Wall clock time and date at job start Mon Mar 30 2020 05:05:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47364 * 2 1 4 4 C 1.50701 * 109.47315 * 119.99684 * 2 1 3 5 5 C 1.34772 * 126.67821 * 300.00414 * 4 2 1 6 6 O 1.34523 * 108.48264 * 179.73487 * 5 4 2 7 7 C 1.33831 * 109.41621 * 0.37316 * 6 5 4 8 8 C 1.34886 * 108.29892 * 359.66240 * 7 6 5 9 9 C 1.50643 * 124.55343 * 180.14176 * 8 7 6 10 10 C 1.53396 * 108.39034 * 343.61624 * 9 8 7 11 11 C 1.53121 * 109.41755 * 49.56407 * 10 9 8 12 12 H 1.09003 * 109.46235 * 50.03273 * 11 10 9 13 13 C 1.50704 * 109.46228 * 169.99203 * 11 10 9 14 14 H 1.07998 * 119.99532 * 0.06865 * 13 11 10 15 15 C 1.37870 * 120.00205 * 180.02562 * 13 11 10 16 16 N 1.31523 * 120.00198 * 0.02562 * 15 13 11 17 17 Si 1.86801 * 120.00229 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47016 * 0.02562 * 17 15 13 19 19 H 1.48508 * 109.47228 * 120.00095 * 17 15 13 20 20 H 1.48500 * 109.47214 * 240.00358 * 17 15 13 21 21 C 1.50936 * 127.80067 * 179.97438 * 7 6 5 22 22 H 1.09001 * 109.46967 * 300.00164 * 1 2 3 23 23 H 1.08995 * 109.47058 * 60.00552 * 1 2 3 24 24 H 1.09004 * 109.46941 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47221 * 239.99373 * 2 1 3 26 26 H 1.08993 * 109.47169 * 180.02562 * 3 2 1 27 27 H 1.09003 * 109.46735 * 300.00023 * 3 2 1 28 28 H 1.08991 * 109.47291 * 59.99853 * 3 2 1 29 29 H 1.07997 * 125.75661 * 0.02562 * 5 4 2 30 30 H 1.09003 * 109.68025 * 223.88977 * 9 8 7 31 31 H 1.09007 * 109.68026 * 103.34525 * 9 8 7 32 32 H 1.08995 * 109.48116 * 289.57769 * 10 9 8 33 33 H 1.09005 * 109.47804 * 169.54473 * 10 9 8 34 34 H 0.96998 * 119.99740 * 179.97438 * 16 15 13 35 35 H 1.09000 * 109.67181 * 282.66518 * 21 7 6 36 36 H 1.09000 * 109.66885 * 43.16086 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7103 1.2305 5 6 1.7912 -0.3692 2.5118 6 8 2.4104 -1.2550 3.3128 7 6 3.0543 -2.1579 2.5636 8 6 2.8441 -1.8584 1.2653 9 6 3.4011 -2.6431 0.1064 10 6 4.5351 -3.5356 0.6266 11 6 4.0535 -4.3027 1.8612 12 1 3.0988 -4.7810 1.6421 13 6 5.0693 -5.3544 2.2267 14 1 5.9684 -5.4640 1.6386 15 6 4.8510 -6.1758 3.3122 16 7 3.7562 -6.0421 4.0286 17 14 6.1104 -7.4788 3.7657 18 1 7.2453 -7.4243 2.8095 19 1 6.6102 -7.2268 5.1413 20 1 5.4772 -8.8208 3.7071 21 6 3.8797 -3.3308 3.0340 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5139 -0.8900 26 1 3.1300 1.4425 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6768 1.9563 0.8899 29 1 1.1968 0.4706 2.8401 30 1 3.7893 -1.9585 -0.6478 31 1 2.6165 -3.2625 -0.3285 32 1 5.3912 -2.9164 0.8945 33 1 4.8265 -4.2428 -0.1500 34 1 3.6025 -6.6203 4.7921 35 1 4.8565 -2.9814 3.3684 36 1 3.3687 -3.8332 3.8553 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259638758.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:05:20 Heat of formation + Delta-G solvation = -21.559928 kcal Electronic energy + Delta-G solvation = -16692.373257 eV Core-core repulsion = 14141.691869 eV Total energy + Delta-G solvation = -2550.681388 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 234.136 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.03914 -36.45303 -35.87680 -32.73465 -30.67636 -29.13060 -28.10759 -27.05317 -24.76197 -22.61731 -22.51753 -20.64555 -18.77053 -17.78264 -16.38974 -16.19493 -15.38048 -14.55550 -14.49383 -13.98811 -13.56678 -13.14359 -13.10848 -12.70627 -12.26571 -12.17359 -12.14115 -11.70455 -11.26966 -11.13693 -11.11169 -10.91770 -10.75118 -10.54869 -10.29671 -10.28530 -9.63230 -9.12987 -8.94574 -8.67815 -8.44820 -7.41080 -6.05207 -4.11902 2.45124 3.23665 3.27958 3.36453 3.40165 3.75436 4.40366 4.98549 5.03537 5.26219 5.33411 5.40992 5.63736 5.66157 5.69190 5.87313 5.89004 5.97735 6.03434 6.10483 6.17839 6.34908 6.35888 6.52397 6.64394 6.68935 6.77399 6.88439 6.99052 7.06965 7.18721 7.30276 7.64760 7.85492 7.98298 8.02471 8.35990 8.93008 9.54066 11.01488 Molecular weight = 234.14amu Principal moments of inertia in cm(-1) A = 0.048878 B = 0.006191 C = 0.005841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.722862 B = 4521.725845 C = 4792.695239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.025 4.025 3 C -0.141 4.141 4 C -0.159 4.159 5 C -0.078 4.078 6 O -0.177 6.177 7 C 0.020 3.980 8 C -0.199 4.199 9 C -0.044 4.044 10 C -0.111 4.111 11 C 0.056 3.944 12 H 0.032 0.968 13 C -0.514 4.514 14 H 0.060 0.940 15 C 0.062 3.938 16 N -0.890 5.890 17 Si 0.893 3.107 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.284 1.284 21 C -0.033 4.033 22 H 0.052 0.948 23 H 0.052 0.948 24 H 0.056 0.944 25 H 0.075 0.925 26 H 0.055 0.945 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.187 0.813 30 H 0.054 0.946 31 H 0.061 0.939 32 H 0.049 0.951 33 H 0.055 0.945 34 H 0.262 0.738 35 H 0.065 0.935 36 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.118 11.033 -5.864 13.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.043 4.043 3 C -0.198 4.198 4 C -0.161 4.161 5 C -0.145 4.145 6 O -0.073 6.073 7 C -0.031 4.031 8 C -0.200 4.200 9 C -0.081 4.081 10 C -0.149 4.149 11 C 0.038 3.962 12 H 0.050 0.950 13 C -0.552 4.552 14 H 0.078 0.922 15 C -0.140 4.140 16 N -0.529 5.529 17 Si 0.721 3.279 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.210 1.210 21 C -0.070 4.070 22 H 0.071 0.929 23 H 0.071 0.929 24 H 0.075 0.925 25 H 0.093 0.907 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.204 0.796 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.083 0.917 36 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -4.209 10.953 -5.400 12.916 hybrid contribution 0.464 -0.553 0.284 0.776 sum -3.745 10.400 -5.116 12.180 Atomic orbital electron populations 1.21832 0.94949 1.01915 1.01155 1.19455 0.94984 0.94883 0.95012 1.21830 1.01280 0.95520 1.01178 1.19953 1.03135 0.98387 0.94579 1.23484 1.04595 0.97528 0.88901 1.83934 1.52363 1.33314 1.37708 1.23684 0.97065 0.92768 0.89543 1.20006 1.05466 0.99113 0.95443 1.20030 0.97920 0.96356 0.93813 1.21728 0.96294 0.97401 0.99430 1.18683 0.97339 0.91591 0.88620 0.95013 1.21210 1.05674 1.15762 1.12602 0.92153 1.25026 0.95421 0.97302 0.96265 1.69896 1.25343 1.39072 1.18550 0.86518 0.81552 0.81511 0.78337 1.19706 1.20990 1.20994 1.20754 0.95428 0.87620 1.03199 0.92897 0.92866 0.92516 0.90672 0.92626 0.92872 0.92894 0.79636 0.92742 0.92070 0.93234 0.92592 0.92845 0.91701 0.87770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.08 37.16 0.34 -1.31 16 2 C -0.02 -0.33 3.29 -91.77 -0.30 -0.63 16 3 C -0.14 -1.60 9.08 37.16 0.34 -1.26 16 4 C -0.16 -2.72 4.88 -104.94 -0.51 -3.23 16 5 C -0.08 -1.33 11.50 29.50 0.34 -0.99 16 6 O -0.18 -3.66 10.65 6.35 0.07 -3.60 16 7 C 0.02 0.44 7.22 -35.38 -0.26 0.19 16 8 C -0.20 -4.00 5.95 -104.93 -0.62 -4.62 16 9 C -0.04 -0.83 5.89 -27.71 -0.16 -0.99 16 10 C -0.11 -2.33 5.16 -26.46 -0.14 -2.47 16 11 C 0.06 1.39 2.06 -91.55 -0.19 1.21 16 12 H 0.03 0.86 8.11 -51.93 -0.42 0.44 16 13 C -0.51 -13.81 8.53 -34.44 -0.29 -14.10 16 14 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 15 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 16 N -0.89 -25.10 11.46 55.43 0.64 -24.46 16 17 Si 0.89 20.89 29.54 -169.99 -5.02 15.87 16 18 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 19 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 C -0.03 -0.79 5.19 -27.61 -0.14 -0.93 16 22 H 0.05 0.58 8.03 -51.93 -0.42 0.16 16 23 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 24 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.07 1.02 7.76 -51.93 -0.40 0.62 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.05 0.56 8.03 -51.93 -0.42 0.15 16 29 H 0.19 2.40 8.06 -52.49 -0.42 1.98 16 30 H 0.05 0.91 8.13 -51.93 -0.42 0.48 16 31 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.05 1.03 8.12 -51.93 -0.42 0.61 16 33 H 0.06 1.13 8.11 -51.93 -0.42 0.71 16 34 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 35 H 0.06 1.57 8.12 -51.93 -0.42 1.14 16 36 H 0.10 2.78 6.44 -51.93 -0.33 2.44 16 LS Contribution 291.74 15.07 4.40 4.40 Total: -1.00 -28.27 291.74 -7.38 -35.65 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: -5.76 Total: -0.28 kcal Atomic # 6 Polarization: -25.88 SS G_CDS: -1.70 Total: -27.58 kcal Atomic # 7 Polarization: -25.10 SS G_CDS: 0.64 Total: -24.46 kcal Atomic # 8 Polarization: -3.66 SS G_CDS: 0.07 Total: -3.60 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -28.27 -7.38 -35.65 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259638758.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.087 kcal (2) G-P(sol) polarization free energy of solvation -28.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds