Wall clock time and date at job start Mon Mar 30 2020 05:08:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42895 * 114.00075 * 2 1 4 4 C 1.53001 * 109.47093 * 299.99936 * 3 2 1 5 5 C 1.53001 * 109.47356 * 59.99583 * 3 2 1 6 6 C 1.53002 * 109.47542 * 180.02562 * 3 2 1 7 7 C 1.50701 * 109.47063 * 64.99779 * 6 3 2 8 8 C 1.38663 * 119.87250 * 269.73064 * 7 6 3 9 9 C 1.38619 * 120.49602 * 179.72297 * 8 7 6 10 10 C 1.37639 * 120.24703 * 0.54886 * 9 8 7 11 11 C 1.40700 * 119.74551 * 359.72964 * 10 9 8 12 12 C 1.41393 * 120.23991 * 180.02562 * 11 10 9 13 13 H 1.08004 * 119.99815 * 204.36481 * 12 11 10 14 14 C 1.39947 * 120.00447 * 24.37688 * 12 11 10 15 15 N 1.30827 * 119.99519 * 17.87180 * 14 12 11 16 16 Si 1.86797 * 119.99997 * 197.87905 * 14 12 11 17 17 H 1.48495 * 109.47231 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47322 * 119.99807 * 16 14 12 19 19 H 1.48497 * 109.46843 * 239.99578 * 16 14 12 20 20 C 1.37585 * 119.87549 * 90.00103 * 7 6 3 21 21 H 1.09001 * 109.47416 * 60.00222 * 1 2 3 22 22 H 1.09003 * 109.47465 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47484 * 299.99787 * 1 2 3 24 24 H 1.09000 * 109.47168 * 59.99796 * 4 3 2 25 25 H 1.09005 * 109.47287 * 179.97438 * 4 3 2 26 26 H 1.08999 * 109.47049 * 299.99992 * 4 3 2 27 27 H 1.09004 * 109.46694 * 60.00110 * 5 3 2 28 28 H 1.08995 * 109.47316 * 180.02562 * 5 3 2 29 29 H 1.09000 * 109.47103 * 300.00326 * 5 3 2 30 30 H 1.08991 * 109.47472 * 184.99949 * 6 3 2 31 31 H 1.09004 * 109.46623 * 304.99809 * 6 3 2 32 32 H 1.07998 * 119.75027 * 0.02562 * 8 7 6 33 33 H 1.07998 * 119.87304 * 180.25696 * 9 8 7 34 34 H 1.07995 * 120.12349 * 179.74539 * 10 9 8 35 35 H 0.96999 * 119.99275 * 180.02562 * 15 14 12 36 36 H 1.08006 * 120.12969 * 359.97438 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.5587 2.0647 -1.2493 5 6 1.5587 2.0648 1.2492 6 6 3.5354 1.1847 -0.0006 7 6 3.9883 0.5466 -1.2886 8 6 4.1154 -0.8318 -1.3692 9 6 4.5254 -1.4327 -2.5491 10 6 4.8220 -0.6643 -3.6519 11 6 4.7021 0.7357 -3.5799 12 6 5.0035 1.5351 -4.7066 13 1 5.2957 2.5664 -4.5743 14 6 4.9229 0.9902 -5.9930 15 7 4.2506 -0.1139 -6.1947 16 14 5.7752 1.8391 -7.4221 17 1 6.4625 3.0613 -6.9331 18 1 6.7722 0.9167 -8.0225 19 1 4.7681 2.2145 -8.4467 20 6 4.2794 1.3344 -2.3784 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 0.4721 2.1507 -1.2493 25 1 2.0017 3.0606 -1.2491 26 1 1.8804 1.5237 -2.1392 27 1 1.8803 1.5238 2.1392 28 1 2.0017 3.0606 1.2489 29 1 0.4721 2.1508 1.2491 30 1 3.9785 2.1764 0.0889 31 1 3.8514 0.5683 0.8410 32 1 3.8886 -1.4422 -0.5075 33 1 4.6171 -2.5075 -2.6019 34 1 5.1452 -1.1343 -4.5689 35 1 4.1951 -0.4918 -7.0864 36 1 4.1834 2.4082 -2.3123 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259424167.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:08:06 Heat of formation + Delta-G solvation = -58.121960 kcal Electronic energy + Delta-G solvation = -16686.894891 eV Core-core repulsion = 14134.628055 eV Total energy + Delta-G solvation = -2552.266836 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 234.136 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.38217 -38.90953 -35.78896 -34.41375 -31.74491 -31.45366 -28.48695 -27.95445 -27.11380 -26.45366 -22.51528 -22.06019 -20.70502 -18.80141 -17.28886 -17.11248 -16.40449 -16.32192 -16.06758 -15.36707 -15.28817 -14.48582 -14.35995 -14.16545 -13.46576 -13.29153 -13.16309 -13.02361 -12.80641 -12.73179 -12.62964 -12.47362 -12.24742 -12.11123 -12.07573 -11.46905 -11.26193 -11.09647 -10.97788 -10.34579 -9.29755 -9.00695 -8.59440 -6.29476 1.03901 1.16802 1.37651 1.52235 1.54295 2.22045 2.76757 2.99620 3.72537 3.95125 4.03755 4.21981 4.45507 4.50864 4.52265 4.60448 4.69212 4.74081 4.77480 4.83874 4.92109 4.94295 5.04090 5.11822 5.17554 5.20510 5.25560 5.36974 5.50232 5.60136 5.79052 6.11273 6.17242 6.29932 6.44903 6.50447 6.76766 6.99751 7.12087 8.38058 Molecular weight = 234.14amu Principal moments of inertia in cm(-1) A = 0.035291 B = 0.006640 C = 0.006352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.212470 B = 4215.738098 C = 4407.014071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.397 6.397 3 C 0.118 3.882 4 C -0.174 4.174 5 C -0.168 4.168 6 C -0.060 4.060 7 C -0.050 4.050 8 C -0.218 4.218 9 C -0.117 4.117 10 C -0.195 4.195 11 C 0.076 3.924 12 C -0.503 4.503 13 H 0.073 0.927 14 C 0.034 3.966 15 N -0.831 5.831 16 Si 0.980 3.020 17 H -0.257 1.257 18 H -0.266 1.266 19 H -0.266 1.266 20 C -0.223 4.223 21 H 0.037 0.963 22 H 0.087 0.913 23 H 0.061 0.939 24 H 0.064 0.936 25 H 0.070 0.930 26 H 0.039 0.961 27 H 0.068 0.932 28 H 0.079 0.921 29 H 0.070 0.930 30 H 0.090 0.910 31 H 0.076 0.924 32 H 0.104 0.896 33 H 0.102 0.898 34 H 0.096 0.904 35 H 0.285 0.715 36 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.206 3.621 9.275 11.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.317 6.317 3 C 0.079 3.921 4 C -0.232 4.232 5 C -0.225 4.225 6 C -0.097 4.097 7 C -0.050 4.050 8 C -0.237 4.237 9 C -0.135 4.135 10 C -0.215 4.215 11 C 0.074 3.926 12 C -0.533 4.533 13 H 0.092 0.908 14 C -0.180 4.180 15 N -0.458 5.458 16 Si 0.801 3.199 17 H -0.181 1.181 18 H -0.190 1.190 19 H -0.191 1.191 20 C -0.242 4.242 21 H 0.055 0.945 22 H 0.106 0.894 23 H 0.080 0.920 24 H 0.083 0.917 25 H 0.089 0.911 26 H 0.058 0.942 27 H 0.087 0.913 28 H 0.098 0.902 29 H 0.089 0.911 30 H 0.108 0.892 31 H 0.095 0.905 32 H 0.122 0.878 33 H 0.120 0.880 34 H 0.114 0.886 35 H 0.096 0.904 36 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -5.183 3.304 9.100 10.981 hybrid contribution 0.085 0.146 -1.114 1.127 sum -5.098 3.450 7.986 10.083 Atomic orbital electron populations 1.22886 0.81061 1.03057 1.00522 1.88008 1.20339 1.28221 1.95100 1.21458 0.92711 0.83111 0.94817 1.22430 1.01310 1.00907 0.98508 1.22350 1.02370 1.01084 0.96736 1.20604 0.93168 1.01143 0.94752 1.19483 0.97347 0.93320 0.94882 1.20500 1.11396 0.94355 0.97437 1.20934 1.00407 0.98209 0.93961 1.21244 1.07836 0.94663 0.97713 1.17950 0.88945 0.92696 0.93037 1.19801 1.43350 0.98718 0.91430 0.90834 1.26748 0.93121 0.95251 1.02890 1.69918 1.31115 1.19979 1.24780 0.85198 0.78741 0.79209 0.76767 1.18078 1.19030 1.19116 1.20946 1.10761 0.97739 0.94779 0.94490 0.89425 0.92030 0.91680 0.91099 0.94179 0.91287 0.90239 0.91127 0.89175 0.90526 0.87776 0.88021 0.88629 0.90439 0.88609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.53 10.21 113.37 1.16 1.69 16 2 O -0.40 -13.38 9.85 -148.98 -1.47 -14.85 16 3 C 0.12 3.60 0.82 -10.79 -0.01 3.59 16 4 C -0.17 -5.71 7.48 71.98 0.54 -5.17 16 5 C -0.17 -3.68 8.25 71.98 0.59 -3.08 16 6 C -0.06 -2.02 4.67 29.85 0.14 -1.88 16 7 C -0.05 -2.23 4.24 -19.92 -0.08 -2.31 16 8 C -0.22 -10.10 9.41 22.46 0.21 -9.89 16 9 C -0.12 -5.85 10.02 22.22 0.22 -5.63 16 10 C -0.19 -10.91 8.70 22.73 0.20 -10.72 16 11 C 0.08 4.26 5.58 -21.29 -0.12 4.14 16 12 C -0.50 -28.14 9.05 23.46 0.21 -27.93 16 13 H 0.07 3.96 7.91 -2.91 -0.02 3.94 16 14 C 0.03 1.77 5.14 85.26 0.44 2.21 16 15 N -0.83 -45.57 10.95 21.83 0.24 -45.33 16 16 Si 0.98 39.61 29.60 68.60 2.03 41.64 16 17 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 18 H -0.27 -10.33 7.11 99.48 0.71 -9.63 16 19 H -0.27 -10.27 7.11 99.48 0.71 -9.56 16 20 C -0.22 -11.06 7.57 22.73 0.17 -10.88 16 21 H 0.04 0.96 6.42 -2.39 -0.02 0.95 16 22 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 23 H 0.06 1.24 6.42 -2.39 -0.02 1.23 16 24 H 0.06 1.84 6.54 -2.39 -0.02 1.82 16 25 H 0.07 2.12 8.14 -2.38 -0.02 2.10 16 26 H 0.04 1.68 6.14 -2.39 -0.01 1.66 16 27 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 28 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.07 1.34 6.54 -2.39 -0.02 1.33 16 30 H 0.09 2.72 8.08 -2.39 -0.02 2.70 16 31 H 0.08 2.43 8.08 -2.38 -0.02 2.41 16 32 H 0.10 4.41 8.06 -2.91 -0.02 4.39 16 33 H 0.10 4.58 8.06 -2.91 -0.02 4.56 16 34 H 0.10 5.61 6.15 -2.91 -0.02 5.59 16 35 H 0.29 14.11 8.30 -92.71 -0.77 13.34 16 36 H 0.10 4.48 8.03 -2.91 -0.02 4.46 16 Total: -1.00 -63.14 290.15 5.52 -57.62 By element: Atomic # 1 Polarization: 25.74 SS G_CDS: 1.05 Total: 26.78 kcal Atomic # 6 Polarization: -69.53 SS G_CDS: 3.67 Total: -65.86 kcal Atomic # 7 Polarization: -45.57 SS G_CDS: 0.24 Total: -45.33 kcal Atomic # 8 Polarization: -13.38 SS G_CDS: -1.47 Total: -14.85 kcal Atomic # 14 Polarization: 39.61 SS G_CDS: 2.03 Total: 41.64 kcal Total: -63.14 5.52 -57.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259424167.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.507 kcal (2) G-P(sol) polarization free energy of solvation -63.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds