Wall clock time and date at job start Mon Mar 30 2020 06:07:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86799 * 119.99699 * 2 1 4 4 H 1.48505 * 109.47097 * 269.99480 * 3 2 1 5 5 H 1.48501 * 109.47458 * 30.00083 * 3 2 1 6 6 H 1.48509 * 109.47235 * 150.00022 * 3 2 1 7 7 C 1.37878 * 120.00205 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00252 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99871 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47391 * 179.97438 * 9 7 2 11 11 C 1.50696 * 109.47358 * 180.02562 * 10 9 7 12 12 N 1.35024 * 126.15565 * 265.02321 * 11 10 9 13 13 H 0.96998 * 126.02998 * 359.87899 * 12 11 10 14 14 N 1.40155 * 107.95006 * 179.85788 * 12 11 10 15 15 C 1.30654 * 108.17689 * 359.87567 * 14 12 11 16 16 C 1.35075 * 126.16250 * 84.99886 * 11 10 9 17 17 C 1.50873 * 126.61693 * 0.83571 * 16 11 10 18 18 C 1.53076 * 109.07809 * 206.96984 * 17 16 11 19 19 C 1.52484 * 109.86582 * 271.07814 * 18 17 16 20 20 C 1.52451 * 111.13870 * 62.35183 * 19 18 17 21 21 C 1.50891 * 126.57078 * 180.82936 * 15 14 12 22 22 H 0.97003 * 119.99657 * 359.97438 * 1 2 3 23 23 H 1.09011 * 109.47148 * 59.99809 * 9 7 2 24 24 H 1.08996 * 109.47304 * 300.00111 * 9 7 2 25 25 H 1.08998 * 109.46694 * 59.99773 * 10 9 7 26 26 H 1.09004 * 109.46894 * 300.00081 * 10 9 7 27 27 H 1.09000 * 109.53767 * 326.85051 * 17 16 11 28 28 H 1.09001 * 109.53489 * 87.00862 * 17 16 11 29 29 H 1.09000 * 109.40220 * 31.19699 * 18 17 16 30 30 H 1.08995 * 109.40485 * 151.03172 * 18 17 16 31 31 H 1.09001 * 109.14159 * 182.77931 * 19 18 17 32 32 H 1.08999 * 109.14407 * 301.92439 * 19 18 17 33 33 H 1.09004 * 109.40219 * 153.95803 * 20 19 18 34 34 H 1.08998 * 109.40410 * 273.70351 * 20 19 18 35 35 H 1.09001 * 109.52857 * 346.31410 * 21 15 14 36 36 H 1.08993 * 109.52893 * 106.52547 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0017 10 6 2.2454 -3.6621 0.0015 11 6 1.4919 -4.9671 0.0020 12 7 1.1760 -5.7041 1.0883 13 1 1.3956 -5.4879 2.0080 14 7 0.4744 -6.8366 0.6529 15 6 0.3720 -6.7773 -0.6483 16 6 1.0106 -5.6100 -1.0841 17 6 1.1397 -5.1695 -2.5213 18 6 -0.0344 -5.7341 -3.3250 19 6 0.3241 -7.1136 -3.8667 20 6 0.5869 -8.0982 -2.7328 21 6 -0.3208 -7.7762 -1.5421 22 1 -0.4850 0.8401 0.0004 23 1 0.6241 -2.5575 -0.8881 24 1 0.6249 -2.5563 0.8919 25 1 2.8727 -3.6039 0.8909 26 1 2.8714 -3.6047 -0.8891 27 1 1.1258 -4.0808 -2.5715 28 1 2.0776 -5.5415 -2.9337 29 1 -0.9094 -5.8144 -2.6800 30 1 -0.2580 -5.0664 -4.1570 31 1 -0.4997 -7.4831 -4.4773 32 1 1.2182 -7.0336 -4.4850 33 1 0.3839 -9.1117 -3.0790 34 1 1.6294 -8.0246 -2.4235 35 1 -0.5231 -8.6885 -0.9808 36 1 -1.2586 -7.3536 -1.9027 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259679510.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:02 Heat of formation + Delta-G solvation = 34.395993 kcal Electronic energy + Delta-G solvation = -16494.653674 eV Core-core repulsion = 13978.691468 eV Total energy + Delta-G solvation = -2515.962206 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 234.143 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.06949 -37.01683 -34.28482 -32.49986 -31.06450 -30.83371 -28.34216 -25.94092 -25.01669 -23.58072 -21.45027 -20.02326 -19.14910 -18.78192 -16.72468 -16.08505 -15.31895 -14.90364 -14.54930 -14.20465 -13.55784 -13.28457 -12.95847 -12.69959 -12.46932 -12.15791 -12.03484 -11.42463 -11.37081 -11.04763 -10.97596 -10.65749 -10.52113 -10.43111 -10.30906 -10.10461 -9.79693 -9.74590 -9.19623 -8.72113 -8.41009 -7.72353 -6.05529 -4.09620 2.41271 3.20142 3.28694 3.33071 3.35497 3.38245 4.41115 4.82044 4.98238 5.04287 5.23375 5.30237 5.40777 5.44953 5.61240 5.66784 5.79178 5.82768 5.94129 6.02785 6.15918 6.23203 6.31322 6.40986 6.43493 6.46613 6.59765 6.68896 6.77991 6.84036 7.18816 7.59328 7.68305 7.81658 7.92798 8.19247 8.31329 8.97049 9.55047 11.05332 Molecular weight = 234.14amu Principal moments of inertia in cm(-1) A = 0.035284 B = 0.005981 C = 0.005472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.368739 B = 4680.544264 C = 5115.292098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.059 3.941 3 Si 0.893 3.107 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.525 4.525 8 H 0.057 0.943 9 C 0.032 3.968 10 C -0.057 4.057 11 C 0.119 3.881 12 N -0.481 5.481 13 H 0.434 0.566 14 N -0.313 5.313 15 C 0.082 3.918 16 C -0.243 4.243 17 C -0.038 4.038 18 C -0.121 4.121 19 C -0.117 4.117 20 C -0.111 4.111 21 C -0.038 4.038 22 H 0.261 0.739 23 H 0.024 0.976 24 H 0.014 0.986 25 H 0.060 0.940 26 H 0.078 0.922 27 H 0.075 0.925 28 H 0.060 0.940 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.259 -13.182 -5.194 14.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.563 4.563 8 H 0.075 0.925 9 C -0.006 4.006 10 C -0.097 4.097 11 C -0.010 4.010 12 N -0.188 5.188 13 H 0.278 0.722 14 N -0.136 5.136 15 C -0.085 4.085 16 C -0.254 4.254 17 C -0.076 4.076 18 C -0.158 4.158 19 C -0.155 4.155 20 C -0.150 4.150 21 C -0.077 4.077 22 H 0.071 0.929 23 H 0.042 0.958 24 H 0.033 0.967 25 H 0.079 0.921 26 H 0.097 0.903 27 H 0.093 0.907 28 H 0.078 0.922 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 0.820 -13.748 -4.148 14.383 hybrid contribution 0.709 1.613 -0.005 1.762 sum 1.529 -12.134 -4.153 12.916 Atomic orbital electron populations 1.69976 1.06087 1.26740 1.50298 1.25015 0.94828 0.99289 0.95139 0.86582 0.79796 0.83361 0.78189 1.20545 1.21226 1.19856 1.21189 0.93042 0.90768 1.51320 0.92478 1.19048 0.93539 0.90129 0.97837 1.20583 0.98208 0.88717 1.02145 1.21404 0.97894 0.94792 0.86864 1.46148 1.46281 1.17805 1.08604 0.72220 1.77043 1.18029 1.06083 1.12439 1.22130 0.98800 0.96162 0.91431 1.19650 1.11545 0.98286 0.95911 1.19893 0.97405 1.00803 0.89494 1.21571 0.99142 0.95627 0.99465 1.21432 1.01145 0.95484 0.97392 1.21434 1.00186 0.98572 0.94769 1.20058 0.97910 0.95983 0.93765 0.92892 0.95762 0.96736 0.92088 0.90340 0.90668 0.92182 0.91322 0.92046 0.92494 0.92160 0.91831 0.91686 0.91067 0.89740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.47 13.29 55.43 0.74 -25.73 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 21.19 29.54 -169.99 -5.02 16.16 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.52 -14.35 9.11 -34.44 -0.31 -14.67 16 8 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.03 0.81 4.95 -27.88 -0.14 0.67 16 10 C -0.06 -1.14 5.35 -27.88 -0.15 -1.29 16 11 C 0.12 2.24 6.46 -82.31 -0.53 1.71 16 12 N -0.48 -8.53 7.36 33.44 0.25 -8.28 16 13 H 0.43 6.55 8.96 -182.56 -1.64 4.91 16 14 N -0.31 -5.72 12.69 33.72 0.43 -5.29 16 15 C 0.08 1.38 6.33 -82.34 -0.52 0.86 16 16 C -0.24 -4.33 5.59 -105.00 -0.59 -4.91 16 17 C -0.04 -0.59 5.50 -27.76 -0.15 -0.74 16 18 C -0.12 -1.60 5.51 -26.96 -0.15 -1.75 16 19 C -0.12 -1.26 5.61 -27.28 -0.15 -1.42 16 20 C -0.11 -1.24 5.63 -26.94 -0.15 -1.39 16 21 C -0.04 -0.49 5.56 -27.71 -0.15 -0.65 16 22 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 23 H 0.02 0.65 7.86 -51.92 -0.41 0.24 16 24 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 26 H 0.08 1.51 8.03 -51.93 -0.42 1.09 16 27 H 0.07 1.32 7.72 -51.93 -0.40 0.92 16 28 H 0.06 0.86 7.83 -51.93 -0.41 0.46 16 29 H 0.07 0.98 5.64 -51.93 -0.29 0.68 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.61 8.08 -51.93 -0.42 0.19 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.80 7.80 -51.93 -0.41 0.40 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.08 1.04 6.37 -51.93 -0.33 0.71 16 LS Contribution 288.47 15.07 4.35 4.35 Total: -1.00 -30.68 288.47 -9.16 -39.84 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -6.79 Total: 0.98 kcal Atomic # 6 Polarization: -18.92 SS G_CDS: -3.10 Total: -22.02 kcal Atomic # 7 Polarization: -40.72 SS G_CDS: 1.41 Total: -39.30 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -30.68 -9.16 -39.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259679510.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.233 kcal (2) G-P(sol) polarization free energy of solvation -30.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.837 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds