Wall clock time and date at job start Mon Mar 30 2020 05:32:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52991 * 109.47145 * 2 1 4 4 C 1.53009 * 109.46730 * 119.99967 * 2 1 3 5 5 H 1.09004 * 109.46617 * 200.25034 * 4 2 1 6 6 C 1.50698 * 109.47123 * 320.24986 * 4 2 1 7 7 H 1.07996 * 120.00014 * 53.64142 * 6 4 2 8 8 C 1.37873 * 119.99871 * 233.64938 * 6 4 2 9 9 N 1.31521 * 120.00416 * 110.32784 * 8 6 4 10 10 Si 1.86800 * 119.99995 * 290.32360 * 8 6 4 11 11 H 1.48502 * 109.46927 * 53.57968 * 10 8 6 12 12 H 1.48490 * 109.47517 * 173.58266 * 10 8 6 13 13 H 1.48503 * 109.47079 * 293.58481 * 10 8 6 14 14 C 1.52997 * 109.47383 * 80.25373 * 4 2 1 15 15 H 1.08994 * 109.46872 * 185.62183 * 14 4 2 16 16 O 1.42901 * 109.46678 * 305.61795 * 14 4 2 17 17 C 1.50698 * 109.47084 * 65.61551 * 14 4 2 18 18 C 1.38234 * 119.99994 * 93.81981 * 17 14 4 19 19 C 1.38231 * 120.00432 * 179.97438 * 18 17 14 20 20 C 1.38239 * 119.99453 * 359.95930 * 19 18 17 21 21 C 1.38229 * 120.00429 * 359.97438 * 20 19 18 22 22 C 1.38234 * 120.00009 * 0.07431 * 21 20 19 23 23 H 1.09001 * 109.47444 * 306.74185 * 1 2 3 24 24 H 1.09002 * 109.46990 * 66.74679 * 1 2 3 25 25 H 1.09005 * 109.47201 * 186.74312 * 1 2 3 26 26 H 1.09003 * 109.47022 * 239.99417 * 2 1 3 27 27 H 1.08996 * 109.47412 * 208.89295 * 3 2 1 28 28 H 1.08999 * 109.47163 * 328.88872 * 3 2 1 29 29 H 1.09000 * 109.47681 * 88.89248 * 3 2 1 30 30 H 0.97001 * 119.99898 * 179.97438 * 9 8 6 31 31 H 0.96703 * 114.00160 * 70.09981 * 16 14 4 32 32 H 1.08009 * 119.99756 * 359.97438 * 18 17 14 33 33 H 1.07995 * 120.00325 * 179.97438 * 19 18 17 34 34 H 1.07999 * 119.99491 * 179.71972 * 20 19 18 35 35 H 1.07999 * 120.00224 * 179.97438 * 21 20 19 36 36 H 1.08000 * 120.00538 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 1 3.0701 -0.4238 1.4455 6 6 1.1774 -0.3533 2.4290 7 1 0.1061 -0.4781 2.3745 8 6 1.7561 0.1428 3.5779 9 7 1.5783 1.4022 3.9129 10 14 2.7925 -0.9737 4.6589 11 1 3.8495 -1.6162 3.8372 12 1 3.4234 -0.1718 5.7378 13 1 1.9287 -2.0208 5.2610 14 6 1.9797 -2.2336 1.0255 15 1 2.2476 -2.7484 1.9481 16 8 0.6549 -2.6056 0.6399 17 6 2.9469 -2.6190 -0.0640 18 6 4.2270 -3.0273 0.2608 19 6 5.1141 -3.3813 -0.7385 20 6 4.7206 -3.3280 -2.0626 21 6 3.4401 -2.9211 -2.3874 22 6 2.5534 -2.5661 -1.3882 23 1 -0.3634 0.6148 0.8235 24 1 -0.3633 0.4057 -0.9442 25 1 -0.3634 -1.0206 0.1207 26 1 1.8933 -0.5139 -0.8900 27 1 3.0093 1.4851 -0.4965 28 1 1.3316 2.0782 -0.5310 29 1 2.1424 1.7917 1.0274 30 1 1.9851 1.7511 4.7214 31 1 0.4057 -2.3102 -0.2465 32 1 4.5341 -3.0696 1.2954 33 1 6.1143 -3.6999 -0.4847 34 1 5.4151 -3.6003 -2.8436 35 1 3.1329 -2.8790 -3.4219 36 1 1.5530 -2.2477 -1.6418 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259823495.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:27 Heat of formation + Delta-G solvation = -18.947073 kcal Electronic energy + Delta-G solvation = -17189.504232 eV Core-core repulsion = 14638.936146 eV Total energy + Delta-G solvation = -2550.568086 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 234.136 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.48579 -37.07231 -34.12323 -32.47440 -31.19009 -30.49986 -28.33280 -26.15476 -24.73067 -22.60354 -22.04931 -20.52377 -18.63819 -17.43234 -16.36717 -15.23520 -14.91226 -14.81191 -14.40147 -13.75126 -13.63388 -13.12063 -12.82080 -12.54383 -12.50914 -11.98703 -11.61867 -11.56179 -11.12441 -10.99731 -10.81183 -10.67391 -10.52062 -10.29611 -9.96313 -9.75724 -9.34418 -9.15988 -8.81169 -8.55419 -8.20651 -7.68246 -6.71196 -3.66436 1.70938 1.72197 3.31574 3.44948 3.56043 4.12835 4.46518 4.65325 5.17751 5.20032 5.28826 5.34016 5.47698 5.82729 5.89273 6.03515 6.09135 6.17960 6.26523 6.32881 6.53429 6.60216 6.70441 6.76053 6.78748 6.80483 6.85284 7.05935 7.15059 7.32434 7.33112 7.41887 7.52293 7.56678 7.73569 8.44957 8.68124 9.23461 9.54221 10.39580 Molecular weight = 234.14amu Principal moments of inertia in cm(-1) A = 0.023877 B = 0.010177 C = 0.008491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.400844 B = 2750.553321 C = 3296.962116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.089 4.089 3 C -0.136 4.136 4 C 0.038 3.962 5 H 0.034 0.966 6 C -0.620 4.620 7 H 0.081 0.919 8 C 0.174 3.826 9 N -0.760 5.760 10 Si 0.752 3.248 11 H -0.266 1.266 12 H -0.293 1.293 13 H -0.272 1.272 14 C 0.138 3.862 15 H 0.092 0.908 16 O -0.551 6.551 17 C -0.093 4.093 18 C -0.120 4.120 19 C -0.120 4.120 20 C -0.139 4.139 21 C -0.120 4.120 22 C -0.120 4.120 23 H 0.071 0.929 24 H 0.017 0.983 25 H 0.062 0.938 26 H 0.040 0.960 27 H 0.027 0.973 28 H 0.034 0.966 29 H 0.075 0.925 30 H 0.266 0.734 31 H 0.359 0.641 32 H 0.119 0.881 33 H 0.115 0.885 34 H 0.114 0.886 35 H 0.116 0.884 36 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.961 -4.984 -9.690 11.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.107 4.107 3 C -0.193 4.193 4 C 0.018 3.982 5 H 0.052 0.948 6 C -0.647 4.647 7 H 0.098 0.902 8 C -0.044 4.044 9 N -0.383 5.383 10 Si 0.572 3.428 11 H -0.191 1.191 12 H -0.220 1.220 13 H -0.198 1.198 14 C 0.079 3.921 15 H 0.109 0.891 16 O -0.359 6.359 17 C -0.094 4.094 18 C -0.138 4.138 19 C -0.138 4.138 20 C -0.157 4.157 21 C -0.138 4.138 22 C -0.137 4.137 23 H 0.090 0.910 24 H 0.036 0.964 25 H 0.080 0.920 26 H 0.059 0.941 27 H 0.046 0.954 28 H 0.053 0.947 29 H 0.094 0.906 30 H 0.077 0.923 31 H 0.209 0.791 32 H 0.137 0.863 33 H 0.133 0.867 34 H 0.132 0.868 35 H 0.134 0.866 36 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 3.928 -4.979 -9.012 11.020 hybrid contribution 0.873 -0.443 0.340 1.037 sum 4.801 -5.423 -8.673 11.299 Atomic orbital electron populations 1.22123 0.96185 1.02398 0.99336 1.21238 0.95741 0.95987 0.97782 1.21746 0.97904 0.96826 1.02806 1.19287 0.96875 0.88031 0.94019 0.94762 1.20003 0.94503 1.52142 0.98093 0.90174 1.24841 0.90244 0.92039 0.97303 1.71072 1.33886 1.12620 1.20746 0.88706 0.82940 0.88186 0.82979 1.19096 1.21989 1.19797 1.21761 0.78704 0.99545 0.92071 0.89064 1.86622 1.31609 1.80759 1.36920 1.21269 0.96434 0.95451 0.96221 1.21031 0.93653 0.99720 0.99400 1.21066 0.99155 1.00486 0.93088 1.20985 0.96407 1.02194 0.96133 1.21032 0.94073 0.99916 0.98787 1.20897 0.99727 1.00590 0.92534 0.90990 0.96394 0.91977 0.94141 0.95384 0.94673 0.90603 0.92334 0.79088 0.86322 0.86659 0.86808 0.86618 0.86297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.82 7.53 37.16 0.28 -2.54 16 2 C -0.09 -1.81 2.29 -90.62 -0.21 -2.01 16 3 C -0.14 -2.76 9.46 37.15 0.35 -2.41 16 4 C 0.04 0.87 1.45 -91.77 -0.13 0.74 16 5 H 0.03 0.83 7.76 -51.93 -0.40 0.43 16 6 C -0.62 -16.16 6.36 -34.44 -0.22 -16.38 16 7 H 0.08 2.27 6.68 -52.49 -0.35 1.92 16 8 C 0.17 4.61 5.10 -17.82 -0.09 4.52 16 9 N -0.76 -20.45 13.96 55.43 0.77 -19.68 16 10 Si 0.75 18.55 29.29 -169.99 -4.98 13.57 16 11 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 12 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 13 H -0.27 -6.89 7.11 56.52 0.40 -6.49 16 14 C 0.14 2.90 2.99 -27.89 -0.08 2.82 16 15 H 0.09 2.07 7.99 -51.93 -0.41 1.66 16 16 O -0.55 -11.35 11.48 -35.23 -0.40 -11.75 16 17 C -0.09 -1.71 4.77 -104.62 -0.50 -2.21 16 18 C -0.12 -2.07 9.69 -39.59 -0.38 -2.45 16 19 C -0.12 -1.77 10.05 -39.58 -0.40 -2.16 16 20 C -0.14 -1.90 10.05 -39.58 -0.40 -2.30 16 21 C -0.12 -1.70 10.05 -39.59 -0.40 -2.09 16 22 C -0.12 -1.93 7.40 -39.58 -0.29 -2.22 16 23 H 0.07 1.61 6.76 -51.93 -0.35 1.26 16 24 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 25 H 0.06 1.19 4.52 -51.93 -0.23 0.96 16 26 H 0.04 0.76 4.67 -51.93 -0.24 0.51 16 27 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.03 0.65 7.85 -51.93 -0.41 0.24 16 29 H 0.07 1.78 7.54 -51.93 -0.39 1.38 16 30 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 31 H 0.36 6.33 4.34 45.56 0.20 6.53 16 32 H 0.12 2.03 8.06 -52.48 -0.42 1.60 16 33 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 34 H 0.11 1.24 8.06 -52.49 -0.42 0.82 16 35 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 36 H 0.12 1.76 5.68 -52.49 -0.30 1.46 16 LS Contribution 283.83 15.07 4.28 4.28 Total: -1.00 -27.35 283.83 -7.37 -34.72 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -4.57 Total: 7.58 kcal Atomic # 6 Polarization: -26.25 SS G_CDS: -2.47 Total: -28.72 kcal Atomic # 7 Polarization: -20.45 SS G_CDS: 0.77 Total: -19.68 kcal Atomic # 8 Polarization: -11.35 SS G_CDS: -0.40 Total: -11.75 kcal Atomic # 14 Polarization: 18.55 SS G_CDS: -4.98 Total: 13.57 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -27.35 -7.37 -34.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259823495.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.772 kcal (2) G-P(sol) polarization free energy of solvation -27.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds