Wall clock time and date at job start Mon Mar 30 2020 05:25:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.52997 * 109.47127 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.47196 * 304.99671 * 4 3 2 6 6 O 1.42899 * 109.47457 * 64.99652 * 4 3 2 7 7 C 1.50701 * 109.47348 * 184.99767 * 4 3 2 8 8 C 1.38254 * 120.00047 * 264.99933 * 7 4 3 9 9 C 1.38208 * 119.99976 * 179.97438 * 8 7 4 10 10 C 1.38256 * 120.00127 * 359.97438 * 9 8 7 11 11 C 1.38209 * 120.00025 * 359.97438 * 10 9 8 12 12 C 1.38216 * 119.99922 * 84.72071 * 7 4 3 13 13 C 1.50705 * 120.00122 * 0.02562 * 12 7 4 14 14 C 1.50701 * 109.46850 * 84.99411 * 13 12 7 15 15 H 1.07991 * 120.00639 * 0.02562 * 14 13 12 16 16 C 1.37883 * 119.99555 * 180.02562 * 14 13 12 17 17 N 1.31507 * 120.00166 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 119.99801 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.46925 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.46825 * 119.99567 * 18 16 14 21 21 H 1.48491 * 109.46932 * 239.99846 * 18 16 14 22 22 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 24 24 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 25 25 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 26 26 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 27 27 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 28 28 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 29 29 H 0.96703 * 114.00039 * 59.99583 * 6 4 3 30 30 H 1.07994 * 119.99909 * 359.97438 * 8 7 4 31 31 H 1.07999 * 120.00052 * 179.97438 * 9 8 7 32 32 H 1.08001 * 120.00171 * 179.97438 * 10 9 8 33 33 H 1.08000 * 120.00145 * 179.97438 * 11 10 9 34 34 H 1.08990 * 109.47065 * 204.99586 * 13 12 7 35 35 H 1.09001 * 109.46702 * 324.99897 * 13 12 7 36 36 H 0.97008 * 120.00438 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9330 0.8533 0.8427 6 8 4.0469 0.8729 -1.2200 7 6 4.0723 2.8580 0.1244 8 6 4.4016 3.5763 -1.0100 9 6 4.8618 4.8746 -0.8965 10 6 4.9924 5.4551 0.3514 11 6 4.6621 4.7374 1.4855 12 6 4.1983 3.4400 1.3717 13 6 3.8339 2.6589 2.6080 14 6 5.0111 1.8223 3.0387 15 1 5.9311 1.8534 2.4741 16 6 4.9134 1.0172 4.1538 17 7 3.7932 0.9797 4.8417 18 14 6.3728 -0.0193 4.6882 19 1 7.5052 0.2012 3.7532 20 1 6.7808 0.3713 6.0616 21 1 5.9921 -1.4545 4.6741 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 0.5139 0.8900 25 1 1.8934 -0.5137 0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 1.6767 1.9564 -0.8900 28 1 1.6767 1.9563 0.8899 29 1 3.7619 1.3472 -2.0131 30 1 4.2993 3.1230 -1.9848 31 1 5.1195 5.4356 -1.7827 32 1 5.3524 6.4695 0.4402 33 1 4.7645 5.1908 2.4603 34 1 3.5665 3.3490 3.4080 35 1 2.9865 2.0089 2.3903 36 1 3.7245 0.4135 5.6264 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260370070.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:35 Heat of formation + Delta-G solvation = -74.850925 kcal Electronic energy + Delta-G solvation = -16632.342353 eV Core-core repulsion = 14079.350094 eV Total energy + Delta-G solvation = -2552.992259 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 234.136 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.77366 -38.11697 -35.60316 -34.98050 -33.19161 -32.00704 -29.36613 -28.66684 -25.43142 -24.77426 -22.51988 -22.00686 -21.47374 -18.55078 -18.05663 -17.13042 -16.76634 -16.36157 -15.87616 -15.59225 -14.92517 -14.60104 -14.49741 -14.19347 -14.06042 -13.40117 -13.34286 -13.01167 -12.79165 -12.70109 -12.63182 -12.43433 -12.26434 -12.04383 -11.68524 -11.59233 -11.45331 -11.28895 -10.79709 -10.58880 -9.58053 -9.29698 -8.21320 -6.32966 0.56698 0.66785 1.35201 1.36866 1.49409 2.37570 2.98826 3.09230 3.59405 3.72882 4.09029 4.10368 4.18728 4.26763 4.32176 4.40417 4.57039 4.69696 4.73452 4.80106 4.90012 5.01344 5.09068 5.14110 5.22424 5.26049 5.35607 5.37896 5.47226 5.50823 5.68103 5.69294 5.80439 6.08576 6.14017 6.30551 6.78446 6.90520 7.34768 8.87429 Molecular weight = 234.14amu Principal moments of inertia in cm(-1) A = 0.015623 B = 0.010410 C = 0.007406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.789454 B = 2689.155338 C = 3779.566339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.119 4.119 3 C -0.131 4.131 4 C 0.153 3.847 5 H 0.082 0.918 6 O -0.563 6.563 7 C -0.131 4.131 8 C -0.116 4.116 9 C -0.136 4.136 10 C -0.121 4.121 11 C -0.145 4.145 12 C -0.064 4.064 13 C 0.057 3.943 14 C -0.521 4.521 15 H 0.046 0.954 16 C 0.011 3.989 17 N -0.924 5.924 18 Si 0.955 3.045 19 H -0.269 1.269 20 H -0.275 1.275 21 H -0.276 1.276 22 H 0.062 0.938 23 H 0.069 0.931 24 H 0.043 0.957 25 H 0.035 0.965 26 H 0.074 0.926 27 H 0.085 0.915 28 H 0.052 0.948 29 H 0.382 0.618 30 H 0.147 0.853 31 H 0.153 0.847 32 H 0.144 0.856 33 H 0.109 0.891 34 H -0.004 1.004 35 H 0.018 0.982 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.747 3.891 -13.078 13.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.156 4.156 3 C -0.169 4.169 4 C 0.094 3.906 5 H 0.100 0.900 6 O -0.371 6.371 7 C -0.132 4.132 8 C -0.134 4.134 9 C -0.153 4.153 10 C -0.139 4.139 11 C -0.163 4.163 12 C -0.064 4.064 13 C 0.020 3.980 14 C -0.559 4.559 15 H 0.064 0.936 16 C -0.188 4.188 17 N -0.564 5.564 18 Si 0.780 3.220 19 H -0.194 1.194 20 H -0.200 1.200 21 H -0.201 1.201 22 H 0.081 0.919 23 H 0.088 0.912 24 H 0.062 0.938 25 H 0.054 0.946 26 H 0.093 0.907 27 H 0.103 0.897 28 H 0.070 0.930 29 H 0.232 0.768 30 H 0.165 0.835 31 H 0.171 0.829 32 H 0.162 0.838 33 H 0.127 0.873 34 H 0.015 0.985 35 H 0.036 0.964 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.561 3.390 -12.519 13.220 hybrid contribution 0.396 -0.160 0.842 0.944 sum -2.165 3.230 -11.677 12.308 Atomic orbital electron populations 1.21736 0.94463 1.02146 1.01924 1.21436 0.96774 0.95847 1.01585 1.22145 0.94202 0.98030 1.02506 1.20640 0.93212 0.89919 0.86869 0.90028 1.86602 1.77458 1.57142 1.15873 1.20483 1.02121 0.97134 0.93424 1.21130 0.99478 0.94893 0.97893 1.21347 1.00729 0.95245 0.98003 1.21382 0.99740 1.00520 0.92237 1.21178 1.01378 0.94503 0.99277 1.20274 0.96275 0.94527 0.95340 1.18135 0.96166 0.93709 0.90015 1.21266 0.98754 1.24934 1.10935 0.93601 1.25789 0.98573 0.98028 0.96404 1.70063 1.27215 1.40391 1.18685 0.85547 0.79602 0.78633 0.78253 1.19383 1.20029 1.20126 0.91868 0.91206 0.93772 0.94570 0.90716 0.89655 0.92976 0.76821 0.83537 0.82899 0.83838 0.87278 0.98532 0.96426 0.92623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.66 9.91 71.98 0.71 -2.94 16 2 C -0.12 -3.65 5.83 30.60 0.18 -3.47 16 3 C -0.13 -4.30 4.65 30.60 0.14 -4.16 16 4 C 0.15 5.77 2.52 29.85 0.08 5.85 16 5 H 0.08 3.93 6.43 -2.39 -0.02 3.91 16 6 O -0.56 -18.23 12.53 -148.98 -1.87 -20.10 16 7 C -0.13 -5.04 5.07 -19.87 -0.10 -5.14 16 8 C -0.12 -3.48 9.30 22.27 0.21 -3.28 16 9 C -0.14 -3.70 10.05 22.27 0.22 -3.47 16 10 C -0.12 -3.72 10.05 22.27 0.22 -3.49 16 11 C -0.15 -5.73 9.68 22.27 0.22 -5.52 16 12 C -0.06 -2.86 5.07 -19.86 -0.10 -2.96 16 13 C 0.06 3.03 4.44 29.10 0.13 3.15 16 14 C -0.52 -30.10 8.30 25.60 0.21 -29.89 16 15 H 0.05 2.69 7.74 -2.92 -0.02 2.67 16 16 C 0.01 0.62 5.46 84.66 0.46 1.08 16 17 N -0.92 -55.54 13.29 21.45 0.28 -55.26 16 18 Si 0.95 45.28 29.54 68.60 2.03 47.30 16 19 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 20 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 21 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 22 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 23 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 24 H 0.04 1.19 8.14 -2.38 -0.02 1.17 16 25 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.07 2.10 7.82 -2.39 -0.02 2.08 16 27 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 28 H 0.05 1.97 6.89 -2.39 -0.02 1.95 16 29 H 0.38 8.44 7.33 -74.06 -0.54 7.90 16 30 H 0.15 3.24 6.41 -2.91 -0.02 3.22 16 31 H 0.15 2.92 8.06 -2.91 -0.02 2.90 16 32 H 0.14 3.41 8.06 -2.91 -0.02 3.39 16 33 H 0.11 4.31 8.06 -2.91 -0.02 4.29 16 34 H 0.00 -0.21 8.05 -2.39 -0.02 -0.23 16 35 H 0.02 0.98 5.66 -2.39 -0.01 0.96 16 36 H 0.26 14.95 8.31 -92.70 -0.77 14.18 16 Total: -1.00 -66.80 296.50 3.54 -63.26 By element: Atomic # 1 Polarization: 18.52 SS G_CDS: 0.52 Total: 19.03 kcal Atomic # 6 Polarization: -56.82 SS G_CDS: 2.58 Total: -54.24 kcal Atomic # 7 Polarization: -55.54 SS G_CDS: 0.28 Total: -55.26 kcal Atomic # 8 Polarization: -18.23 SS G_CDS: -1.87 Total: -20.10 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.30 kcal Total: -66.80 3.54 -63.26 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260370070.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.593 kcal (2) G-P(sol) polarization free energy of solvation -66.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds