Wall clock time and date at job start Mon Mar 30 2020 05:59:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42908 * 113.99997 * 2 1 4 4 H 1.09004 * 109.46649 * 29.99783 * 3 2 1 5 5 C 1.53002 * 109.46925 * 270.00072 * 3 2 1 6 6 C 1.52994 * 109.47199 * 150.00263 * 3 2 1 7 7 C 1.52999 * 109.46879 * 294.99875 * 6 3 2 8 8 C 1.50706 * 109.47209 * 179.97438 * 7 6 3 9 9 C 1.38639 * 119.74839 * 90.00005 * 8 7 6 10 10 C 1.37620 * 120.24897 * 180.23652 * 9 8 7 11 11 C 1.40715 * 119.74131 * 359.51904 * 10 9 8 12 12 C 1.41399 * 120.24183 * 180.22985 * 11 10 9 13 13 H 1.07996 * 120.00044 * 204.52621 * 12 11 10 14 14 C 1.39950 * 119.99773 * 24.53568 * 12 11 10 15 15 N 1.30821 * 119.99991 * 17.71280 * 14 12 11 16 16 Si 1.86800 * 119.99756 * 197.70913 * 14 12 11 17 17 H 1.48506 * 109.46742 * 59.99979 * 16 14 12 18 18 H 1.48505 * 109.46999 * 179.97438 * 16 14 12 19 19 H 1.48491 * 109.47336 * 300.00007 * 16 14 12 20 20 C 1.40715 * 119.51261 * 0.47567 * 11 10 9 21 21 C 1.37609 * 119.74608 * 359.75586 * 20 11 10 22 22 H 1.09002 * 109.47061 * 299.99909 * 1 2 3 23 23 H 1.08994 * 109.47166 * 60.00005 * 1 2 3 24 24 H 1.08998 * 109.46850 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.46871 * 60.00143 * 5 3 2 26 26 H 1.09005 * 109.46873 * 179.97438 * 5 3 2 27 27 H 1.08996 * 109.47486 * 299.99946 * 5 3 2 28 28 H 1.08997 * 109.47240 * 175.00460 * 6 3 2 29 29 H 1.08996 * 109.47326 * 54.99999 * 6 3 2 30 30 H 1.08994 * 109.47411 * 60.00441 * 7 6 3 31 31 H 1.09001 * 109.47802 * 299.99725 * 7 6 3 32 32 H 1.08000 * 119.87572 * 359.95847 * 9 8 7 33 33 H 1.07993 * 120.12561 * 179.72165 * 10 9 8 34 34 H 0.97005 * 119.99803 * 180.02562 * 15 14 12 35 35 H 1.08000 * 120.12510 * 179.73128 * 20 11 10 36 36 H 1.08002 * 119.87647 * 179.97438 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3449 1.9994 0.5138 5 6 2.2177 1.7714 -1.4425 6 6 3.3589 1.2633 0.7212 7 6 3.1383 0.9185 2.1954 8 6 4.4668 0.8763 2.9057 9 6 4.9720 2.0282 3.4887 10 6 6.1864 2.0025 4.1357 11 6 6.9109 0.7987 4.2129 12 6 8.1574 0.7591 4.8793 13 1 8.8837 0.0026 4.6215 14 6 8.4497 1.7002 5.8730 15 7 7.4839 2.3839 6.4308 16 14 10.2190 1.9799 6.4029 17 1 11.0199 2.4296 5.2360 18 1 10.2600 3.0206 7.4615 19 1 10.7836 0.7125 6.9319 20 6 6.3883 -0.3643 3.6175 21 6 5.1743 -0.3141 2.9715 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.2567 1.8015 -1.9563 26 1 2.6606 2.7674 -1.4425 27 1 2.8829 1.0776 -1.9564 28 1 3.8426 2.2370 0.6443 29 1 3.9931 0.5053 0.2617 30 1 2.6546 -0.0552 2.2723 31 1 2.5042 1.6766 2.6550 32 1 4.4126 2.9502 3.4311 33 1 6.5802 2.9020 4.5853 34 1 7.6866 3.0365 7.1193 35 1 6.9381 -1.2926 3.6669 36 1 4.7714 -1.2054 2.5134 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259556240.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:57 Heat of formation + Delta-G solvation = -54.491517 kcal Electronic energy + Delta-G solvation = -15828.689377 eV Core-core repulsion = 13276.579968 eV Total energy + Delta-G solvation = -2552.109409 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 234.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.46864 -37.47532 -34.35957 -33.04638 -30.85890 -29.22900 -28.34344 -26.67230 -25.21414 -22.68668 -20.95018 -20.81323 -19.61020 -17.23334 -16.71039 -15.39997 -15.18614 -14.98355 -14.23376 -13.91182 -13.67342 -13.24366 -12.70910 -12.63601 -12.39135 -12.19258 -11.88044 -11.72595 -11.51384 -11.22916 -11.08590 -10.82110 -10.73025 -10.46949 -10.22628 -10.15099 -9.62118 -9.38899 -9.28377 -9.04559 -7.38916 -7.20324 -6.70622 -4.28578 2.82563 3.08537 3.11539 3.13142 3.25721 3.88031 3.96729 4.64023 4.95918 5.12483 5.26278 5.32122 5.37358 5.60318 5.66689 5.72479 5.78121 5.82165 6.04761 6.24474 6.29137 6.33770 6.41074 6.56186 6.60174 6.80627 7.01578 7.13385 7.31751 7.37513 7.44815 7.68095 7.95437 8.11209 8.21160 8.36718 8.70100 8.95543 9.04433 10.24074 Molecular weight = 234.14amu Principal moments of inertia in cm(-1) A = 0.058886 B = 0.004464 C = 0.004410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 475.384255 B = 6270.362242 C = 6347.700633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.381 6.381 3 C 0.083 3.917 4 H 0.057 0.943 5 C -0.174 4.174 6 C -0.109 4.109 7 C -0.051 4.051 8 C -0.209 4.209 9 C -0.099 4.099 10 C -0.165 4.165 11 C 0.108 3.892 12 C -0.466 4.466 13 H 0.076 0.924 14 C 0.077 3.923 15 N -0.796 5.796 16 Si 0.907 3.093 17 H -0.264 1.264 18 H -0.279 1.279 19 H -0.266 1.266 20 C -0.226 4.226 21 C -0.087 4.087 22 H 0.039 0.961 23 H 0.035 0.965 24 H 0.081 0.919 25 H 0.050 0.950 26 H 0.065 0.935 27 H 0.063 0.937 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.057 0.943 31 H 0.047 0.953 32 H 0.085 0.915 33 H 0.116 0.884 34 H 0.280 0.720 35 H 0.090 0.910 36 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.705 0.614 -8.760 12.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.300 6.300 3 C 0.025 3.975 4 H 0.075 0.925 5 C -0.231 4.231 6 C -0.146 4.146 7 C -0.089 4.089 8 C -0.211 4.211 9 C -0.118 4.118 10 C -0.184 4.184 11 C 0.106 3.894 12 C -0.496 4.496 13 H 0.094 0.906 14 C -0.141 4.141 15 N -0.422 5.422 16 Si 0.731 3.269 17 H -0.189 1.189 18 H -0.204 1.204 19 H -0.191 1.191 20 C -0.245 4.245 21 C -0.106 4.106 22 H 0.058 0.942 23 H 0.054 0.946 24 H 0.100 0.900 25 H 0.069 0.931 26 H 0.084 0.916 27 H 0.082 0.918 28 H 0.091 0.909 29 H 0.087 0.913 30 H 0.076 0.924 31 H 0.066 0.934 32 H 0.103 0.897 33 H 0.134 0.866 34 H 0.091 0.909 35 H 0.108 0.892 36 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -8.635 0.626 -8.562 12.177 hybrid contribution 0.538 0.412 0.348 0.762 sum -8.097 1.038 -8.214 11.580 Atomic orbital electron populations 1.22730 0.81980 1.02315 0.99524 1.87959 1.18859 1.28218 1.95001 1.22298 0.95899 0.84183 0.95116 0.92527 1.22290 1.01752 1.01752 0.97330 1.21751 0.94303 1.02410 0.96161 1.20169 0.95304 1.00513 0.92898 1.19084 0.98134 0.94674 1.09166 1.20543 0.96500 0.95740 0.99012 1.21303 0.95768 0.98517 1.02809 1.17606 0.92183 0.90465 0.89168 1.19550 1.00724 1.12550 1.16776 0.90610 1.25888 0.98867 0.94276 0.95038 1.69827 1.33383 1.19356 1.19602 0.86397 0.82847 0.78866 0.78749 1.18878 1.20395 1.19060 1.20974 0.97508 0.97298 1.08750 1.20395 0.95286 0.95678 0.99213 0.94192 0.94613 0.90023 0.93068 0.91638 0.91809 0.90924 0.91304 0.92381 0.93430 0.89717 0.86580 0.90945 0.89185 0.89534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.82 101.05 1.09 1.42 16 2 O -0.38 -5.42 9.88 -35.23 -0.35 -5.76 16 3 C 0.08 1.09 2.72 -26.73 -0.07 1.02 16 4 H 0.06 0.70 7.79 -51.93 -0.40 0.29 16 5 C -0.17 -1.95 9.53 37.16 0.35 -1.60 16 6 C -0.11 -1.72 4.90 -26.73 -0.13 -1.85 16 7 C -0.05 -0.93 5.23 -27.88 -0.15 -1.08 16 8 C -0.21 -4.67 5.16 -104.32 -0.54 -5.21 16 9 C -0.10 -2.36 9.67 -39.66 -0.38 -2.75 16 10 C -0.16 -4.37 8.70 -38.87 -0.34 -4.71 16 11 C 0.11 2.96 5.57 -106.82 -0.60 2.36 16 12 C -0.47 -12.69 9.06 -37.74 -0.34 -13.03 16 13 H 0.08 1.98 7.91 -52.49 -0.41 1.57 16 14 C 0.08 1.96 5.14 -17.34 -0.09 1.87 16 15 N -0.80 -20.98 10.95 55.55 0.61 -20.38 16 16 Si 0.91 18.97 29.59 -169.99 -5.03 13.94 16 17 H -0.26 -5.48 7.11 56.52 0.40 -5.08 16 18 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 19 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 20 C -0.23 -5.74 9.80 -38.88 -0.38 -6.12 16 21 C -0.09 -2.04 9.67 -39.66 -0.38 -2.42 16 22 H 0.04 0.39 8.09 -51.93 -0.42 -0.03 16 23 H 0.04 0.32 7.87 -51.93 -0.41 -0.09 16 24 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.05 0.51 7.87 -51.92 -0.41 0.10 16 26 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 29 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.06 1.06 7.76 -51.93 -0.40 0.65 16 31 H 0.05 0.82 8.08 -51.93 -0.42 0.40 16 32 H 0.08 1.81 8.06 -52.49 -0.42 1.39 16 33 H 0.12 3.17 6.16 -52.49 -0.32 2.85 16 34 H 0.28 6.72 8.30 -40.82 -0.34 6.38 16 35 H 0.09 2.16 8.06 -52.49 -0.42 1.74 16 36 H 0.09 1.82 8.06 -52.49 -0.42 1.39 16 LS Contribution 302.41 15.07 4.56 4.56 Total: -1.00 -28.29 302.41 -7.88 -36.18 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -5.72 Total: 3.54 kcal Atomic # 6 Polarization: -30.12 SS G_CDS: -1.95 Total: -32.08 kcal Atomic # 7 Polarization: -20.98 SS G_CDS: 0.61 Total: -20.38 kcal Atomic # 8 Polarization: -5.42 SS G_CDS: -0.35 Total: -5.76 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -5.03 Total: 13.94 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -28.29 -7.88 -36.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259556240.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.312 kcal (2) G-P(sol) polarization free energy of solvation -28.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds