Wall clock time and date at job start Mon Mar 30 2020 06:29:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.37913 * 119.57501 * 2 1 4 4 C 1.39454 * 119.06521 * 180.22966 * 3 2 1 5 5 N 1.39169 * 120.86958 * 179.75248 * 4 3 2 6 6 C 1.46906 * 110.99877 * 295.76791 * 5 4 3 7 7 C 1.46897 * 111.00051 * 59.71888 * 5 4 3 8 8 C 1.53001 * 109.47528 * 170.00435 * 7 5 4 9 9 C 1.50700 * 109.47364 * 180.02562 * 8 7 5 10 10 H 1.07997 * 119.99886 * 359.97438 * 9 8 7 11 11 C 1.37872 * 119.99792 * 180.02562 * 9 8 7 12 12 N 1.31519 * 120.00033 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 120.00076 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.46899 * 359.97438 * 13 11 9 15 15 H 1.48496 * 109.47444 * 119.99510 * 13 11 9 16 16 H 1.48503 * 109.47300 * 239.99948 * 13 11 9 17 17 C 1.39493 * 118.26846 * 359.47802 * 4 3 2 18 18 C 1.50699 * 120.46985 * 180.25095 * 17 4 3 19 19 C 1.37876 * 119.07068 * 0.27602 * 17 4 3 20 20 N 1.31975 * 119.58011 * 179.69773 * 2 1 3 21 21 H 1.08998 * 109.47238 * 270.30004 * 1 2 3 22 22 H 1.08997 * 109.47386 * 30.30318 * 1 2 3 23 23 H 1.09004 * 109.46958 * 150.30150 * 1 2 3 24 24 H 1.08003 * 120.46895 * 359.97438 * 3 2 1 25 25 H 1.08992 * 109.47459 * 183.94976 * 6 5 4 26 26 H 1.09004 * 109.47040 * 303.95126 * 6 5 4 27 27 H 1.09000 * 109.47033 * 63.95079 * 6 5 4 28 28 H 1.09009 * 109.47296 * 290.00232 * 7 5 4 29 29 H 1.09002 * 109.47055 * 49.99931 * 7 5 4 30 30 H 1.09001 * 109.46792 * 299.99900 * 8 7 5 31 31 H 1.09001 * 109.46841 * 59.99659 * 8 7 5 32 32 H 0.97005 * 119.99773 * 180.02562 * 12 11 9 33 33 H 1.09001 * 109.46983 * 89.99881 * 18 17 4 34 34 H 1.08999 * 109.47410 * 210.00334 * 18 17 4 35 35 H 1.09001 * 109.47281 * 330.00298 * 18 17 4 36 36 H 1.07996 * 119.58446 * 179.97438 * 19 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1877 1.1994 0.0000 4 6 3.5822 1.1870 -0.0049 5 7 4.3069 2.3752 -0.0102 6 6 4.0676 3.1322 -1.2463 7 6 3.9948 3.1875 1.1733 8 6 4.9796 4.3548 1.2649 9 6 4.6598 5.1877 2.4794 10 1 3.8362 4.9123 3.1214 11 6 5.4180 6.3019 2.7702 12 7 6.4206 6.6376 1.9881 13 14 5.0221 7.3340 4.2760 14 1 3.8564 6.7480 4.9853 15 1 6.1961 7.3542 5.1850 16 1 4.6985 8.7207 3.8546 17 6 4.2319 -0.0473 0.0016 18 6 5.7372 -0.1186 0.0024 19 6 3.4776 -1.2014 0.0067 20 7 2.1585 -1.1477 0.0061 21 1 -0.3633 0.0054 1.0276 22 1 -0.3634 0.8872 -0.5185 23 1 -0.3633 -0.8927 -0.5092 24 1 1.6485 2.1352 -0.0004 25 1 4.6986 4.0208 -1.2560 26 1 4.3066 2.5074 -2.1070 27 1 3.0201 3.4298 -1.2930 28 1 2.9791 3.5747 1.0907 29 1 4.0771 2.5714 2.0687 30 1 5.9952 3.9676 1.3475 31 1 4.8972 4.9707 0.3694 32 1 6.9543 7.4213 2.1929 33 1 6.0998 -0.1305 1.0303 34 1 6.0583 -1.0273 -0.5067 35 1 6.1424 0.7506 -0.5157 36 1 3.9720 -2.1615 0.0113 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260372475.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:28 Heat of formation + Delta-G solvation = 7.925024 kcal Electronic energy + Delta-G solvation = -16245.009166 eV Core-core repulsion = 13727.899093 eV Total energy + Delta-G solvation = -2517.110073 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 234.143 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.62453 -38.67598 -35.38963 -34.69166 -32.75000 -31.30537 -30.04059 -27.67777 -26.38324 -26.21400 -23.90119 -22.18106 -21.34402 -18.71550 -17.84758 -17.40221 -16.53823 -16.23006 -16.10547 -15.45689 -15.29647 -15.01277 -14.22818 -14.06715 -14.05412 -13.90716 -13.30782 -13.29425 -13.00860 -12.92461 -12.89670 -12.72800 -12.55636 -12.43070 -11.93096 -11.54435 -11.33279 -10.58053 -10.48922 -10.37413 -9.64426 -9.49064 -8.22153 -6.33325 0.15120 0.18023 1.39470 1.40126 1.52924 2.38263 2.73590 2.83489 3.11798 3.41709 3.81564 3.94704 4.08589 4.14599 4.30190 4.41916 4.49411 4.54599 4.59615 4.69835 4.76756 4.84764 4.88795 4.89718 4.97824 5.00068 5.15052 5.32359 5.41491 5.48055 5.55177 5.69300 5.77147 5.93490 6.23341 6.36994 6.82660 7.01489 7.35930 8.89996 Molecular weight = 234.14amu Principal moments of inertia in cm(-1) A = 0.031893 B = 0.005658 C = 0.005264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.718955 B = 4947.814479 C = 5317.724505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.117 3.883 3 C -0.209 4.209 4 C 0.126 3.874 5 N -0.514 5.514 6 C 0.035 3.965 7 C 0.089 3.911 8 C 0.039 3.961 9 C -0.545 4.545 10 H 0.057 0.943 11 C 0.006 3.994 12 N -0.929 5.929 13 Si 0.964 3.036 14 H -0.264 1.264 15 H -0.278 1.278 16 H -0.276 1.276 17 C -0.133 4.133 18 C -0.095 4.095 19 C 0.104 3.896 20 N -0.506 5.506 21 H 0.084 0.916 22 H 0.085 0.915 23 H 0.082 0.918 24 H 0.131 0.869 25 H 0.067 0.933 26 H 0.079 0.921 27 H 0.034 0.966 28 H 0.029 0.971 29 H 0.053 0.947 30 H -0.004 1.004 31 H 0.002 0.998 32 H 0.264 0.736 33 H 0.066 0.934 34 H 0.090 0.910 35 H 0.062 0.938 36 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.737 -13.108 -5.426 16.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.020 4.020 3 C -0.231 4.231 4 C 0.024 3.976 5 N -0.235 5.235 6 C -0.111 4.111 7 C -0.036 4.036 8 C 0.001 3.999 9 C -0.584 4.584 10 H 0.075 0.925 11 C -0.193 4.193 12 N -0.569 5.569 13 Si 0.789 3.211 14 H -0.188 1.188 15 H -0.203 1.203 16 H -0.202 1.202 17 C -0.136 4.136 18 C -0.153 4.153 19 C -0.053 4.053 20 N -0.216 5.216 21 H 0.102 0.898 22 H 0.104 0.896 23 H 0.101 0.899 24 H 0.149 0.851 25 H 0.085 0.915 26 H 0.097 0.903 27 H 0.052 0.948 28 H 0.047 0.953 29 H 0.072 0.928 30 H 0.014 0.986 31 H 0.021 0.979 32 H 0.073 0.927 33 H 0.085 0.915 34 H 0.108 0.892 35 H 0.081 0.919 36 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -7.588 -13.849 -5.436 16.701 hybrid contribution -0.128 1.969 0.685 2.089 sum -7.717 -11.880 -4.751 14.942 Atomic orbital electron populations 1.20751 0.86867 1.04191 1.03761 1.21533 0.98339 0.87559 0.94594 1.22626 0.95222 1.00207 1.05005 1.19375 0.90558 0.92034 0.95659 1.59530 1.55818 1.04185 1.03959 1.22391 0.99930 0.98320 0.90493 1.22019 0.97465 0.93981 0.90182 1.18911 0.93789 0.91587 0.95607 1.21589 1.15228 1.10740 1.10803 0.92457 1.25894 0.94685 0.98790 0.99895 1.70102 1.19980 1.27110 1.39682 0.85416 0.78406 0.78353 0.78969 1.18794 1.20326 1.20202 1.21140 0.99070 0.92117 1.01293 1.20547 0.88811 1.03335 1.02568 1.23004 0.88821 0.98574 0.94871 1.67595 1.10559 1.29407 1.14027 0.89754 0.89605 0.89867 0.85086 0.91456 0.90273 0.94792 0.95273 0.92839 0.98592 0.97927 0.92669 0.91512 0.89151 0.91866 0.79729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.92 10.17 71.24 0.72 -1.19 16 2 C 0.12 3.16 6.78 42.46 0.29 3.45 16 3 C -0.21 -6.22 8.44 22.49 0.19 -6.03 16 4 C 0.13 4.10 4.65 38.57 0.18 4.28 16 5 N -0.51 -18.85 3.82 -719.44 -2.75 -21.59 16 6 C 0.04 1.16 9.06 127.69 1.16 2.32 16 7 C 0.09 3.83 4.49 86.30 0.39 4.22 16 8 C 0.04 2.03 4.90 29.85 0.15 2.18 16 9 C -0.55 -30.94 9.11 25.60 0.23 -30.70 16 10 H 0.06 3.14 7.74 -2.91 -0.02 3.12 16 11 C 0.01 0.33 5.46 84.65 0.46 0.79 16 12 N -0.93 -55.99 13.29 21.45 0.28 -55.70 16 13 Si 0.96 43.96 29.54 68.60 2.03 45.99 16 14 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 15 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 16 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 17 C -0.13 -3.80 5.91 -19.65 -0.12 -3.92 16 18 C -0.10 -2.39 9.82 71.24 0.70 -1.69 16 19 C 0.10 2.65 10.85 84.58 0.92 3.57 16 20 N -0.51 -14.09 10.27 -184.19 -1.89 -15.99 16 21 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 22 H 0.09 1.41 8.08 -2.39 -0.02 1.39 16 23 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 24 H 0.13 3.77 7.33 -2.91 -0.02 3.74 16 25 H 0.07 2.48 6.47 -2.39 -0.02 2.46 16 26 H 0.08 2.27 8.12 -2.38 -0.02 2.25 16 27 H 0.03 1.05 7.57 -2.39 -0.02 1.03 16 28 H 0.03 1.22 7.54 -2.38 -0.02 1.20 16 29 H 0.05 2.35 8.06 -2.39 -0.02 2.33 16 30 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 31 H 0.00 0.14 6.55 -2.39 -0.02 0.12 16 32 H 0.26 14.91 8.31 -92.70 -0.77 14.14 16 33 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.09 1.65 8.09 -2.39 -0.02 1.63 16 35 H 0.06 1.82 7.55 -2.39 -0.02 1.80 16 36 H 0.19 3.35 8.06 -2.91 -0.02 3.33 16 Total: -1.00 -65.09 299.91 3.98 -61.11 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: 1.04 Total: 8.93 kcal Atomic # 6 Polarization: -28.01 SS G_CDS: 5.27 Total: -22.74 kcal Atomic # 7 Polarization: -88.93 SS G_CDS: -4.35 Total: -93.29 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -65.09 3.98 -61.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260372475.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.033 kcal (2) G-P(sol) polarization free energy of solvation -65.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds