Wall clock time and date at job start Mon Mar 30 2020 05:25:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.52997 * 109.47127 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.47196 * 304.99671 * 4 3 2 6 6 O 1.42899 * 109.47457 * 64.99652 * 4 3 2 7 7 C 1.50701 * 109.47348 * 184.99767 * 4 3 2 8 8 C 1.38254 * 120.00047 * 264.99933 * 7 4 3 9 9 C 1.38208 * 119.99976 * 179.97438 * 8 7 4 10 10 C 1.38256 * 120.00127 * 359.97438 * 9 8 7 11 11 C 1.38209 * 120.00025 * 359.97438 * 10 9 8 12 12 C 1.38216 * 119.99922 * 84.72071 * 7 4 3 13 13 C 1.50705 * 120.00122 * 0.02562 * 12 7 4 14 14 C 1.50701 * 109.46850 * 84.99411 * 13 12 7 15 15 H 1.07991 * 120.00639 * 0.02562 * 14 13 12 16 16 C 1.37883 * 119.99555 * 180.02562 * 14 13 12 17 17 N 1.31507 * 120.00166 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 119.99801 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.46925 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.46825 * 119.99567 * 18 16 14 21 21 H 1.48491 * 109.46932 * 239.99846 * 18 16 14 22 22 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 24 24 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 25 25 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 26 26 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 27 27 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 28 28 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 29 29 H 0.96703 * 114.00039 * 59.99583 * 6 4 3 30 30 H 1.07994 * 119.99909 * 359.97438 * 8 7 4 31 31 H 1.07999 * 120.00052 * 179.97438 * 9 8 7 32 32 H 1.08001 * 120.00171 * 179.97438 * 10 9 8 33 33 H 1.08000 * 120.00145 * 179.97438 * 11 10 9 34 34 H 1.08990 * 109.47065 * 204.99586 * 13 12 7 35 35 H 1.09001 * 109.46702 * 324.99897 * 13 12 7 36 36 H 0.97008 * 120.00438 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9330 0.8533 0.8427 6 8 4.0469 0.8729 -1.2200 7 6 4.0723 2.8580 0.1244 8 6 4.4016 3.5763 -1.0100 9 6 4.8618 4.8746 -0.8965 10 6 4.9924 5.4551 0.3514 11 6 4.6621 4.7374 1.4855 12 6 4.1983 3.4400 1.3717 13 6 3.8339 2.6589 2.6080 14 6 5.0111 1.8223 3.0387 15 1 5.9311 1.8534 2.4741 16 6 4.9134 1.0172 4.1538 17 7 3.7932 0.9797 4.8417 18 14 6.3728 -0.0193 4.6882 19 1 7.5052 0.2012 3.7532 20 1 6.7808 0.3713 6.0616 21 1 5.9921 -1.4545 4.6741 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 0.5139 0.8900 25 1 1.8934 -0.5137 0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 1.6767 1.9564 -0.8900 28 1 1.6767 1.9563 0.8899 29 1 3.7619 1.3472 -2.0131 30 1 4.2993 3.1230 -1.9848 31 1 5.1195 5.4356 -1.7827 32 1 5.3524 6.4695 0.4402 33 1 4.7645 5.1908 2.4603 34 1 3.5665 3.3490 3.4080 35 1 2.9865 2.0089 2.3903 36 1 3.7245 0.4135 5.6264 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260370070.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:35 Heat of formation + Delta-G solvation = -57.502336 kcal Electronic energy + Delta-G solvation = -16631.590061 eV Core-core repulsion = 14079.350094 eV Total energy + Delta-G solvation = -2552.239968 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 234.136 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.33570 -36.73853 -33.93704 -33.42118 -31.46556 -30.58022 -27.92850 -26.96261 -23.79539 -23.15841 -21.13413 -20.60651 -20.00114 -16.77509 -16.28581 -15.69283 -15.23832 -14.71347 -14.42017 -14.16600 -13.55753 -13.20902 -13.01577 -12.59679 -12.46110 -11.86293 -11.62168 -11.47958 -11.40786 -11.23829 -10.96392 -10.87606 -10.66703 -10.46086 -10.28393 -10.13993 -9.62493 -9.48047 -9.31788 -8.44507 -8.17531 -7.76982 -6.07267 -4.10994 1.96612 2.09948 3.28748 3.36849 3.42771 4.33372 4.49185 4.91597 5.08726 5.26669 5.36424 5.41060 5.42968 5.51781 5.59891 5.75702 5.83746 5.96104 6.09130 6.15305 6.19422 6.26178 6.38442 6.45451 6.59727 6.66720 6.70162 6.83721 7.01789 7.13507 7.22948 7.47257 7.69570 7.78323 7.89013 8.06735 8.28395 8.94903 9.53435 11.02098 Molecular weight = 234.14amu Principal moments of inertia in cm(-1) A = 0.015623 B = 0.010410 C = 0.007406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.789454 B = 2689.155338 C = 3779.566339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.121 4.121 3 C -0.140 4.140 4 C 0.144 3.856 5 H 0.132 0.868 6 O -0.558 6.558 7 C -0.118 4.118 8 C -0.119 4.119 9 C -0.148 4.148 10 C -0.125 4.125 11 C -0.125 4.125 12 C -0.028 4.028 13 C 0.043 3.957 14 C -0.511 4.511 15 H 0.058 0.942 16 C 0.061 3.939 17 N -0.891 5.891 18 Si 0.892 3.108 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.283 1.283 22 H 0.049 0.951 23 H 0.047 0.953 24 H 0.054 0.946 25 H 0.067 0.933 26 H 0.062 0.938 27 H 0.055 0.945 28 H 0.077 0.923 29 H 0.360 0.640 30 H 0.110 0.890 31 H 0.109 0.891 32 H 0.110 0.890 33 H 0.117 0.883 34 H 0.027 0.973 35 H 0.035 0.965 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.358 3.166 -10.294 11.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.158 4.158 3 C -0.178 4.178 4 C 0.085 3.915 5 H 0.150 0.850 6 O -0.363 6.363 7 C -0.119 4.119 8 C -0.137 4.137 9 C -0.166 4.166 10 C -0.143 4.143 11 C -0.143 4.143 12 C -0.028 4.028 13 C 0.007 3.993 14 C -0.549 4.549 15 H 0.076 0.924 16 C -0.141 4.141 17 N -0.530 5.530 18 Si 0.719 3.281 19 H -0.196 1.196 20 H -0.210 1.210 21 H -0.209 1.209 22 H 0.069 0.931 23 H 0.066 0.934 24 H 0.073 0.927 25 H 0.086 0.914 26 H 0.081 0.919 27 H 0.074 0.926 28 H 0.096 0.904 29 H 0.207 0.793 30 H 0.128 0.872 31 H 0.128 0.872 32 H 0.128 0.872 33 H 0.136 0.864 34 H 0.046 0.954 35 H 0.053 0.947 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.169 2.654 -9.720 10.563 hybrid contribution 0.576 0.006 0.070 0.580 sum -2.593 2.660 -9.651 10.341 Atomic orbital electron populations 1.21770 0.96469 1.01090 1.01406 1.21461 0.95013 0.96762 1.02611 1.22244 0.95768 0.97352 1.02446 1.21053 0.92049 0.90850 0.87514 0.85036 1.86648 1.77301 1.56776 1.15593 1.20375 1.01530 0.96723 0.93249 1.20712 1.00911 0.94543 0.97491 1.20812 1.03247 0.95577 0.96973 1.21028 1.01034 0.99330 0.92943 1.21094 1.00366 0.94797 0.98071 1.20508 0.92956 0.93450 0.95880 1.18449 0.97474 0.94544 0.88876 1.21052 0.98492 1.24446 1.10930 0.92416 1.24983 0.95930 0.96853 0.96312 1.69958 1.25392 1.39488 1.18166 0.86527 0.82912 0.80129 0.78514 1.19599 1.20966 1.20864 0.93140 0.93352 0.92704 0.91385 0.91905 0.92625 0.90407 0.79320 0.87233 0.87246 0.87160 0.86446 0.95441 0.94673 0.92882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.91 37.16 0.37 -1.59 16 2 C -0.12 -1.85 5.83 -26.73 -0.16 -2.00 16 3 C -0.14 -2.29 4.65 -26.73 -0.12 -2.42 16 4 C 0.14 2.68 2.52 -27.88 -0.07 2.61 16 5 H 0.13 2.96 6.43 -51.93 -0.33 2.62 16 6 O -0.56 -9.50 12.53 -35.23 -0.44 -9.94 16 7 C -0.12 -2.29 5.07 -104.62 -0.53 -2.82 16 8 C -0.12 -1.98 9.30 -39.59 -0.37 -2.35 16 9 C -0.15 -2.35 10.05 -39.59 -0.40 -2.75 16 10 C -0.13 -2.10 10.05 -39.59 -0.40 -2.50 16 11 C -0.13 -2.45 9.68 -39.59 -0.38 -2.84 16 12 C -0.03 -0.60 5.07 -104.62 -0.53 -1.13 16 13 C 0.04 1.08 4.44 -29.03 -0.13 0.95 16 14 C -0.51 -14.01 8.30 -34.44 -0.29 -14.29 16 15 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 16 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 17 N -0.89 -25.65 13.29 55.43 0.74 -24.92 16 18 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 19 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 22 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 25 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 26 H 0.06 0.92 7.82 -51.93 -0.41 0.51 16 27 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.08 1.39 6.89 -51.93 -0.36 1.04 16 29 H 0.36 4.63 7.33 45.56 0.33 4.96 16 30 H 0.11 1.50 6.41 -52.49 -0.34 1.17 16 31 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 32 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 33 H 0.12 2.22 8.06 -52.49 -0.42 1.80 16 34 H 0.03 0.72 8.05 -51.93 -0.42 0.31 16 35 H 0.04 0.89 5.66 -51.93 -0.29 0.60 16 36 H 0.26 7.13 8.31 -40.82 -0.34 6.80 16 LS Contribution 296.50 15.07 4.47 4.47 Total: -1.00 -29.33 296.50 -8.09 -37.42 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -4.74 Total: 6.02 kcal Atomic # 6 Polarization: -26.44 SS G_CDS: -3.10 Total: -29.54 kcal Atomic # 7 Polarization: -25.65 SS G_CDS: 0.74 Total: -24.92 kcal Atomic # 8 Polarization: -9.50 SS G_CDS: -0.44 Total: -9.94 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -29.33 -8.09 -37.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260370070.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.078 kcal (2) G-P(sol) polarization free energy of solvation -29.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds