Wall clock time and date at job start Mon Mar 30 2020 05:37:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42904 * 114.00176 * 2 1 4 4 C 1.52992 * 109.47212 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47385 * 59.99670 * 4 3 2 6 6 C 1.53005 * 109.47117 * 299.99528 * 4 3 2 7 7 C 1.50702 * 109.47128 * 179.97438 * 4 3 2 8 8 C 1.37645 * 120.12919 * 352.93082 * 7 4 3 9 9 C 1.38609 * 120.24750 * 180.32298 * 8 7 4 10 10 C 1.38661 * 120.50282 * 359.66586 * 9 8 7 11 11 C 1.37592 * 120.24428 * 0.02562 * 10 9 8 12 12 C 1.40698 * 120.13044 * 172.62237 * 7 4 3 13 13 C 1.41398 * 120.24048 * 359.97438 * 12 7 4 14 14 H 1.07996 * 120.00283 * 47.32001 * 13 12 7 15 15 C 1.39947 * 119.99851 * 227.31424 * 13 12 7 16 16 N 1.30827 * 119.99747 * 18.04407 * 15 13 12 17 17 Si 1.86803 * 120.00153 * 198.03221 * 15 13 12 18 18 H 1.48494 * 109.47088 * 180.02562 * 17 15 13 19 19 H 1.48499 * 109.47131 * 300.01060 * 17 15 13 20 20 H 1.48507 * 109.46561 * 60.00509 * 17 15 13 21 21 H 1.08994 * 109.46862 * 179.97438 * 1 2 3 22 22 H 1.08995 * 109.47336 * 300.00260 * 1 2 3 23 23 H 1.09003 * 109.46741 * 60.00736 * 1 2 3 24 24 H 1.09005 * 109.46886 * 59.98996 * 3 2 1 25 25 H 1.09001 * 109.46501 * 299.99692 * 3 2 1 26 26 H 1.08997 * 109.47181 * 190.70655 * 5 4 3 27 27 H 1.08998 * 109.47483 * 310.70942 * 5 4 3 28 28 H 1.09005 * 109.47203 * 70.70928 * 5 4 3 29 29 H 1.08998 * 109.47284 * 291.82936 * 6 4 3 30 30 H 1.08998 * 109.47035 * 51.83012 * 6 4 3 31 31 H 1.08999 * 109.46820 * 171.82445 * 6 4 3 32 32 H 1.08004 * 119.87141 * 0.02562 * 8 7 4 33 33 H 1.07999 * 119.74660 * 179.69425 * 9 8 7 34 34 H 1.07992 * 119.87348 * 180.02562 * 10 9 8 35 35 H 1.08001 * 120.12201 * 180.02562 * 11 10 9 36 36 H 0.96991 * 119.99877 * 359.32097 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 6 3.9875 0.4251 -1.2482 6 6 3.9864 0.4257 1.2503 7 6 4.1484 2.5614 0.0000 8 6 3.3502 3.6730 -0.1475 9 6 3.9122 4.9400 -0.1551 10 6 5.2812 5.1037 -0.0077 11 6 6.0975 4.0071 0.1475 12 6 5.5381 2.7158 0.1567 13 6 6.3672 1.5815 0.3161 14 1 6.2566 0.7346 -0.3449 15 6 7.3311 1.5564 1.3303 16 7 7.2459 2.3906 2.3345 17 14 8.7393 0.3315 1.2505 18 1 9.6162 0.5075 2.4358 19 1 8.1939 -1.0497 1.2393 20 1 9.5267 0.5627 0.0128 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5137 -0.8901 24 1 1.6885 1.8464 0.8899 25 1 1.6887 1.8463 -0.8900 26 1 5.0439 0.1726 -1.1574 27 1 3.4027 -0.4892 -1.3489 28 1 3.8378 1.0509 -2.1281 29 1 3.7943 1.0341 2.1340 30 1 3.4331 -0.5103 1.3263 31 1 5.0531 0.2125 1.1807 32 1 2.2826 3.5572 -0.2625 33 1 3.2788 5.8064 -0.2764 34 1 5.7082 6.0956 -0.0148 35 1 7.1635 4.1368 0.2625 36 1 6.5202 3.0330 2.3710 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259573996.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:37:20 Heat of formation + Delta-G solvation = -54.993172 kcal Electronic energy + Delta-G solvation = -17108.036785 eV Core-core repulsion = 14555.905623 eV Total energy + Delta-G solvation = -2552.131162 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 234.136 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.66506 -38.70175 -36.05175 -35.53214 -31.35414 -30.47282 -28.33289 -27.94449 -27.15201 -25.97943 -23.17072 -22.58608 -20.04330 -19.58348 -17.46830 -16.69996 -16.67836 -16.37543 -15.79910 -15.64484 -15.04147 -14.66426 -14.40063 -14.31078 -14.05859 -13.65155 -13.15430 -12.86899 -12.71891 -12.59916 -12.38471 -12.26966 -12.12726 -11.96478 -11.76032 -11.38936 -11.19792 -10.81942 -10.63377 -10.55139 -9.40030 -9.17326 -8.85263 -6.26394 0.90842 0.95392 1.54558 1.64469 1.79437 2.43550 2.88232 2.90333 3.49120 4.00280 4.13164 4.15563 4.38274 4.42999 4.51324 4.52725 4.55310 4.64578 4.78229 4.82012 4.84926 4.95254 5.01966 5.12374 5.19396 5.27901 5.34109 5.50090 5.64191 5.73886 5.84907 5.98643 6.01055 6.12563 6.28747 6.43337 6.47708 6.91817 7.16530 8.38083 Molecular weight = 234.14amu Principal moments of inertia in cm(-1) A = 0.022013 B = 0.010269 C = 0.007666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.652436 B = 2726.094018 C = 3651.758682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.405 6.405 3 C 0.082 3.918 4 C 0.007 3.993 5 C -0.128 4.128 6 C -0.127 4.127 7 C -0.162 4.162 8 C -0.110 4.110 9 C -0.218 4.218 10 C -0.111 4.111 11 C -0.210 4.210 12 C 0.084 3.916 13 C -0.555 4.555 14 H 0.085 0.915 15 C -0.001 4.001 16 N -0.857 5.857 17 Si 1.105 2.895 18 H -0.282 1.282 19 H -0.260 1.260 20 H -0.267 1.267 21 H 0.100 0.900 22 H 0.044 0.956 23 H 0.049 0.951 24 H 0.043 0.957 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.063 0.937 28 H 0.042 0.958 29 H 0.018 0.982 30 H 0.052 0.948 31 H 0.072 0.928 32 H 0.123 0.877 33 H 0.124 0.876 34 H 0.114 0.886 35 H 0.078 0.922 36 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.755 -2.934 -4.185 10.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.325 6.325 3 C 0.006 3.994 4 C 0.007 3.993 5 C -0.185 4.185 6 C -0.184 4.184 7 C -0.164 4.164 8 C -0.128 4.128 9 C -0.237 4.237 10 C -0.129 4.129 11 C -0.229 4.229 12 C 0.082 3.918 13 C -0.586 4.586 14 H 0.102 0.898 15 C -0.212 4.212 16 N -0.484 5.484 17 Si 0.925 3.075 18 H -0.207 1.207 19 H -0.185 1.185 20 H -0.192 1.192 21 H 0.118 0.882 22 H 0.063 0.937 23 H 0.068 0.932 24 H 0.061 0.939 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.082 0.918 28 H 0.061 0.939 29 H 0.037 0.963 30 H 0.071 0.929 31 H 0.091 0.909 32 H 0.141 0.859 33 H 0.142 0.858 34 H 0.132 0.868 35 H 0.096 0.904 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -7.305 -3.609 -3.339 8.805 hybrid contribution -1.353 1.282 -0.545 1.942 sum -8.658 -2.326 -3.884 9.770 Atomic orbital electron populations 1.22926 0.79881 1.03793 1.00568 1.87834 1.21068 1.28149 1.95432 1.22535 0.93127 0.84160 0.99626 1.18970 0.91702 0.92287 0.96378 1.21795 1.01552 0.99396 0.95728 1.21758 1.03198 0.98253 0.95198 1.20140 0.93242 0.93979 1.08992 1.21014 0.99014 0.92537 1.00198 1.20891 0.94590 0.96999 1.11182 1.20978 0.94468 0.97533 0.99896 1.21307 0.97587 0.94104 1.09944 1.17750 0.91685 0.92987 0.89352 1.20475 1.17385 1.03069 1.17656 0.89767 1.27870 1.01244 1.00773 0.91299 1.70593 1.32570 1.17181 1.28046 0.83129 0.73063 0.74248 0.77100 1.20706 1.18477 1.19159 0.88168 0.93747 0.93219 0.93856 0.92642 0.92553 0.91786 0.93917 0.96286 0.92875 0.90909 0.85910 0.85761 0.86834 0.90385 0.91658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.54 11.01 113.37 1.25 1.78 16 2 O -0.41 -12.78 9.05 -148.98 -1.35 -14.13 16 3 C 0.08 2.75 3.49 71.98 0.25 3.01 16 4 C 0.01 0.27 0.58 -52.93 -0.03 0.24 16 5 C -0.13 -4.89 8.23 71.98 0.59 -4.30 16 6 C -0.13 -5.47 7.88 71.98 0.57 -4.90 16 7 C -0.16 -7.35 4.75 -19.40 -0.09 -7.44 16 8 C -0.11 -4.49 9.00 22.22 0.20 -4.29 16 9 C -0.22 -8.79 10.05 22.46 0.23 -8.56 16 10 C -0.11 -4.86 10.02 22.22 0.22 -4.64 16 11 C -0.21 -10.62 8.18 22.73 0.19 -10.43 16 12 C 0.08 4.30 4.65 -21.29 -0.10 4.20 16 13 C -0.56 -28.55 5.23 23.46 0.12 -28.43 16 14 H 0.08 4.23 4.79 -2.91 -0.01 4.21 16 15 C 0.00 -0.05 5.03 85.26 0.43 0.38 16 16 N -0.86 -47.92 13.28 21.83 0.29 -47.63 16 17 Si 1.10 45.05 29.97 68.60 2.06 47.11 16 18 H -0.28 -11.60 7.11 99.48 0.71 -10.90 16 19 H -0.26 -9.78 7.11 99.48 0.71 -9.08 16 20 H -0.27 -10.27 7.11 99.48 0.71 -9.56 16 21 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 22 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 23 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 24 H 0.04 1.45 7.84 -2.38 -0.02 1.44 16 25 H 0.06 1.72 7.19 -2.39 -0.02 1.71 16 26 H 0.06 2.32 5.10 -2.39 -0.01 2.31 16 27 H 0.06 2.23 7.39 -2.39 -0.02 2.21 16 28 H 0.04 1.57 8.10 -2.38 -0.02 1.56 16 29 H 0.02 0.83 8.13 -2.39 -0.02 0.81 16 30 H 0.05 2.08 7.45 -2.39 -0.02 2.06 16 31 H 0.07 3.45 4.96 -2.39 -0.01 3.44 16 32 H 0.12 4.23 5.91 -2.91 -0.02 4.21 16 33 H 0.12 4.16 8.06 -2.91 -0.02 4.13 16 34 H 0.11 4.36 8.06 -2.91 -0.02 4.33 16 35 H 0.08 4.16 7.90 -2.91 -0.02 4.14 16 36 H 0.27 15.90 6.80 -92.72 -0.63 15.27 16 Total: -1.00 -58.16 283.82 6.02 -52.15 By element: Atomic # 1 Polarization: 24.69 SS G_CDS: 1.20 Total: 25.89 kcal Atomic # 6 Polarization: -67.21 SS G_CDS: 3.82 Total: -63.38 kcal Atomic # 7 Polarization: -47.92 SS G_CDS: 0.29 Total: -47.63 kcal Atomic # 8 Polarization: -12.78 SS G_CDS: -1.35 Total: -14.13 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.06 Total: 47.11 kcal Total: -58.16 6.02 -52.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259573996.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.846 kcal (2) G-P(sol) polarization free energy of solvation -58.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds