Wall clock time and date at job start Mon Mar 30 2020 05:37:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42904 * 114.00176 * 2 1 4 4 C 1.52992 * 109.47212 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47385 * 59.99670 * 4 3 2 6 6 C 1.53005 * 109.47117 * 299.99528 * 4 3 2 7 7 C 1.50702 * 109.47128 * 179.97438 * 4 3 2 8 8 C 1.37645 * 120.12919 * 352.93082 * 7 4 3 9 9 C 1.38609 * 120.24750 * 180.32298 * 8 7 4 10 10 C 1.38661 * 120.50282 * 359.66586 * 9 8 7 11 11 C 1.37592 * 120.24428 * 0.02562 * 10 9 8 12 12 C 1.40698 * 120.13044 * 172.62237 * 7 4 3 13 13 C 1.41398 * 120.24048 * 359.97438 * 12 7 4 14 14 H 1.07996 * 120.00283 * 47.32001 * 13 12 7 15 15 C 1.39947 * 119.99851 * 227.31424 * 13 12 7 16 16 N 1.30827 * 119.99747 * 18.04407 * 15 13 12 17 17 Si 1.86803 * 120.00153 * 198.03221 * 15 13 12 18 18 H 1.48494 * 109.47088 * 180.02562 * 17 15 13 19 19 H 1.48499 * 109.47131 * 300.01060 * 17 15 13 20 20 H 1.48507 * 109.46561 * 60.00509 * 17 15 13 21 21 H 1.08994 * 109.46862 * 179.97438 * 1 2 3 22 22 H 1.08995 * 109.47336 * 300.00260 * 1 2 3 23 23 H 1.09003 * 109.46741 * 60.00736 * 1 2 3 24 24 H 1.09005 * 109.46886 * 59.98996 * 3 2 1 25 25 H 1.09001 * 109.46501 * 299.99692 * 3 2 1 26 26 H 1.08997 * 109.47181 * 190.70655 * 5 4 3 27 27 H 1.08998 * 109.47483 * 310.70942 * 5 4 3 28 28 H 1.09005 * 109.47203 * 70.70928 * 5 4 3 29 29 H 1.08998 * 109.47284 * 291.82936 * 6 4 3 30 30 H 1.08998 * 109.47035 * 51.83012 * 6 4 3 31 31 H 1.08999 * 109.46820 * 171.82445 * 6 4 3 32 32 H 1.08004 * 119.87141 * 0.02562 * 8 7 4 33 33 H 1.07999 * 119.74660 * 179.69425 * 9 8 7 34 34 H 1.07992 * 119.87348 * 180.02562 * 10 9 8 35 35 H 1.08001 * 120.12201 * 180.02562 * 11 10 9 36 36 H 0.96991 * 119.99877 * 359.32097 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 6 3.9875 0.4251 -1.2482 6 6 3.9864 0.4257 1.2503 7 6 4.1484 2.5614 0.0000 8 6 3.3502 3.6730 -0.1475 9 6 3.9122 4.9400 -0.1551 10 6 5.2812 5.1037 -0.0077 11 6 6.0975 4.0071 0.1475 12 6 5.5381 2.7158 0.1567 13 6 6.3672 1.5815 0.3161 14 1 6.2566 0.7346 -0.3449 15 6 7.3311 1.5564 1.3303 16 7 7.2459 2.3906 2.3345 17 14 8.7393 0.3315 1.2505 18 1 9.6162 0.5075 2.4358 19 1 8.1939 -1.0497 1.2393 20 1 9.5267 0.5627 0.0128 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5137 -0.8901 24 1 1.6885 1.8464 0.8899 25 1 1.6887 1.8463 -0.8900 26 1 5.0439 0.1726 -1.1574 27 1 3.4027 -0.4892 -1.3489 28 1 3.8378 1.0509 -2.1281 29 1 3.7943 1.0341 2.1340 30 1 3.4331 -0.5103 1.3263 31 1 5.0531 0.2125 1.1807 32 1 2.2826 3.5572 -0.2625 33 1 3.2788 5.8064 -0.2764 34 1 5.7082 6.0956 -0.0148 35 1 7.1635 4.1368 0.2625 36 1 6.5202 3.0330 2.3710 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259573996.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:37:21 Heat of formation + Delta-G solvation = -41.502899 kcal Electronic energy + Delta-G solvation = -17107.451802 eV Core-core repulsion = 14555.905623 eV Total energy + Delta-G solvation = -2551.546180 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 234.136 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.00632 -37.26734 -34.44839 -33.69434 -29.53679 -28.73937 -27.02741 -26.27178 -25.58534 -24.42849 -21.42134 -20.78962 -18.38288 -17.77499 -16.05251 -15.44405 -15.13081 -14.71120 -14.06682 -14.00382 -13.52542 -13.08548 -12.73080 -12.63229 -12.35579 -11.98296 -11.70912 -11.31670 -11.10932 -10.94954 -10.86292 -10.70488 -10.41458 -10.33127 -10.11357 -9.66526 -9.55024 -9.29031 -9.04397 -8.77396 -7.60207 -7.30867 -6.93961 -4.32299 2.71636 2.76157 3.24314 3.29055 3.42567 4.13806 4.15074 4.73400 5.32067 5.37501 5.45084 5.62790 5.68465 5.72940 5.77257 5.96000 6.03403 6.22257 6.23128 6.36567 6.47793 6.64033 6.70386 6.83674 6.91051 7.01651 7.07887 7.15575 7.43404 7.49765 7.52044 7.66608 7.80863 7.91826 7.98665 8.28140 8.32675 8.79235 9.03899 10.34906 Molecular weight = 234.14amu Principal moments of inertia in cm(-1) A = 0.022013 B = 0.010269 C = 0.007666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.652436 B = 2726.094018 C = 3651.758682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.386 6.386 3 C 0.072 3.928 4 C 0.011 3.989 5 C -0.136 4.136 6 C -0.138 4.138 7 C -0.156 4.156 8 C -0.103 4.103 9 C -0.226 4.226 10 C -0.103 4.103 11 C -0.188 4.188 12 C 0.112 3.888 13 C -0.544 4.544 14 H 0.085 0.915 15 C 0.036 3.964 16 N -0.825 5.825 17 Si 1.062 2.938 18 H -0.277 1.277 19 H -0.278 1.278 20 H -0.278 1.278 21 H 0.080 0.920 22 H 0.036 0.964 23 H 0.035 0.965 24 H 0.044 0.956 25 H 0.043 0.957 26 H 0.072 0.928 27 H 0.049 0.951 28 H 0.039 0.961 29 H 0.037 0.963 30 H 0.039 0.961 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.099 0.901 36 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.868 -2.670 -3.195 8.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.305 6.305 3 C -0.004 4.004 4 C 0.011 3.989 5 C -0.193 4.193 6 C -0.195 4.195 7 C -0.158 4.158 8 C -0.121 4.121 9 C -0.245 4.245 10 C -0.121 4.121 11 C -0.207 4.207 12 C 0.110 3.890 13 C -0.574 4.574 14 H 0.102 0.898 15 C -0.181 4.181 16 N -0.450 5.450 17 Si 0.887 3.113 18 H -0.202 1.202 19 H -0.203 1.203 20 H -0.204 1.204 21 H 0.098 0.902 22 H 0.054 0.946 23 H 0.053 0.947 24 H 0.062 0.938 25 H 0.061 0.939 26 H 0.090 0.910 27 H 0.068 0.932 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.112 0.888 32 H 0.110 0.890 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.117 0.883 36 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -5.394 -3.344 -2.330 6.760 hybrid contribution -1.773 1.122 -0.793 2.243 sum -7.166 -2.222 -3.123 8.127 Atomic orbital electron populations 1.22659 0.82361 1.01992 0.99468 1.87879 1.18421 1.28941 1.95257 1.22777 0.95210 0.83314 0.99125 1.18942 0.89553 0.93674 0.96712 1.21905 1.02397 0.98885 0.96132 1.21899 1.04417 0.97845 0.95306 1.19805 0.93760 0.92069 1.10142 1.20615 0.97461 0.92928 1.01125 1.20431 0.94745 0.95706 1.13659 1.20683 0.93836 0.97124 1.00468 1.21290 0.98112 0.92953 1.08347 1.17445 0.90329 0.92794 0.88421 1.20377 1.16673 1.02865 1.17502 0.89752 1.26685 0.99487 1.00062 0.91913 1.70465 1.32411 1.15635 1.26534 0.83660 0.75413 0.75225 0.76999 1.20224 1.20326 1.20385 0.90191 0.94574 0.94656 0.93768 0.93885 0.90954 0.93220 0.94141 0.94419 0.94233 0.88766 0.88983 0.89193 0.89150 0.88294 0.89661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 101.05 1.11 1.52 16 2 O -0.39 -6.64 9.05 -35.23 -0.32 -6.96 16 3 C 0.07 1.30 3.49 37.15 0.13 1.43 16 4 C 0.01 0.23 0.58 -155.66 -0.09 0.14 16 5 C -0.14 -2.69 8.23 37.16 0.31 -2.38 16 6 C -0.14 -2.97 7.88 37.16 0.29 -2.67 16 7 C -0.16 -3.60 4.75 -103.91 -0.49 -4.10 16 8 C -0.10 -2.23 9.00 -39.66 -0.36 -2.59 16 9 C -0.23 -4.87 10.05 -39.29 -0.39 -5.27 16 10 C -0.10 -2.31 10.02 -39.66 -0.40 -2.71 16 11 C -0.19 -4.65 8.18 -38.88 -0.32 -4.96 16 12 C 0.11 2.82 4.65 -106.83 -0.50 2.32 16 13 C -0.54 -13.63 5.23 -37.74 -0.20 -13.83 16 14 H 0.08 2.07 4.79 -52.49 -0.25 1.82 16 15 C 0.04 0.91 5.03 -17.34 -0.09 0.82 16 16 N -0.83 -22.16 13.28 55.55 0.74 -21.42 16 17 Si 1.06 21.98 29.97 -169.99 -5.09 16.88 16 18 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 19 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 20 H -0.28 -5.56 7.11 56.52 0.40 -5.15 16 21 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 22 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 23 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 24 H 0.04 0.80 7.84 -51.93 -0.41 0.39 16 25 H 0.04 0.75 7.19 -51.93 -0.37 0.37 16 26 H 0.07 1.50 5.10 -51.93 -0.26 1.23 16 27 H 0.05 0.91 7.39 -51.93 -0.38 0.53 16 28 H 0.04 0.78 8.10 -51.93 -0.42 0.36 16 29 H 0.04 0.84 8.13 -51.93 -0.42 0.41 16 30 H 0.04 0.79 7.45 -51.93 -0.39 0.40 16 31 H 0.09 2.19 4.96 -51.93 -0.26 1.93 16 32 H 0.09 1.76 5.91 -52.48 -0.31 1.45 16 33 H 0.09 1.70 8.06 -52.49 -0.42 1.28 16 34 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 35 H 0.10 2.51 7.90 -52.49 -0.41 2.10 16 36 H 0.29 8.07 6.80 -40.82 -0.28 7.80 16 LS Contribution 283.82 15.07 4.28 4.28 Total: -1.00 -26.77 283.82 -6.47 -33.24 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -5.08 Total: 6.25 kcal Atomic # 6 Polarization: -31.27 SS G_CDS: -0.99 Total: -32.26 kcal Atomic # 7 Polarization: -22.16 SS G_CDS: 0.74 Total: -21.42 kcal Atomic # 8 Polarization: -6.64 SS G_CDS: -0.32 Total: -6.96 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.09 Total: 16.88 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -26.77 -6.47 -33.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259573996.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.268 kcal (2) G-P(sol) polarization free energy of solvation -26.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds