05 1.03 1.42 16 2 O -0.36 -6.66 9.84 -35.23 -0.35 -7.00 16 3 C 0.12 1.89 0.82 -90.62 -0.07 1.82 16 4 C -0.18 -2.28 8.25 37.16 0.31 -1.98 16 5 C -0.18 -2.83 7.48 37.16 0.28 -2.55 16 6 C -0.04 -0.74 4.67 -27.89 -0.13 -0.87 16 7 C -0.20 -4.43 4.27 -104.33 -0.44 -4.88 16 8 C -0.08 -1.95 9.37 -39.66 -0.37 -2.33 16 9 C -0.17 -4.48 8.70 -38.87 -0.34 -4.82 16 10 C 0.11 2.97 5.57 -106.83 -0.60 2.38 16 11 C -0.47 -12.71 9.05 -37.74 -0.34 -13.06 16 12 H 0.08 1.98 7.91 -52.48 -0.42 1.57 16 13 C 0.08 1.96 5.14 -17.35 -0.09 1.88 16 14 N -0.79 -21.18 10.95 55.55 0.61 -20.57 16 15 Si 0.90 19.13 29.60 -169.99 -5.03 14.10 16 16 H -0.26 -5.47 7.11 56.52 0.40 -5.07 16 17 H -0.27 -5.67 7.11 56.52 0.40 -5.26 16 18 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 19 C -0.23 -5.74 9.80 -38.87 -0.38 -6.12 16 20 C -0.09 -2.00 7.80 -39.66 -0.31 -2.31 16 21 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 22 H 0.03 0.42 6.42 -51.93 -0.33 0.09 16 23 H 0.04 0.57 6.42 -51.93 -0.33 0.23 16 24 H 0.05 0.64 6.54 -51.93 -0.34 0.30 16 25 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 26 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.08 1.61 6.13 -51.93 -0.32 1.29 16 29 H 0.05 0.66 6.54 -51.93 -0.34 0.32 16 30 H 0.06 1.04 8.08 -51.93 -0.42 0.62 16 31 H 0.06 1.05 8.08 -51.93 -0.42 0.63 16 32 H 0.09 2.00 8.06 -52.49 -0.42 1.58 16 33 H 0.12 3.21 6.16 -52.49 -0.32 2.89 16 34 H 0.28 6.74 8.30 -40.82 -0.34 6.40 16 35 H 0.09 2.10 8.06 -52.49 -0.42 1.67 16 36 H 0.08 1.64 8.03 -52.49 -0.42 1.22 16 LS Contribution 290.12 15.07 4.37 4.37 Total: -1.00 -28.50 290.12 -7.19 -35.69 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -5.33 Total: 4.84 kcal Atomic # 6 Polarization: -29.97 SS G_CDS: -1.46 Total: -31.43 kcal Atomic # 7 Polarization: -21.18 SS G_CDS: 0.61 Total: -20.57 kcal Atomic # 8 Polarization: -6.66 SS G_CDS: -0.35 Total: -7.00 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -5.03 Total: 14.10 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -28.50 -7.19 -35.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259274578.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.187 kcal (2) G-P(sol) polarization free energy of solvation -28.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds