Wall clock time and date at job start Mon Mar 30 2020 05:52:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.46855 * 2 1 4 4 O 1.42898 * 109.47140 * 240.00436 * 2 1 3 5 5 C 1.50700 * 109.47130 * 120.00007 * 2 1 3 6 6 C 1.38236 * 120.00050 * 265.00079 * 5 2 1 7 7 C 1.38227 * 119.99946 * 179.97438 * 6 5 2 8 8 C 1.38236 * 120.00068 * 359.97438 * 7 6 5 9 9 C 1.50707 * 120.00156 * 179.97438 * 8 7 6 10 10 C 1.52998 * 109.47057 * 175.56150 * 9 8 7 11 11 C 1.53002 * 109.46967 * 295.56190 * 9 8 7 12 12 C 1.50703 * 109.46941 * 55.56012 * 9 8 7 13 13 H 1.07994 * 120.00006 * 0.11329 * 12 9 8 14 14 C 1.37876 * 119.99732 * 180.10882 * 12 9 8 15 15 N 1.31512 * 120.00111 * 0.02562 * 14 12 9 16 16 Si 1.86798 * 119.99852 * 180.02562 * 14 12 9 17 17 H 1.48503 * 109.47075 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.47061 * 120.00062 * 16 14 12 19 19 H 1.48503 * 109.47159 * 240.00135 * 16 14 12 20 20 C 1.38239 * 119.99982 * 0.07757 * 8 7 6 21 21 C 1.38232 * 119.99824 * 359.88394 * 20 8 7 22 22 H 1.09006 * 109.47364 * 299.99621 * 1 2 3 23 23 H 1.09001 * 109.47793 * 60.00133 * 1 2 3 24 24 H 1.09006 * 109.47301 * 180.02562 * 1 2 3 25 25 H 0.96708 * 113.99911 * 299.99526 * 4 2 1 26 26 H 1.08001 * 119.99988 * 359.97433 * 6 5 2 27 27 H 1.08001 * 120.00475 * 179.72706 * 7 6 5 28 28 H 1.08998 * 109.47001 * 60.00014 * 10 9 8 29 29 H 1.08997 * 109.46913 * 180.02562 * 10 9 8 30 30 H 1.08997 * 109.47217 * 300.00090 * 10 9 8 31 31 H 1.08997 * 109.46977 * 59.99704 * 11 9 8 32 32 H 1.08997 * 109.46985 * 179.97438 * 11 9 8 33 33 H 1.08998 * 109.47239 * 300.00077 * 11 9 8 34 34 H 0.97007 * 119.99816 * 180.02562 * 15 14 12 35 35 H 1.07999 * 119.99988 * 179.97438 * 20 8 7 36 36 H 1.07999 * 119.99663 * 180.11166 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6735 -1.1668 5 6 2.0323 -0.7104 1.2305 6 6 2.3610 0.0140 2.3610 7 6 2.8213 -0.6377 3.4898 8 6 2.9523 -2.0138 3.4883 9 6 3.4547 -2.7243 4.7188 10 6 3.4004 -4.2365 4.4924 11 6 4.8985 -2.3018 4.9979 12 6 2.5883 -2.3614 5.8973 13 1 1.7560 -1.6855 5.7677 14 6 2.8582 -2.8923 7.1407 15 7 3.8720 -3.7151 7.2985 16 14 1.7839 -2.4430 8.6013 17 1 0.7175 -1.5074 8.1622 18 1 1.1646 -3.6729 9.1572 19 1 2.6152 -1.7919 9.6455 20 6 2.6246 -2.7381 2.3574 21 6 2.1636 -2.0865 1.2288 22 1 -0.3634 0.5138 0.8900 23 1 -0.3635 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 1.7210 -1.5952 -1.2330 26 1 2.2583 1.0891 2.3623 27 1 3.0823 -0.0715 4.3716 28 1 4.0271 -4.4990 3.6400 29 1 3.7633 -4.7503 5.3825 30 1 2.3719 -4.5375 4.2935 31 1 4.9371 -1.2245 5.1591 32 1 5.2616 -2.8153 5.8881 33 1 5.5251 -2.5643 4.1455 34 1 4.0616 -4.0889 8.1733 35 1 2.7273 -3.8132 2.3561 36 1 1.9058 -2.6525 0.3459 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260346339.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:06 Heat of formation + Delta-G solvation = -57.739367 kcal Electronic energy + Delta-G solvation = -16564.980470 eV Core-core repulsion = 14012.730224 eV Total energy + Delta-G solvation = -2552.250246 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 234.136 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.71895 -38.52191 -36.56234 -33.63866 -32.02637 -31.72681 -29.28628 -27.69499 -27.20767 -24.74691 -23.24544 -22.21942 -20.57106 -18.45946 -17.98782 -16.96980 -16.54802 -16.01884 -15.57640 -15.06740 -14.97429 -14.72876 -14.17491 -14.04881 -13.63795 -13.46353 -13.15561 -13.04533 -12.82734 -12.72288 -12.47476 -12.35795 -12.14985 -12.01296 -11.74614 -11.43238 -11.29063 -10.86956 -10.76697 -10.37819 -9.65762 -9.17655 -8.00812 -6.16850 0.63835 0.66335 1.39398 1.43201 1.52544 2.44304 3.01765 3.22373 3.60119 3.80175 4.06226 4.21518 4.32783 4.37759 4.39284 4.74051 4.75426 4.81285 4.90447 4.95800 5.00448 5.08903 5.10627 5.24982 5.30965 5.35035 5.41270 5.59526 5.62261 5.74372 5.75531 5.89526 6.14414 6.27898 6.33300 6.47167 6.81235 6.88343 7.50293 8.97979 Molecular weight = 234.14amu Principal moments of inertia in cm(-1) A = 0.037390 B = 0.006519 C = 0.006057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.676578 B = 4294.350419 C = 4621.777176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.153 3.847 3 H 0.108 0.892 4 O -0.572 6.572 5 C -0.142 4.142 6 C -0.118 4.118 7 C -0.128 4.128 8 C -0.055 4.055 9 C 0.084 3.916 10 C -0.121 4.121 11 C -0.116 4.116 12 C -0.511 4.511 13 H 0.045 0.955 14 C 0.023 3.977 15 N -0.905 5.905 16 Si 0.945 3.055 17 H -0.274 1.274 18 H -0.282 1.282 19 H -0.281 1.281 20 C -0.144 4.144 21 C -0.114 4.114 22 H 0.066 0.934 23 H 0.077 0.923 24 H 0.061 0.939 25 H 0.386 0.614 26 H 0.137 0.863 27 H 0.107 0.893 28 H 0.030 0.970 29 H 0.059 0.941 30 H 0.026 0.974 31 H 0.024 0.976 32 H 0.063 0.937 33 H 0.020 0.980 34 H 0.259 0.741 35 H 0.123 0.877 36 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.815 4.767 -12.079 13.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.094 3.906 3 H 0.126 0.874 4 O -0.380 6.380 5 C -0.142 4.142 6 C -0.136 4.136 7 C -0.146 4.146 8 C -0.055 4.055 9 C 0.084 3.916 10 C -0.179 4.179 11 C -0.174 4.174 12 C -0.549 4.549 13 H 0.063 0.937 14 C -0.176 4.176 15 N -0.544 5.544 16 Si 0.772 3.228 17 H -0.198 1.198 18 H -0.208 1.208 19 H -0.207 1.207 20 C -0.162 4.162 21 C -0.132 4.132 22 H 0.085 0.915 23 H 0.095 0.905 24 H 0.080 0.920 25 H 0.236 0.764 26 H 0.155 0.845 27 H 0.125 0.875 28 H 0.049 0.951 29 H 0.078 0.922 30 H 0.045 0.955 31 H 0.043 0.957 32 H 0.082 0.918 33 H 0.039 0.961 34 H 0.069 0.931 35 H 0.141 0.859 36 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -4.462 5.238 -12.047 13.874 hybrid contribution -0.571 -0.538 1.551 1.738 sum -5.033 4.699 -10.496 12.553 Atomic orbital electron populations 1.22427 0.94384 1.03141 1.03142 1.20729 0.93662 0.95571 0.80595 0.87402 1.86555 1.77852 1.30277 1.43329 1.20648 1.02201 0.94460 0.96893 1.21115 0.99550 1.00277 0.92618 1.21055 1.00842 0.94537 0.98212 1.20513 0.95298 0.94237 0.95410 1.17268 0.92812 0.91885 0.89618 1.21729 0.98060 0.98418 0.99697 1.21657 0.97023 0.98697 1.00040 1.21324 1.13007 1.27228 0.93371 0.93715 1.25537 0.96299 0.95074 1.00718 1.69943 1.29073 1.31885 1.23498 0.85706 0.79149 0.77935 0.80034 1.19831 1.20804 1.20720 1.21323 1.01196 1.00382 0.93255 1.21021 0.99908 0.94103 0.98123 0.91520 0.90454 0.91993 0.76449 0.84541 0.87529 0.95146 0.92202 0.95524 0.95702 0.91822 0.96070 0.93125 0.85925 0.83997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.20 9.52 71.98 0.68 -2.51 16 2 C 0.15 3.41 3.83 29.85 0.11 3.52 16 3 H 0.11 2.26 8.05 -2.38 -0.02 2.24 16 4 O -0.57 -12.80 13.14 -148.98 -1.96 -14.76 16 5 C -0.14 -4.08 5.00 -19.87 -0.10 -4.18 16 6 C -0.12 -3.79 9.68 22.27 0.22 -3.57 16 7 C -0.13 -5.11 8.61 22.27 0.19 -4.92 16 8 C -0.05 -2.34 4.72 -19.86 -0.09 -2.44 16 9 C 0.08 4.12 0.58 -53.67 -0.03 4.09 16 10 C -0.12 -5.77 6.92 71.98 0.50 -5.27 16 11 C -0.12 -5.67 8.11 71.98 0.58 -5.08 16 12 C -0.51 -27.47 7.58 25.60 0.19 -27.28 16 13 H 0.04 2.45 7.47 -2.91 -0.02 2.43 16 14 C 0.02 1.21 5.15 84.65 0.44 1.65 16 15 N -0.90 -49.84 9.35 21.45 0.20 -49.63 16 16 Si 0.94 43.12 29.54 68.60 2.03 45.14 16 17 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 18 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 19 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 20 C -0.14 -5.35 8.99 22.27 0.20 -5.15 16 21 C -0.11 -3.41 9.33 22.27 0.21 -3.21 16 22 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 23 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 24 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 25 H 0.39 6.16 7.39 -74.05 -0.55 5.61 16 26 H 0.14 3.57 8.06 -2.91 -0.02 3.55 16 27 H 0.11 4.45 7.73 -2.91 -0.02 4.42 16 28 H 0.03 1.28 7.30 -2.39 -0.02 1.26 16 29 H 0.06 3.14 6.08 -2.39 -0.01 3.12 16 30 H 0.03 1.21 7.72 -2.39 -0.02 1.19 16 31 H 0.02 1.16 7.66 -2.39 -0.02 1.14 16 32 H 0.06 3.38 6.06 -2.39 -0.01 3.36 16 33 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.26 13.68 8.31 -92.70 -0.77 12.91 16 35 H 0.12 4.42 5.90 -2.91 -0.02 4.40 16 36 H 0.14 3.15 6.62 -2.91 -0.02 3.14 16 Total: -1.00 -59.83 288.28 3.89 -55.94 By element: Atomic # 1 Polarization: 17.13 SS G_CDS: 0.52 Total: 17.65 kcal Atomic # 6 Polarization: -57.44 SS G_CDS: 3.10 Total: -54.34 kcal Atomic # 7 Polarization: -49.84 SS G_CDS: 0.20 Total: -49.63 kcal Atomic # 8 Polarization: -12.80 SS G_CDS: -1.96 Total: -14.76 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.14 kcal Total: -59.83 3.89 -55.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260346339.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.799 kcal (2) G-P(sol) polarization free energy of solvation -59.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds